Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3940 and Psest_3941 overlap by 1 nucleotides Psest_3941 and Psest_3942 overlap by 4 nucleotides Psest_3942 and Psest_3943 are separated by 50 nucleotides Psest_3943 and Psest_3944 overlap by 8 nucleotides Psest_3944 and Psest_3945 are separated by 20 nucleotides
Psest_3940: Psest_3940 - ubiquinone/menaquinone biosynthesis methyltransferases, at 4,111,860 to 4,112,630
_3940
Psest_3941: Psest_3941 - Uncharacterized protein conserved in bacteria, at 4,112,630 to 4,113,253
_3941
Psest_3942: Psest_3942 - 2-polyprenylphenol 6-hydroxylase, at 4,113,250 to 4,114,860
_3942
Psest_3943: Psest_3943 - Phosphoribosyl-AMP cyclohydrolase, at 4,114,911 to 4,115,306
_3943
Psest_3944: Psest_3944 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 4,115,299 to 4,115,631
_3944
Psest_3945: Psest_3945 - twin arginine-targeting protein translocase, TatA/E family, at 4,115,652 to 4,115,882
_3945
Position (kb) 4113
4114
4115 Strain fitness (log2 ratio) -1
0
1
2 at 4114.974 kb on + strand, within Psest_3943 at 4114.974 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.056 kb on - strand, within Psest_3943 at 4115.217 kb on + strand, within Psest_3943 at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.368 kb on + strand, within Psest_3944 at 4115.383 kb on + strand, within Psest_3944 at 4115.383 kb on + strand, within Psest_3944 at 4115.491 kb on + strand, within Psest_3944 at 4115.491 kb on + strand, within Psest_3944
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 4,114,974 + Psest_3943 0.16 +0.9 4,114,974 + Psest_3943 0.16 +0.6 4,115,055 + Psest_3943 0.36 +0.3 4,115,055 + Psest_3943 0.36 +2.2 4,115,055 + Psest_3943 0.36 -0.5 4,115,055 + Psest_3943 0.36 -1.1 4,115,055 + Psest_3943 0.36 -0.1 4,115,055 + Psest_3943 0.36 -0.7 4,115,055 + Psest_3943 0.36 -0.5 4,115,055 + Psest_3943 0.36 +0.9 4,115,056 - Psest_3943 0.37 +1.5 4,115,217 + Psest_3943 0.77 +0.3 4,115,283 + -0.5 4,115,283 + -0.0 4,115,283 + +0.1 4,115,283 + -0.7 4,115,283 + -0.4 4,115,283 + -1.1 4,115,368 + Psest_3944 0.21 +0.3 4,115,383 + Psest_3944 0.25 +2.3 4,115,383 + Psest_3944 0.25 +0.3 4,115,491 + Psest_3944 0.58 -0.0 4,115,491 + Psest_3944 0.58 +1.9
Or see this region's nucleotide sequence