Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0619

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0618 and Psest_0619 are separated by 476 nucleotidesPsest_0619 and Psest_0620 are separated by 214 nucleotidesPsest_0620 and Psest_0621 are separated by 4 nucleotides Psest_0618: Psest_0618 - hypothetical protein, at 670,581 to 670,811 _0618 Psest_0619: Psest_0619 - cation diffusion facilitator family transporter, at 671,288 to 672,208 _0619 Psest_0620: Psest_0620 - Putative protein-S-isoprenylcysteine methyltransferase, at 672,423 to 672,884 _0620 Psest_0621: Psest_0621 - Protein-disulfide isomerase, at 672,889 to 673,569 _0621 Position (kb) 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 670.390 kb on + strandat 670.421 kb on + strandat 670.421 kb on + strandat 670.435 kb on + strandat 670.436 kb on - strandat 670.436 kb on - strandat 670.437 kb on + strandat 670.437 kb on + strandat 670.437 kb on + strandat 670.794 kb on - strandat 670.811 kb on + strandat 670.937 kb on + strandat 671.080 kb on - strandat 671.226 kb on - strandat 671.308 kb on + strandat 671.419 kb on - strand, within Psest_0619at 671.431 kb on - strand, within Psest_0619at 671.435 kb on - strand, within Psest_0619at 671.435 kb on - strand, within Psest_0619at 671.480 kb on - strand, within Psest_0619at 671.585 kb on + strand, within Psest_0619at 671.594 kb on + strand, within Psest_0619at 671.594 kb on + strand, within Psest_0619at 671.602 kb on + strand, within Psest_0619at 671.604 kb on + strand, within Psest_0619at 671.604 kb on + strand, within Psest_0619at 671.604 kb on + strand, within Psest_0619at 671.604 kb on + strand, within Psest_0619at 671.677 kb on - strand, within Psest_0619at 671.677 kb on - strand, within Psest_0619at 671.677 kb on - strand, within Psest_0619at 671.714 kb on - strand, within Psest_0619at 671.720 kb on - strand, within Psest_0619at 671.728 kb on + strand, within Psest_0619at 671.728 kb on + strand, within Psest_0619at 671.786 kb on - strand, within Psest_0619at 671.831 kb on - strand, within Psest_0619at 671.831 kb on - strand, within Psest_0619at 671.886 kb on + strand, within Psest_0619at 671.945 kb on - strand, within Psest_0619at 671.947 kb on - strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.994 kb on + strand, within Psest_0619at 671.995 kb on - strand, within Psest_0619at 671.995 kb on - strand, within Psest_0619at 671.995 kb on - strand, within Psest_0619at 672.094 kb on - strand, within Psest_0619at 672.094 kb on - strand, within Psest_0619at 672.103 kb on - strand, within Psest_0619at 672.150 kb on + strandat 672.151 kb on - strandat 672.206 kb on + strandat 672.206 kb on + strandat 672.206 kb on + strandat 672.206 kb on + strandat 672.206 kb on + strandat 672.206 kb on + strandat 672.206 kb on + strandat 672.207 kb on - strandat 672.207 kb on - strandat 672.207 kb on - strandat 672.207 kb on - strandat 672.207 kb on - strandat 672.236 kb on - strandat 672.236 kb on - strandat 672.243 kb on + strandat 672.243 kb on + strandat 672.243 kb on + strandat 672.243 kb on + strandat 672.243 kb on + strandat 672.244 kb on - strandat 672.244 kb on - strandat 672.355 kb on + strandat 672.356 kb on - strandat 672.356 kb on - strandat 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.523 kb on + strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.524 kb on - strand, within Psest_0620at 672.540 kb on + strand, within Psest_0620at 672.541 kb on - strand, within Psest_0620at 672.541 kb on - strand, within Psest_0620at 672.541 kb on - strand, within Psest_0620at 672.606 kb on + strand, within Psest_0620at 672.606 kb on + strand, within Psest_0620at 672.606 kb on + strand, within Psest_0620at 672.607 kb on - strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.634 kb on + strand, within Psest_0620at 672.634 kb on + strand, within Psest_0620at 672.634 kb on + strand, within Psest_0620at 672.635 kb on - strand, within Psest_0620at 672.635 kb on - strand, within Psest_0620at 672.651 kb on + strand, within Psest_0620at 672.652 kb on - strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.690 kb on - strand, within Psest_0620at 672.690 kb on - strand, within Psest_0620at 672.692 kb on + strand, within Psest_0620at 672.693 kb on - strand, within Psest_0620at 672.693 kb on - strand, within Psest_0620at 672.750 kb on + strand, within Psest_0620at 672.750 kb on + strand, within Psest_0620at 672.884 kb on + strandat 672.885 kb on - strandat 672.885 kb on - strandat 672.885 kb on - strandat 672.885 kb on - strandat 673.009 kb on - strand, within Psest_0621at 673.009 kb on - strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.054 kb on - strand, within Psest_0621at 673.054 kb on - strand, within Psest_0621at 673.121 kb on - strand, within Psest_0621

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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670,390 + +0.1
670,421 + -1.2
670,421 + -0.6
670,435 + -1.6
670,436 - -0.0
670,436 - -0.6
670,437 + +0.4
670,437 + +0.5
670,437 + -2.4
670,794 - +0.5
670,811 + +0.3
670,937 + +0.3
671,080 - -1.8
671,226 - -0.9
671,308 + -2.8
671,419 - Psest_0619 0.14 -0.6
671,431 - Psest_0619 0.16 -1.8
671,435 - Psest_0619 0.16 +0.1
671,435 - Psest_0619 0.16 -1.2
671,480 - Psest_0619 0.21 -2.2
671,585 + Psest_0619 0.32 -1.4
671,594 + Psest_0619 0.33 -1.8
671,594 + Psest_0619 0.33 -0.0
671,602 + Psest_0619 0.34 +0.0
671,604 + Psest_0619 0.34 -1.9
671,604 + Psest_0619 0.34 -1.4
671,604 + Psest_0619 0.34 -1.1
671,604 + Psest_0619 0.34 -2.2
671,677 - Psest_0619 0.42 -0.1
671,677 - Psest_0619 0.42 -0.2
671,677 - Psest_0619 0.42 -1.7
671,714 - Psest_0619 0.46 -1.1
671,720 - Psest_0619 0.47 -0.0
671,728 + Psest_0619 0.48 -1.4
671,728 + Psest_0619 0.48 +0.3
671,786 - Psest_0619 0.54 -0.9
671,831 - Psest_0619 0.59 -1.6
671,831 - Psest_0619 0.59 -1.0
671,886 + Psest_0619 0.65 -0.8
671,945 - Psest_0619 0.71 -1.4
671,947 - Psest_0619 0.72 -2.4
671,994 + Psest_0619 0.77 -1.1
671,994 + Psest_0619 0.77 -0.0
671,994 + Psest_0619 0.77 -3.5
671,994 + Psest_0619 0.77 +2.0
671,994 + Psest_0619 0.77 +1.0
671,994 + Psest_0619 0.77 -0.8
671,994 + Psest_0619 0.77 +0.0
671,994 + Psest_0619 0.77 -3.2
671,995 - Psest_0619 0.77 +0.5
671,995 - Psest_0619 0.77 -0.4
671,995 - Psest_0619 0.77 -2.4
672,094 - Psest_0619 0.88 +0.5
672,094 - Psest_0619 0.88 -3.6
672,103 - Psest_0619 0.88 -1.5
672,150 + -0.5
672,151 - -2.1
672,206 + -1.0
672,206 + -1.6
672,206 + +0.1
672,206 + -1.8
672,206 + +0.0
672,206 + -0.1
672,206 + -0.1
672,207 - -1.4
672,207 - -0.4
672,207 - -1.2
672,207 - -1.1
672,207 - -1.4
672,236 - -1.6
672,236 - -1.5
672,243 + +0.5
672,243 + -0.4
672,243 + +1.4
672,243 + -0.3
672,243 + +1.8
672,244 - -0.4
672,244 - -0.7
672,355 + +1.3
672,356 - -0.8
672,356 - -0.4
672,523 + Psest_0620 0.22 -1.6
672,523 + Psest_0620 0.22 -0.7
672,523 + Psest_0620 0.22 -0.4
672,523 + Psest_0620 0.22 +0.1
672,523 + Psest_0620 0.22 +0.2
672,523 + Psest_0620 0.22 +0.2
672,523 + Psest_0620 0.22 +0.3
672,523 + Psest_0620 0.22 -1.0
672,523 + Psest_0620 0.22 -0.4
672,523 + Psest_0620 0.22 -0.6
672,523 + Psest_0620 0.22 +0.4
672,523 + Psest_0620 0.22 -3.4
672,523 + Psest_0620 0.22 -2.4
672,524 - Psest_0620 0.22 -1.2
672,524 - Psest_0620 0.22 +0.5
672,524 - Psest_0620 0.22 -0.5
672,524 - Psest_0620 0.22 -0.1
672,524 - Psest_0620 0.22 -0.1
672,524 - Psest_0620 0.22 -1.2
672,524 - Psest_0620 0.22 -2.8
672,524 - Psest_0620 0.22 -0.2
672,540 + Psest_0620 0.25 -1.2
672,541 - Psest_0620 0.26 +0.0
672,541 - Psest_0620 0.26 +0.0
672,541 - Psest_0620 0.26 -2.2
672,606 + Psest_0620 0.40 -1.5
672,606 + Psest_0620 0.40 -1.1
672,606 + Psest_0620 0.40 -0.0
672,607 - Psest_0620 0.40 +2.0
672,610 + Psest_0620 0.40 -0.4
672,610 + Psest_0620 0.40 -2.6
672,610 + Psest_0620 0.40 -0.4
672,610 + Psest_0620 0.40 -1.7
672,610 + Psest_0620 0.40 -0.4
672,610 + Psest_0620 0.40 +1.0
672,610 + Psest_0620 0.40 -1.7
672,611 - Psest_0620 0.41 +0.2
672,611 - Psest_0620 0.41 -1.0
672,611 - Psest_0620 0.41 +0.6
672,611 - Psest_0620 0.41 +1.0
672,611 - Psest_0620 0.41 -0.2
672,611 - Psest_0620 0.41 -0.1
672,611 - Psest_0620 0.41 -0.7
672,611 - Psest_0620 0.41 +0.8
672,611 - Psest_0620 0.41 +0.4
672,611 - Psest_0620 0.41 -0.5
672,611 - Psest_0620 0.41 -1.1
672,611 - Psest_0620 0.41 +0.3
672,611 - Psest_0620 0.41 +1.2
672,611 - Psest_0620 0.41 -0.0
672,611 - Psest_0620 0.41 -0.1
672,611 - Psest_0620 0.41 +2.0
672,611 - Psest_0620 0.41 +1.6
672,611 - Psest_0620 0.41 +0.3
672,611 - Psest_0620 0.41 +1.0
672,611 - Psest_0620 0.41 -0.6
672,611 - Psest_0620 0.41 +1.0
672,611 - Psest_0620 0.41 +1.0
672,611 - Psest_0620 0.41 +1.2
672,634 + Psest_0620 0.46 -2.0
672,634 + Psest_0620 0.46 -1.7
672,634 + Psest_0620 0.46 -1.5
672,635 - Psest_0620 0.46 -1.0
672,635 - Psest_0620 0.46 +0.5
672,651 + Psest_0620 0.49 -2.7
672,652 - Psest_0620 0.50 -0.1
672,689 + Psest_0620 0.58 -1.4
672,689 + Psest_0620 0.58 -1.4
672,689 + Psest_0620 0.58 -1.3
672,689 + Psest_0620 0.58 -0.2
672,689 + Psest_0620 0.58 -0.2
672,690 - Psest_0620 0.58 +1.0
672,690 - Psest_0620 0.58 +1.0
672,692 + Psest_0620 0.58 -0.0
672,693 - Psest_0620 0.58 +1.2
672,693 - Psest_0620 0.58 +1.4
672,750 + Psest_0620 0.71 -0.2
672,750 + Psest_0620 0.71 -0.6
672,884 + +0.6
672,885 - -0.1
672,885 - -0.6
672,885 - -2.3
672,885 - -1.1
673,009 - Psest_0621 0.18 -1.7
673,009 - Psest_0621 0.18 +1.0
673,053 + Psest_0621 0.24 -0.2
673,053 + Psest_0621 0.24 +0.3
673,053 + Psest_0621 0.24 -2.2
673,053 + Psest_0621 0.24 -0.5
673,053 + Psest_0621 0.24 -1.6
673,053 + Psest_0621 0.24 +0.2
673,054 - Psest_0621 0.24 -0.5
673,054 - Psest_0621 0.24 -1.0
673,121 - Psest_0621 0.34 +0.5

Or see this region's nucleotide sequence