Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2509

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2508 and Psest_2509 are separated by 313 nucleotidesPsest_2509 and Psest_2510 are separated by 181 nucleotides Psest_2508: Psest_2508 - DNA ligase, NAD-dependent, at 2,682,080 to 2,684,455 _2508 Psest_2509: Psest_2509 - cell division protein ZipA, at 2,684,769 to 2,685,590 _2509 Psest_2510: Psest_2510 - chromosome segregation protein SMC, common bacterial type, at 2,685,772 to 2,689,260 _2510 Position (kb) 2684 2685 2686Strain fitness (log2 ratio) -1 0 1 2at 2684.649 kb on + strandat 2684.672 kb on - strandat 2684.768 kb on - strandat 2685.619 kb on - strandat 2685.900 kb on - strandat 2685.900 kb on - strandat 2685.900 kb on - strandat 2685.900 kb on - strandat 2685.900 kb on - strandat 2685.945 kb on - strandat 2686.136 kb on - strand, within Psest_2510

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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2,684,649 + -1.7
2,684,672 - -1.0
2,684,768 - -0.6
2,685,619 - -0.7
2,685,900 - -0.9
2,685,900 - +1.6
2,685,900 - +1.9
2,685,900 - +2.6
2,685,900 - -0.1
2,685,945 - -0.1
2,686,136 - Psest_2510 0.10 +0.9

Or see this region's nucleotide sequence