Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3665

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3664 and Psest_3665 are separated by 90 nucleotidesPsest_3665 and Psest_3666 overlap by 26 nucleotides Psest_3664: Psest_3664 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 3,826,170 to 3,827,228 _3664 Psest_3665: Psest_3665 - Organic solvent tolerance protein OstA, at 3,827,319 to 3,830,111 _3665 Psest_3666: Psest_3666 - Parvulin-like peptidyl-prolyl isomerase, at 3,830,086 to 3,831,399 _3666 Position (kb) 3827 3828 3829 3830 3831Strain fitness (log2 ratio) -1 0 1at 3826.708 kb on + strand, within Psest_3664at 3826.861 kb on + strand, within Psest_3664at 3826.861 kb on + strand, within Psest_3664at 3826.862 kb on - strand, within Psest_3664at 3830.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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3,826,708 + Psest_3664 0.51 -1.5
3,826,861 + Psest_3664 0.65 -1.4
3,826,861 + Psest_3664 0.65 +1.1
3,826,862 - Psest_3664 0.65 -1.1
3,830,035 + -1.1

Or see this region's nucleotide sequence