Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0217

Experiment: nitrate 250 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0216 and Psest_0217 are separated by 166 nucleotidesPsest_0217 and Psest_0218 are separated by 9 nucleotidesPsest_0218 and Psest_0219 are separated by 223 nucleotides Psest_0216: Psest_0216 - Predicted permeases, at 222,666 to 223,574 _0216 Psest_0217: Psest_0217 - diguanylate cyclase (GGDEF) domain, at 223,741 to 224,955 _0217 Psest_0218: Psest_0218 - Acyl-CoA hydrolase, at 224,965 to 225,366 _0218 Psest_0219: Psest_0219 - phosphate binding protein, at 225,590 to 226,558 _0219 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 222.781 kb on + strand, within Psest_0216at 222.781 kb on + strandat 222.781 kb on + strand, within Psest_0216at 222.782 kb on - strand, within Psest_0216at 222.937 kb on - strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.256 kb on - strand, within Psest_0216at 223.256 kb on - strand, within Psest_0216at 223.424 kb on + strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.519 kb on + strandat 223.588 kb on + strandat 223.589 kb on - strandat 223.589 kb on - strandat 223.589 kb on - strandat 223.656 kb on + strandat 223.656 kb on + strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.759 kb on + strandat 223.759 kb on + strandat 223.933 kb on + strand, within Psest_0217at 223.940 kb on - strand, within Psest_0217at 224.050 kb on + strand, within Psest_0217at 224.050 kb on + strand, within Psest_0217at 224.050 kb on + strand, within Psest_0217at 224.051 kb on - strand, within Psest_0217at 224.051 kb on - strand, within Psest_0217at 224.094 kb on - strand, within Psest_0217at 224.150 kb on + strand, within Psest_0217at 224.151 kb on - strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.336 kb on - strand, within Psest_0217at 224.336 kb on - strand, within Psest_0217at 224.372 kb on - strand, within Psest_0217at 224.372 kb on - strand, within Psest_0217at 224.384 kb on - strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.698 kb on + strand, within Psest_0217at 224.698 kb on + strand, within Psest_0217at 224.698 kb on + strand, within Psest_0217at 224.698 kb on + strand, within Psest_0217at 224.698 kb on + strand, within Psest_0217at 224.699 kb on - strand, within Psest_0217at 224.699 kb on - strand, within Psest_0217at 224.699 kb on - strand, within Psest_0217at 224.699 kb on - strand, within Psest_0217at 224.762 kb on + strand, within Psest_0217at 224.762 kb on + strand, within Psest_0217at 224.763 kb on - strand, within Psest_0217at 224.763 kb on - strand, within Psest_0217at 224.766 kb on + strand, within Psest_0217at 224.766 kb on + strand, within Psest_0217at 224.766 kb on + strand, within Psest_0217at 224.767 kb on - strand, within Psest_0217at 224.854 kb on + strandat 224.879 kb on - strandat 225.128 kb on + strand, within Psest_0218at 225.129 kb on - strand, within Psest_0218at 225.129 kb on - strand, within Psest_0218at 225.129 kb on - strand, within Psest_0218at 225.129 kb on - strand, within Psest_0218at 225.129 kb on - strand, within Psest_0218at 225.129 kb on - strand, within Psest_0218at 225.269 kb on + strand, within Psest_0218at 225.269 kb on + strand, within Psest_0218at 225.417 kb on - strandat 225.417 kb on - strandat 225.438 kb on + strandat 225.439 kb on - strandat 225.439 kb on - strandat 225.516 kb on + strandat 225.516 kb on + strandat 225.516 kb on + strandat 225.516 kb on + strandat 225.516 kb on + strandat 225.516 kb on + strandat 225.517 kb on - strandat 225.517 kb on - strandat 225.517 kb on - strandat 225.517 kb on - strandat 225.528 kb on - strandat 225.540 kb on + strandat 225.578 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
remove
222,781 + Psest_0216 0.13 +0.8
222,781 + +1.8
222,781 + Psest_0216 0.13 +0.8
222,782 - Psest_0216 0.13 +0.8
222,937 - Psest_0216 0.30 -2.1
223,255 + Psest_0216 0.65 -2.8
223,255 + Psest_0216 0.65 -0.2
223,255 + Psest_0216 0.65 -0.9
223,255 + Psest_0216 0.65 -1.9
223,256 - Psest_0216 0.65 +0.8
223,256 - Psest_0216 0.65 +1.8
223,424 + Psest_0216 0.83 +0.2
223,457 - Psest_0216 0.87 +0.2
223,457 - Psest_0216 0.87 -2.2
223,457 - Psest_0216 0.87 +0.6
223,457 - Psest_0216 0.87 -1.5
223,457 - Psest_0216 0.87 +0.8
223,519 + -0.0
223,588 + +1.8
223,589 - +0.8
223,589 - -0.5
223,589 - -0.5
223,656 + -0.5
223,656 + -0.5
223,657 - +1.2
223,657 - +1.8
223,657 - +0.8
223,657 - +0.2
223,657 - +1.8
223,749 + +0.9
223,749 + +0.6
223,749 + -0.8
223,749 + +0.7
223,749 + +0.5
223,749 + +1.3
223,749 + +1.2
223,749 + -0.2
223,749 + +0.7
223,749 + +0.2
223,750 - +0.8
223,750 - -0.8
223,750 - -0.2
223,750 - +0.8
223,750 - -0.2
223,750 - -1.4
223,750 - -2.2
223,750 - +0.8
223,759 + +1.4
223,759 + -2.0
223,933 + Psest_0217 0.16 +1.8
223,940 - Psest_0217 0.16 -0.8
224,050 + Psest_0217 0.25 +1.2
224,050 + Psest_0217 0.25 +1.2
224,050 + Psest_0217 0.25 +0.1
224,051 - Psest_0217 0.26 -1.2
224,051 - Psest_0217 0.26 -0.5
224,094 - Psest_0217 0.29 -0.3
224,150 + Psest_0217 0.34 -1.4
224,151 - Psest_0217 0.34 -0.2
224,332 + Psest_0217 0.49 +1.2
224,332 + Psest_0217 0.49 -0.2
224,332 + Psest_0217 0.49 +1.1
224,332 + Psest_0217 0.49 -0.5
224,332 + Psest_0217 0.49 -0.1
224,332 + Psest_0217 0.49 +0.2
224,332 + Psest_0217 0.49 -1.2
224,332 + Psest_0217 0.49 -0.2
224,333 - Psest_0217 0.49 +0.4
224,333 - Psest_0217 0.49 -2.0
224,333 - Psest_0217 0.49 -0.2
224,333 - Psest_0217 0.49 -0.7
224,333 - Psest_0217 0.49 -1.1
224,335 + Psest_0217 0.49 -0.5
224,335 + Psest_0217 0.49 +0.3
224,335 + Psest_0217 0.49 +1.5
224,335 + Psest_0217 0.49 +0.2
224,335 + Psest_0217 0.49 -0.1
224,335 + Psest_0217 0.49 -0.2
224,335 + Psest_0217 0.49 -0.8
224,336 - Psest_0217 0.49 -1.0
224,336 - Psest_0217 0.49 -1.0
224,372 - Psest_0217 0.52 +0.8
224,372 - Psest_0217 0.52 +0.2
224,384 - Psest_0217 0.53 +0.2
224,566 + Psest_0217 0.68 +2.5
224,566 + Psest_0217 0.68 -0.3
224,566 + Psest_0217 0.68 -2.0
224,566 + Psest_0217 0.68 +0.8
224,566 + Psest_0217 0.68 -1.4
224,566 + Psest_0217 0.68 +0.3
224,567 - Psest_0217 0.68 -0.7
224,567 - Psest_0217 0.68 +0.8
224,567 - Psest_0217 0.68 -0.2
224,567 - Psest_0217 0.68 +0.1
224,567 - Psest_0217 0.68 -1.0
224,567 - Psest_0217 0.68 +2.8
224,567 - Psest_0217 0.68 +0.8
224,698 + Psest_0217 0.79 -0.8
224,698 + Psest_0217 0.79 -1.5
224,698 + Psest_0217 0.79 +0.7
224,698 + Psest_0217 0.79 -0.7
224,698 + Psest_0217 0.79 -2.1
224,699 - Psest_0217 0.79 -0.8
224,699 - Psest_0217 0.79 -0.7
224,699 - Psest_0217 0.79 -1.0
224,699 - Psest_0217 0.79 +0.2
224,762 + Psest_0217 0.84 -1.4
224,762 + Psest_0217 0.84 -1.9
224,763 - Psest_0217 0.84 -0.8
224,763 - Psest_0217 0.84 -1.3
224,766 + Psest_0217 0.84 +1.8
224,766 + Psest_0217 0.84 -1.4
224,766 + Psest_0217 0.84 -2.0
224,767 - Psest_0217 0.84 +0.2
224,854 + -0.4
224,879 - -1.9
225,128 + Psest_0218 0.41 +0.8
225,129 - Psest_0218 0.41 -1.5
225,129 - Psest_0218 0.41 -1.4
225,129 - Psest_0218 0.41 -0.5
225,129 - Psest_0218 0.41 -1.7
225,129 - Psest_0218 0.41 -1.8
225,129 - Psest_0218 0.41 +0.8
225,269 + Psest_0218 0.76 -1.4
225,269 + Psest_0218 0.76 -2.2
225,417 - +0.8
225,417 - +0.9
225,438 + -2.2
225,439 - +0.2
225,439 - +1.0
225,516 + -1.3
225,516 + +1.7
225,516 + -1.7
225,516 + -0.2
225,516 + +1.5
225,516 + +0.5
225,517 - -0.7
225,517 - -1.2
225,517 - -0.7
225,517 - -0.5
225,528 - +0.2
225,540 + -1.7
225,578 + -0.8

Or see this region's nucleotide sequence