Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0178

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0176 and Psest_0177 are separated by 23 nucleotidesPsest_0177 and Psest_0178 overlap by 1 nucleotidesPsest_0178 and Psest_0179 are separated by 110 nucleotides Psest_0176: Psest_0176 - 2-polyprenyl-6-methoxyphenol 4-hydroxylase, at 169,391 to 170,569 _0176 Psest_0177: Psest_0177 - hypothetical protein, at 170,593 to 171,081 _0177 Psest_0178: Psest_0178 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 171,081 to 172,301 _0178 Psest_0179: Psest_0179 - ABC-type Fe3+ transport system, periplasmic component, at 172,412 to 173,413 _0179 Position (kb) 171 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 170.563 kb on - strandat 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.717 kb on + strand, within Psest_0177at 170.718 kb on - strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.779 kb on + strand, within Psest_0177at 170.780 kb on - strand, within Psest_0177at 170.780 kb on - strand, within Psest_0177at 170.780 kb on - strand, within Psest_0177at 170.836 kb on + strand, within Psest_0177at 170.836 kb on + strand, within Psest_0177at 170.836 kb on + strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.896 kb on + strand, within Psest_0177at 170.897 kb on - strand, within Psest_0177at 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.488 kb on + strandat 172.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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170,563 - -0.7
170,688 + Psest_0177 0.19 +1.8
170,688 + Psest_0177 0.19 -2.9
170,688 + Psest_0177 0.19 -0.7
170,688 + Psest_0177 0.19 -2.0
170,688 + Psest_0177 0.19 -0.5
170,688 + Psest_0177 0.19 +0.2
170,688 + Psest_0177 0.19 -1.7
170,688 + Psest_0177 0.19 +1.8
170,688 + Psest_0177 0.19 +1.2
170,688 + Psest_0177 0.19 -2.7
170,688 + Psest_0177 0.19 +0.5
170,688 + Psest_0177 0.19 -0.8
170,688 + Psest_0177 0.19 -0.8
170,689 - Psest_0177 0.20 -2.4
170,689 - Psest_0177 0.20 -2.0
170,689 - Psest_0177 0.20 -3.3
170,689 - Psest_0177 0.20 -2.1
170,689 - Psest_0177 0.20 -1.7
170,689 - Psest_0177 0.20 -0.4
170,689 - Psest_0177 0.20 -1.2
170,689 - Psest_0177 0.20 -0.2
170,689 - Psest_0177 0.20 -1.3
170,689 - Psest_0177 0.20 -1.6
170,689 - Psest_0177 0.20 -1.5
170,689 - Psest_0177 0.20 -1.9
170,717 + Psest_0177 0.25 +0.5
170,718 - Psest_0177 0.26 -0.5
170,749 + Psest_0177 0.32 -0.5
170,749 + Psest_0177 0.32 -1.0
170,749 + Psest_0177 0.32 -0.5
170,749 + Psest_0177 0.32 -1.3
170,749 + Psest_0177 0.32 -1.2
170,749 + Psest_0177 0.32 +0.9
170,750 - Psest_0177 0.32 -2.2
170,750 - Psest_0177 0.32 -1.0
170,750 - Psest_0177 0.32 -0.4
170,750 - Psest_0177 0.32 -3.4
170,750 - Psest_0177 0.32 -1.4
170,750 - Psest_0177 0.32 -1.5
170,779 + Psest_0177 0.38 +1.2
170,780 - Psest_0177 0.38 -3.8
170,780 - Psest_0177 0.38 +0.8
170,780 - Psest_0177 0.38 -2.4
170,836 + Psest_0177 0.50 -0.2
170,836 + Psest_0177 0.50 -0.6
170,836 + Psest_0177 0.50 -0.8
170,837 - Psest_0177 0.50 +0.8
170,837 - Psest_0177 0.50 -0.5
170,837 - Psest_0177 0.50 -1.0
170,837 - Psest_0177 0.50 -1.7
170,837 - Psest_0177 0.50 -1.7
170,837 - Psest_0177 0.50 -1.2
170,896 + Psest_0177 0.62 +3.1
170,897 - Psest_0177 0.62 -2.6
171,037 + -1.2
171,037 + -0.5
171,037 + +0.2
171,037 + -1.0
171,037 + -1.1
171,037 + -1.7
171,037 + -1.4
171,037 + -0.5
171,038 - -3.6
171,038 - -0.3
171,038 - -1.1
171,038 - -1.5
171,038 - -1.7
171,038 - -2.4
171,038 - -1.1
171,038 - -3.5
171,038 - -0.8
171,041 + -0.1
171,041 + -0.9
171,041 + +1.0
171,041 + -0.2
171,041 + -0.2
171,042 - -1.5
171,042 - -1.5
171,042 - -1.2
171,042 - -3.7
171,042 - -0.7
171,042 - -1.7
172,327 + +0.1
172,327 + -0.7
172,327 + -1.3
172,488 + -0.0
172,488 + -1.5

Or see this region's nucleotide sequence