Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0641 and Psest_0642 are separated by 109 nucleotides Psest_0642 and Psest_0643 overlap by 4 nucleotides Psest_0643 and Psest_0644 are separated by 138 nucleotides
Psest_0641: Psest_0641 - 1-deoxy-D-xylulose-5-phosphate synthase, at 695,426 to 697,324
_0641
Psest_0642: Psest_0642 - Geranylgeranyl pyrophosphate synthase, at 697,434 to 698,324
_0642
Psest_0643: Psest_0643 - exodeoxyribonuclease VII, small subunit, at 698,321 to 698,563
_0643
Psest_0644: Psest_0644 - siderophore ferric iron reductase, AHA_1954 family, at 698,702 to 699,463
_0644
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1
2 at 698.607 kb on + strand at 698.608 kb on - strand at 698.655 kb on + strand at 698.656 kb on - strand at 698.656 kb on - strand at 698.668 kb on - strand at 698.668 kb on - strand at 699.200 kb on + strand, within Psest_0644 at 699.200 kb on + strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.264 kb on + strand, within Psest_0644 at 699.264 kb on + strand, within Psest_0644
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 698,607 + +1.0 698,608 - -1.5 698,655 + +2.0 698,656 - +0.2 698,656 - +0.2 698,668 - +0.4 698,668 - +1.0 699,200 + Psest_0644 0.65 -1.7 699,200 + Psest_0644 0.65 +2.0 699,220 - Psest_0644 0.68 -0.4 699,220 - Psest_0644 0.68 -0.0 699,220 - Psest_0644 0.68 +1.6 699,220 - Psest_0644 0.68 -0.4 699,264 + Psest_0644 0.74 -1.2 699,264 + Psest_0644 0.74 -0.4
Or see this region's nucleotide sequence