Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4048

Experiment: nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 250 mM
4,220,882	+		Psest_4047	0.44	-0.7
4,220,946	+		Psest_4047	0.48	+0.3
4,220,946	+		Psest_4047	0.48	-0.4
4,220,946	+		Psest_4047	0.48	+0.9
4,220,946	+		Psest_4047	0.48	+0.2
4,220,946	+		Psest_4047	0.48	-0.2
4,221,192	+		Psest_4047	0.65	+0.1
4,221,192	+		Psest_4047	0.65	+1.3
4,221,193	-		Psest_4047	0.65	+1.2
4,221,213	+		Psest_4047	0.67	-0.1
4,221,269	+		Psest_4047	0.71	-3.6
4,221,269	+		Psest_4047	0.71	-1.5
4,221,269	+		Psest_4047	0.71	-2.7
4,221,270	-		Psest_4047	0.71	+2.0
4,221,270	-		Psest_4047	0.71	-2.9
4,221,387	+		Psest_4047	0.79	-1.5
4,221,388	-		Psest_4047	0.79	-1.5
4,221,388	-		Psest_4047	0.79	-2.8
4,221,460	-		Psest_4047	0.84	-0.8
4,221,463	-		Psest_4047	0.84	+0.3
4,221,463	-		Psest_4047	0.84	-1.7
4,221,463	-		Psest_4047	0.84	+0.1
4,221,463	-		Psest_4047	0.84	-0.5
4,221,463	-		Psest_4047	0.84	-1.2
4,221,463	-		Psest_4047	0.84	-2.2
4,221,471	-		Psest_4047	0.85	-1.0
4,221,478	+		Psest_4047	0.86	-0.2
4,221,542	-				-1.4
4,221,556	+				-1.3
4,221,557	-				+1.6
4,221,614	+				-1.8
4,221,820	+				-1.4
4,221,821	-				-0.8
4,221,821	-				+1.1
4,221,821	-				-2.2
4,221,821	-				+0.2
4,221,821	-				-1.2
4,221,905	+		Psest_4048	0.14	-1.2
4,221,905	+		Psest_4048	0.14	+1.6
4,221,905	+		Psest_4048	0.14	-0.0
4,221,993	+		Psest_4048	0.19	-1.2
4,221,993	+		Psest_4048	0.19	-0.7
4,221,993	+		Psest_4048	0.19	+0.0
4,221,995	+		Psest_4048	0.19	-1.0
4,221,995	+		Psest_4048	0.19	+0.2
4,221,995	+		Psest_4048	0.19	-0.3
4,222,077	+		Psest_4048	0.24	-1.5
4,222,077	+		Psest_4048	0.24	+1.2
4,222,160	+		Psest_4048	0.28	+0.7
4,222,160	+		Psest_4048	0.28	-1.4
4,222,160	+		Psest_4048	0.28	-0.3
4,222,160	+		Psest_4048	0.28	-0.6
4,222,160	+		Psest_4048	0.28	-0.3
4,222,160	+		Psest_4048	0.28	-0.3
4,222,160	+		Psest_4048	0.28	+1.3
4,222,160	+		Psest_4048	0.28	-1.2
4,222,160	+		Psest_4048	0.28	-2.1
4,222,160	+		Psest_4048	0.28	-0.7
4,222,160	+		Psest_4048	0.28	-1.4
4,222,161	-		Psest_4048	0.28	-2.1
4,222,245	+		Psest_4048	0.33	+1.2
4,222,245	+		Psest_4048	0.33	-1.4
4,222,268	+		Psest_4048	0.35	-0.1
4,222,275	+		Psest_4048	0.35	+0.0
4,222,275	+		Psest_4048	0.35	-0.8
4,222,275	+		Psest_4048	0.35	-1.5
4,222,275	+		Psest_4048	0.35	-1.7
4,222,275	+		Psest_4048	0.35	-1.0
4,222,275	+		Psest_4048	0.35	-1.0
4,222,275	+		Psest_4048	0.35	+0.6
4,222,275	+		Psest_4048	0.35	+0.7
4,222,275	+		Psest_4048	0.35	-0.6
4,222,275	+		Psest_4048	0.35	-0.6
4,222,275	+		Psest_4048	0.35	-1.2
4,222,275	+		Psest_4048	0.35	+0.2
4,222,275	+		Psest_4048	0.35	-1.7
4,222,276	-		Psest_4048	0.35	-0.5
4,222,276	-		Psest_4048	0.35	+0.6
4,222,276	-		Psest_4048	0.35	-0.8
4,222,276	-		Psest_4048	0.35	-1.7
4,222,276	-		Psest_4048	0.35	-3.1
4,222,276	-		Psest_4048	0.35	-2.3
4,222,276	-		Psest_4048	0.35	-2.5
4,222,276	-		Psest_4048	0.35	-0.5
4,222,276	-		Psest_4048	0.35	-0.2
4,222,276	-		Psest_4048	0.35	-0.8
4,222,276	-		Psest_4048	0.35	-2.6
4,222,276	-		Psest_4048	0.35	-0.2
4,222,276	-		Psest_4048	0.35	-1.2
4,222,276	-		Psest_4048	0.35	-1.2
4,222,276	-		Psest_4048	0.35	-1.7
4,222,371	+		Psest_4048	0.41	+2.4
4,222,397	+		Psest_4048	0.42	-0.7
4,222,397	+		Psest_4048	0.42	-1.1
4,222,397	+		Psest_4048	0.42	-0.2
4,222,397	+		Psest_4048	0.42	+1.1
4,222,398	-		Psest_4048	0.42	-0.1
4,222,398	-		Psest_4048	0.42	-1.0
4,222,398	-		Psest_4048	0.42	-2.7
4,222,398	-		Psest_4048	0.42	-0.1
4,222,533	-		Psest_4048	0.50	-3.2
4,222,555	-		Psest_4048	0.51	+1.1
4,222,637	+		Psest_4048	0.56	+0.3
4,222,638	-		Psest_4048	0.56	+0.9
4,222,700	+		Psest_4048	0.60	-0.3
4,222,700	+		Psest_4048	0.60	-0.0
4,222,701	-		Psest_4048	0.60	+0.9
4,222,703	+		Psest_4048	0.60	-0.4
4,222,704	-		Psest_4048	0.60	-0.8
4,222,704	-		Psest_4048	0.60	-1.4
4,222,704	-		Psest_4048	0.60	-2.1
4,222,751	+		Psest_4048	0.63	-0.5
4,222,751	+		Psest_4048	0.63	+0.2
4,222,751	+		Psest_4048	0.63	-1.9
4,222,751	+		Psest_4048	0.63	-0.7
4,222,751	+		Psest_4048	0.63	-1.1
4,222,752	-		Psest_4048	0.63	-1.3
4,222,752	-		Psest_4048	0.63	-1.7
4,222,752	-		Psest_4048	0.63	+0.2
4,222,752	-		Psest_4048	0.63	-0.3
4,222,752	-		Psest_4048	0.63	-1.0
4,222,757	+		Psest_4048	0.63	+4.5
4,222,757	+		Psest_4048	0.63	-1.5
4,222,757	+		Psest_4048	0.63	-2.9
4,222,758	-		Psest_4048	0.63	-2.1
4,222,787	-		Psest_4048	0.65	-1.5
4,222,806	+		Psest_4048	0.66	+0.6
4,222,808	+		Psest_4048	0.66	-2.3
4,222,808	+		Psest_4048	0.66	+0.1
4,222,808	+		Psest_4048	0.66	+0.1
4,222,808	+		Psest_4048	0.66	-0.5
4,222,808	+		Psest_4048	0.66	-1.0
4,222,808	+		Psest_4048	0.66	-0.2
4,222,808	+		Psest_4048	0.66	+1.2
4,222,808	+		Psest_4048	0.66	+0.2
4,222,808	+		Psest_4048	0.66	-0.1
4,222,808	+		Psest_4048	0.66	+0.8
4,222,808	+		Psest_4048	0.66	-0.5
4,222,808	+		Psest_4048	0.66	+1.8
4,222,808	+		Psest_4048	0.66	-1.0
4,222,808	+		Psest_4048	0.66	+2.0
4,222,808	+		Psest_4048	0.66	-0.9
4,222,808	+		Psest_4048	0.66	+0.6
4,222,808	+		Psest_4048	0.66	-0.5
4,222,809	-		Psest_4048	0.66	-1.2
4,222,809	-		Psest_4048	0.66	+0.6
4,222,809	-		Psest_4048	0.66	-2.3
4,222,809	-		Psest_4048	0.66	-0.2
4,222,809	-		Psest_4048	0.66	-0.0
4,222,809	-		Psest_4048	0.66	-1.7
4,222,809	-		Psest_4048	0.66	-1.5
4,222,809	-		Psest_4048	0.66	+0.8
4,222,809	-		Psest_4048	0.66	-2.7
4,222,809	-		Psest_4048	0.66	-1.5
4,222,809	-		Psest_4048	0.66	-1.5
4,222,809	-		Psest_4048	0.66	-1.4
4,222,809	-		Psest_4048	0.66	-1.8
4,222,809	-		Psest_4048	0.66	-2.1
4,222,809	-		Psest_4048	0.66	+0.4
4,222,812	+		Psest_4048	0.66	+0.8
4,222,812	+		Psest_4048	0.66	-2.7
4,222,812	+		Psest_4048	0.66	-2.2
4,222,812	+		Psest_4048	0.66	-0.3
4,222,812	+		Psest_4048	0.66	+0.2
4,222,812	+		Psest_4048	0.66	-0.4
4,222,812	+		Psest_4048	0.66	-0.4
4,222,812	+		Psest_4048	0.66	-0.8
4,222,812	+		Psest_4048	0.66	-0.7
4,222,813	-		Psest_4048	0.66	-2.3
4,222,813	-		Psest_4048	0.66	-2.6
4,222,821	+		Psest_4048	0.67	+0.4
4,222,899	+		Psest_4048	0.71	+0.8
4,222,900	-		Psest_4048	0.72	-1.2
4,223,102	+		Psest_4048	0.83	+0.2
4,223,102	+		Psest_4048	0.83	-0.4
4,223,102	+		Psest_4048	0.83	-0.8
4,223,102	+		Psest_4048	0.83	+0.1
4,223,102	+		Psest_4048	0.83	+0.4
4,223,102	+		Psest_4048	0.83	-1.0
4,223,102	+		Psest_4048	0.83	+0.1
4,223,103	-		Psest_4048	0.83	-3.0
4,223,103	-		Psest_4048	0.83	+0.3
4,223,103	-		Psest_4048	0.83	-0.4
4,223,103	-		Psest_4048	0.83	-1.9
4,223,103	-		Psest_4048	0.83	-1.8
4,223,103	-		Psest_4048	0.83	-0.5
4,223,103	-		Psest_4048	0.83	-1.7
4,223,103	-		Psest_4048	0.83	-0.5
4,223,103	-		Psest_4048	0.83	-1.4
4,223,103	-		Psest_4048	0.83	-0.8
4,223,103	-		Psest_4048	0.83	-1.5
4,223,105	+		Psest_4048	0.83	-1.2
4,223,105	+		Psest_4048	0.83	-1.7
4,223,105	+		Psest_4048	0.83	+0.8
4,223,106	-		Psest_4048	0.84	-1.9
4,223,113	+		Psest_4048	0.84	+2.1
4,223,113	+		Psest_4048	0.84	-1.1
4,223,113	+		Psest_4048	0.84	-0.1
4,223,114	-		Psest_4048	0.84	-0.2
4,223,114	-		Psest_4048	0.84	+1.3
4,223,114	-		Psest_4048	0.84	-1.9
4,223,114	-		Psest_4048	0.84	-0.1
4,223,184	+		Psest_4048	0.88	-0.8
4,223,184	+		Psest_4048	0.88	+1.8
4,223,189	+		Psest_4048	0.88	-0.5
4,223,189	+		Psest_4048	0.88	-1.0
4,223,189	+		Psest_4048	0.88	-1.9
4,223,190	-		Psest_4048	0.88	+0.8
4,223,190	-		Psest_4048	0.88	-2.7
4,223,190	-		Psest_4048	0.88	-0.2
4,223,190	-		Psest_4048	0.88	+0.2
4,223,190	-		Psest_4048	0.88	-1.2
4,223,190	-		Psest_4048	0.88	-3.8
4,223,190	-		Psest_4048	0.88	-1.4
4,223,190	-		Psest_4048	0.88	-1.2
4,223,190	-		Psest_4048	0.88	+0.5
4,223,258	+				-2.6
4,223,258	+				-1.2
4,223,258	+				-1.7
4,223,258	+				-2.0
4,223,258	+				-2.8
4,223,258	+				-0.2
4,223,258	+				-3.1
4,223,258	+				-2.3
4,223,258	+				-0.7
4,223,258	+				-1.7
4,223,258	+				-0.2
4,223,258	+				-0.4
4,223,259	-				-1.9
4,223,259	-				-2.0
4,223,259	-				-0.8
4,223,259	-				-2.0
4,223,259	-				-1.8
4,223,259	-				-3.2
4,223,259	-				-0.1
4,223,259	-				-2.2
4,223,259	-				-1.5
4,223,259	-				+1.8
4,223,259	-				-0.9
4,223,294	+				-2.6
4,223,294	+				-0.8
4,223,294	+				-0.4
4,223,401	+				-0.6
4,223,404	+				-0.5
4,223,404	+				-0.9
4,223,404	+				+1.1
4,223,404	+				-0.6
4,223,404	+				-2.1
4,223,404	+				-2.4
4,223,408	+				-0.2
4,223,409	-				-2.6
4,223,409	-				-0.4
4,223,409	-				-1.5
4,223,409	-				-1.5
4,223,479	+				-1.7
4,223,479	+				+0.4
4,223,479	+				-0.5
4,223,479	+				-2.2
4,223,479	+				-0.2
4,223,479	+				-2.0
4,223,480	-				-0.8
4,223,480	-				+1.8
4,223,480	-				-2.4
4,223,480	-				-1.1
4,223,480	-				+0.3
4,223,480	-				-2.8
4,223,480	-				-1.2
4,223,480	-				-1.7
4,223,482	-				+0.5
4,223,482	-				-1.0
4,223,482	-				+0.3
4,223,482	-				-0.5
4,223,482	-				-0.4
4,223,482	-				-1.3
4,223,482	-				+0.8
4,223,496	+				-1.8
4,223,497	-				-2.5
4,223,497	-				-3.1
4,223,571	-				+0.6
4,223,639	-				-0.2
4,223,639	-				-1.0
4,223,639	-				-0.8
4,223,639	-				+0.2
4,223,639	-				-0.5
4,223,649	-				-0.5
4,223,649	-				-0.8
4,223,649	-				-3.3
4,223,716	-				-0.9
4,223,718	+				+1.8
4,223,718	+				-0.4
4,223,718	+				-0.8
4,223,859	+				-0.7
4,223,859	+				+0.2
4,223,859	+				-0.2
4,223,860	-				-1.4
4,223,908	-				-1.5
4,223,908	-				-2.0
4,224,047	+		Psest_4049	0.35	+0.8
4,224,165	-		Psest_4049	0.63	-0.8