Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4122 and Psest_4123 overlap by 19 nucleotides Psest_4123 and Psest_4124 are separated by 248 nucleotides Psest_4124 and Psest_4125 are separated by 78 nucleotides
Psest_4122: Psest_4122 - hypothetical protein, at 4,301,420 to 4,302,700
_4122
Psest_4123: Psest_4123 - Site-specific recombinase XerD, at 4,302,682 to 4,303,740
_4123
Psest_4124: Psest_4124 - hypothetical protein, at 4,303,989 to 4,304,306
_4124
Psest_4125: Psest_4125 - Glycine cleavage system H protein (lipoate-binding), at 4,304,385 to 4,304,849
_4125
Position (kb) 4302
4303
4304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4301.688 kb on - strand, within Psest_4122 at 4301.688 kb on - strand, within Psest_4122 at 4301.688 kb on - strand, within Psest_4122 at 4301.688 kb on - strand, within Psest_4122 at 4301.837 kb on + strand, within Psest_4122 at 4301.838 kb on - strand, within Psest_4122 at 4301.838 kb on - strand, within Psest_4122 at 4301.838 kb on - strand, within Psest_4122 at 4301.841 kb on - strand, within Psest_4122 at 4301.873 kb on - strand, within Psest_4122 at 4301.972 kb on - strand, within Psest_4122 at 4301.972 kb on - strand, within Psest_4122 at 4302.017 kb on + strand, within Psest_4122 at 4302.074 kb on + strand, within Psest_4122 at 4302.074 kb on + strand, within Psest_4122 at 4302.074 kb on + strand, within Psest_4122 at 4302.074 kb on + strand, within Psest_4122 at 4302.074 kb on + strand, within Psest_4122 at 4302.075 kb on - strand, within Psest_4122 at 4302.075 kb on - strand, within Psest_4122 at 4302.075 kb on - strand, within Psest_4122 at 4302.116 kb on + strand, within Psest_4122 at 4302.116 kb on + strand, within Psest_4122 at 4302.173 kb on + strand, within Psest_4122 at 4302.173 kb on + strand, within Psest_4122 at 4302.173 kb on + strand, within Psest_4122 at 4302.173 kb on + strand, within Psest_4122 at 4302.173 kb on + strand, within Psest_4122 at 4302.173 kb on + strand, within Psest_4122 at 4302.174 kb on - strand, within Psest_4122 at 4302.174 kb on - strand, within Psest_4122 at 4302.174 kb on - strand, within Psest_4122 at 4302.174 kb on - strand, within Psest_4122 at 4302.174 kb on - strand, within Psest_4122 at 4302.174 kb on - strand, within Psest_4122 at 4302.371 kb on + strand, within Psest_4122 at 4302.371 kb on + strand, within Psest_4122 at 4302.371 kb on + strand, within Psest_4122 at 4302.371 kb on + strand, within Psest_4122 at 4302.372 kb on - strand, within Psest_4122 at 4302.449 kb on + strand, within Psest_4122 at 4302.449 kb on + strand, within Psest_4122 at 4302.450 kb on - strand, within Psest_4122 at 4302.450 kb on - strand, within Psest_4122 at 4302.458 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.461 kb on + strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.462 kb on - strand, within Psest_4122 at 4302.641 kb on + strand at 4302.642 kb on - strand at 4302.642 kb on - strand at 4302.642 kb on - strand at 4302.642 kb on - strand at 4302.642 kb on - strand at 4302.707 kb on + strand at 4302.932 kb on - strand, within Psest_4123 at 4302.992 kb on + strand, within Psest_4123 at 4303.021 kb on + strand, within Psest_4123 at 4303.081 kb on + strand, within Psest_4123 at 4303.081 kb on + strand, within Psest_4123 at 4303.082 kb on - strand, within Psest_4123 at 4303.082 kb on - strand, within Psest_4123 at 4303.107 kb on - strand, within Psest_4123 at 4303.223 kb on + strand, within Psest_4123 at 4303.224 kb on - strand, within Psest_4123 at 4303.224 kb on - strand, within Psest_4123 at 4303.397 kb on + strand, within Psest_4123 at 4303.398 kb on - strand, within Psest_4123 at 4303.527 kb on + strand, within Psest_4123 at 4303.527 kb on + strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.563 kb on + strand, within Psest_4123 at 4303.883 kb on + strand at 4303.976 kb on + strand at 4303.976 kb on + strand at 4304.134 kb on + strand, within Psest_4124 at 4304.134 kb on + strand, within Psest_4124 at 4304.215 kb on + strand, within Psest_4124 at 4304.216 kb on - strand, within Psest_4124 at 4304.242 kb on + strand, within Psest_4124 at 4304.242 kb on + strand, within Psest_4124 at 4304.366 kb on + strand at 4304.386 kb on + strand at 4304.444 kb on + strand, within Psest_4125 at 4304.444 kb on + strand, within Psest_4125 at 4304.444 kb on + strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.715 kb on + strand, within Psest_4125 at 4304.715 kb on + strand, within Psest_4125 at 4304.716 kb on - strand, within Psest_4125 at 4304.716 kb on - strand, within Psest_4125 at 4304.726 kb on - strand, within Psest_4125
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 4,301,688 - Psest_4122 0.21 -0.5 4,301,688 - Psest_4122 0.21 -2.3 4,301,688 - Psest_4122 0.21 -0.3 4,301,688 - Psest_4122 0.21 +2.7 4,301,837 + Psest_4122 0.33 -0.6 4,301,838 - Psest_4122 0.33 +0.4 4,301,838 - Psest_4122 0.33 -1.0 4,301,838 - Psest_4122 0.33 -0.4 4,301,841 - Psest_4122 0.33 -1.6 4,301,873 - Psest_4122 0.35 -0.5 4,301,972 - Psest_4122 0.43 -0.4 4,301,972 - Psest_4122 0.43 -0.3 4,302,017 + Psest_4122 0.47 -0.1 4,302,074 + Psest_4122 0.51 +0.7 4,302,074 + Psest_4122 0.51 -0.1 4,302,074 + Psest_4122 0.51 -0.6 4,302,074 + Psest_4122 0.51 -0.3 4,302,074 + Psest_4122 0.51 +0.3 4,302,075 - Psest_4122 0.51 +0.7 4,302,075 - Psest_4122 0.51 +0.6 4,302,075 - Psest_4122 0.51 -1.2 4,302,116 + Psest_4122 0.54 -2.5 4,302,116 + Psest_4122 0.54 -1.4 4,302,173 + Psest_4122 0.59 +1.2 4,302,173 + Psest_4122 0.59 -0.4 4,302,173 + Psest_4122 0.59 +1.7 4,302,173 + Psest_4122 0.59 +0.4 4,302,173 + Psest_4122 0.59 -0.2 4,302,173 + Psest_4122 0.59 -0.5 4,302,174 - Psest_4122 0.59 +1.5 4,302,174 - Psest_4122 0.59 -0.7 4,302,174 - Psest_4122 0.59 -0.6 4,302,174 - Psest_4122 0.59 +0.2 4,302,174 - Psest_4122 0.59 +1.3 4,302,174 - Psest_4122 0.59 -0.0 4,302,371 + Psest_4122 0.74 -3.1 4,302,371 + Psest_4122 0.74 +0.9 4,302,371 + Psest_4122 0.74 +0.5 4,302,371 + Psest_4122 0.74 -0.3 4,302,372 - Psest_4122 0.74 -1.3 4,302,449 + Psest_4122 0.80 -0.5 4,302,449 + Psest_4122 0.80 -0.5 4,302,450 - Psest_4122 0.80 +0.7 4,302,450 - Psest_4122 0.80 -0.9 4,302,458 + Psest_4122 0.81 -1.2 4,302,461 + Psest_4122 0.81 -1.6 4,302,461 + Psest_4122 0.81 +2.0 4,302,461 + Psest_4122 0.81 +0.2 4,302,461 + Psest_4122 0.81 +0.5 4,302,461 + Psest_4122 0.81 +0.5 4,302,461 + Psest_4122 0.81 -0.6 4,302,461 + Psest_4122 0.81 -1.2 4,302,461 + Psest_4122 0.81 -1.2 4,302,461 + Psest_4122 0.81 +1.2 4,302,461 + Psest_4122 0.81 -1.2 4,302,461 + Psest_4122 0.81 -2.2 4,302,461 + Psest_4122 0.81 -0.8 4,302,461 + Psest_4122 0.81 -0.8 4,302,461 + Psest_4122 0.81 -0.8 4,302,462 - Psest_4122 0.81 -3.5 4,302,462 - Psest_4122 0.81 -1.3 4,302,462 - Psest_4122 0.81 -1.1 4,302,462 - Psest_4122 0.81 -0.4 4,302,462 - Psest_4122 0.81 -0.3 4,302,462 - Psest_4122 0.81 +0.0 4,302,462 - Psest_4122 0.81 -0.9 4,302,462 - Psest_4122 0.81 -0.3 4,302,462 - Psest_4122 0.81 +0.5 4,302,641 + -2.0 4,302,642 - +0.7 4,302,642 - -2.3 4,302,642 - -0.1 4,302,642 - -1.8 4,302,642 - -3.0 4,302,707 + -1.7 4,302,932 - Psest_4123 0.24 -2.6 4,302,992 + Psest_4123 0.29 -1.5 4,303,021 + Psest_4123 0.32 +0.3 4,303,081 + Psest_4123 0.38 -0.6 4,303,081 + Psest_4123 0.38 -2.3 4,303,082 - Psest_4123 0.38 -0.8 4,303,082 - Psest_4123 0.38 -1.6 4,303,107 - Psest_4123 0.40 -1.4 4,303,223 + Psest_4123 0.51 -0.6 4,303,224 - Psest_4123 0.51 -0.9 4,303,224 - Psest_4123 0.51 -0.6 4,303,397 + Psest_4123 0.68 -1.5 4,303,398 - Psest_4123 0.68 -3.0 4,303,527 + Psest_4123 0.80 -1.2 4,303,527 + Psest_4123 0.80 -1.9 4,303,528 - Psest_4123 0.80 +0.3 4,303,528 - Psest_4123 0.80 -1.0 4,303,528 - Psest_4123 0.80 -2.5 4,303,528 - Psest_4123 0.80 -3.6 4,303,563 + Psest_4123 0.83 -2.5 4,303,883 + -1.4 4,303,976 + -1.6 4,303,976 + -1.1 4,304,134 + Psest_4124 0.46 +0.3 4,304,134 + Psest_4124 0.46 -0.3 4,304,215 + Psest_4124 0.71 -0.4 4,304,216 - Psest_4124 0.71 -3.7 4,304,242 + Psest_4124 0.80 -0.3 4,304,242 + Psest_4124 0.80 -1.8 4,304,366 + -0.2 4,304,386 + -1.2 4,304,444 + Psest_4125 0.13 +0.2 4,304,444 + Psest_4125 0.13 -1.1 4,304,444 + Psest_4125 0.13 -0.4 4,304,445 - Psest_4125 0.13 -1.0 4,304,445 - Psest_4125 0.13 -2.3 4,304,445 - Psest_4125 0.13 -1.1 4,304,445 - Psest_4125 0.13 -0.2 4,304,715 + Psest_4125 0.71 +0.2 4,304,715 + Psest_4125 0.71 -2.0 4,304,716 - Psest_4125 0.71 +0.5 4,304,716 - Psest_4125 0.71 -0.8 4,304,726 - Psest_4125 0.73 -0.3
Or see this region's nucleotide sequence