Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3728

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3727 and Psest_3728 are separated by 73 nucleotidesPsest_3728 and Psest_3729 are separated by 123 nucleotides Psest_3727: Psest_3727 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 3,897,910 to 3,898,881 _3727 Psest_3728: Psest_3728 - UbiD family decarboxylases, at 3,898,955 to 3,900,421 _3728 Psest_3729: Psest_3729 - transcription termination factor Rho, at 3,900,545 to 3,901,804 _3729 Position (kb) 3898 3899 3900 3901Strain fitness (log2 ratio) -2 -1 0 1 2at 3897.998 kb on + strandat 3897.998 kb on + strandat 3897.998 kb on + strandat 3897.998 kb on + strandat 3898.025 kb on + strand, within Psest_3727at 3898.025 kb on + strand, within Psest_3727at 3898.026 kb on - strand, within Psest_3727at 3898.175 kb on + strand, within Psest_3727at 3898.175 kb on + strand, within Psest_3727at 3898.561 kb on + strand, within Psest_3727at 3898.561 kb on + strand, within Psest_3727at 3898.562 kb on - strand, within Psest_3727at 3898.758 kb on + strand, within Psest_3727at 3898.759 kb on - strand, within Psest_3727at 3898.872 kb on + strandat 3898.872 kb on + strandat 3898.872 kb on + strandat 3898.873 kb on - strandat 3898.893 kb on - strandat 3898.952 kb on - strandat 3900.546 kb on + strandat 3900.546 kb on + strandat 3900.546 kb on + strandat 3900.546 kb on + strandat 3900.546 kb on + strandat 3900.546 kb on + strandat 3900.547 kb on - strandat 3900.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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3,897,998 + -2.0
3,897,998 + +0.9
3,897,998 + +0.6
3,897,998 + -0.3
3,898,025 + Psest_3727 0.12 +1.4
3,898,025 + Psest_3727 0.12 -1.1
3,898,026 - Psest_3727 0.12 +1.1
3,898,175 + Psest_3727 0.27 -0.6
3,898,175 + Psest_3727 0.27 -0.0
3,898,561 + Psest_3727 0.67 +0.7
3,898,561 + Psest_3727 0.67 -0.4
3,898,562 - Psest_3727 0.67 +0.8
3,898,758 + Psest_3727 0.87 +0.9
3,898,759 - Psest_3727 0.87 -1.5
3,898,872 + +2.0
3,898,872 + -0.1
3,898,872 + -0.8
3,898,873 - +0.7
3,898,893 - +0.2
3,898,952 - -0.7
3,900,546 + +0.6
3,900,546 + +1.6
3,900,546 + +1.8
3,900,546 + +2.3
3,900,546 + -0.5
3,900,546 + -2.2
3,900,547 - +1.7
3,900,547 - +0.4

Or see this region's nucleotide sequence