Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1637

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1635 and Psest_1636 are separated by 93 nucleotidesPsest_1636 and Psest_1637 are separated by 140 nucleotidesPsest_1637 and Psest_1638 are separated by 111 nucleotides Psest_1635: Psest_1635 - Signal transduction histidine kinase, at 1,736,252 to 1,739,005 _1635 Psest_1636: Psest_1636 - putative transporter, required for glycine utilization (from data), at 1,739,099 to 1,739,725 _1636 Psest_1637: Psest_1637 - transcriptional regulator, ArgP family, at 1,739,866 to 1,740,759 _1637 Psest_1638: Psest_1638 - cysteine synthase B, at 1,740,871 to 1,741,773 _1638 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1738.920 kb on + strandat 1738.920 kb on + strandat 1739.216 kb on - strand, within Psest_1636at 1739.244 kb on + strand, within Psest_1636at 1739.245 kb on - strand, within Psest_1636at 1739.315 kb on + strand, within Psest_1636at 1739.315 kb on + strand, within Psest_1636at 1739.533 kb on - strand, within Psest_1636at 1739.576 kb on + strand, within Psest_1636at 1739.577 kb on - strand, within Psest_1636at 1739.703 kb on + strandat 1739.703 kb on + strandat 1739.703 kb on + strandat 1739.703 kb on + strandat 1739.703 kb on + strandat 1739.703 kb on + strandat 1739.704 kb on - strandat 1739.704 kb on - strandat 1739.704 kb on - strandat 1739.710 kb on + strandat 1739.711 kb on - strandat 1739.711 kb on - strandat 1739.825 kb on - strandat 1739.852 kb on - strandat 1740.014 kb on + strand, within Psest_1637at 1740.068 kb on - strand, within Psest_1637at 1740.123 kb on + strand, within Psest_1637at 1740.259 kb on + strand, within Psest_1637at 1740.259 kb on + strand, within Psest_1637at 1740.259 kb on + strand, within Psest_1637at 1740.259 kb on + strand, within Psest_1637at 1740.259 kb on + strand, within Psest_1637at 1740.259 kb on + strand, within Psest_1637at 1740.260 kb on - strand, within Psest_1637at 1740.260 kb on - strand, within Psest_1637at 1740.446 kb on - strand, within Psest_1637at 1740.446 kb on - strand, within Psest_1637at 1740.446 kb on - strand, within Psest_1637at 1740.447 kb on + strand, within Psest_1637at 1740.448 kb on - strand, within Psest_1637at 1740.512 kb on - strand, within Psest_1637at 1740.667 kb on + strand, within Psest_1637at 1740.667 kb on + strand, within Psest_1637at 1740.668 kb on - strand, within Psest_1637at 1740.668 kb on - strand, within Psest_1637at 1740.675 kb on + strandat 1740.676 kb on - strandat 1740.676 kb on - strandat 1740.790 kb on - strandat 1741.756 kb on + strandat 1741.757 kb on - strandat 1741.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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1,738,920 + +2.4
1,738,920 + +1.3
1,739,216 - Psest_1636 0.19 -0.6
1,739,244 + Psest_1636 0.23 -0.2
1,739,245 - Psest_1636 0.23 +2.2
1,739,315 + Psest_1636 0.34 -0.2
1,739,315 + Psest_1636 0.34 -1.0
1,739,533 - Psest_1636 0.69 +0.4
1,739,576 + Psest_1636 0.76 +0.4
1,739,577 - Psest_1636 0.76 +0.6
1,739,703 + -1.3
1,739,703 + +0.7
1,739,703 + +2.9
1,739,703 + +0.7
1,739,703 + +0.2
1,739,703 + +1.1
1,739,704 - -0.2
1,739,704 - -0.5
1,739,704 - -0.2
1,739,710 + +0.8
1,739,711 - -0.5
1,739,711 - -3.3
1,739,825 - +0.9
1,739,852 - +0.2
1,740,014 + Psest_1637 0.17 +0.4
1,740,068 - Psest_1637 0.23 +0.8
1,740,123 + Psest_1637 0.29 -0.7
1,740,259 + Psest_1637 0.44 -1.0
1,740,259 + Psest_1637 0.44 +0.2
1,740,259 + Psest_1637 0.44 -0.6
1,740,259 + Psest_1637 0.44 -0.5
1,740,259 + Psest_1637 0.44 +1.7
1,740,259 + Psest_1637 0.44 +0.2
1,740,260 - Psest_1637 0.44 -1.0
1,740,260 - Psest_1637 0.44 +0.2
1,740,446 - Psest_1637 0.65 +0.8
1,740,446 - Psest_1637 0.65 +0.3
1,740,446 - Psest_1637 0.65 +1.5
1,740,447 + Psest_1637 0.65 -0.1
1,740,448 - Psest_1637 0.65 +1.8
1,740,512 - Psest_1637 0.72 +0.4
1,740,667 + Psest_1637 0.90 -0.3
1,740,667 + Psest_1637 0.90 +1.8
1,740,668 - Psest_1637 0.90 +0.7
1,740,668 - Psest_1637 0.90 +0.4
1,740,675 + +1.4
1,740,676 - -0.3
1,740,676 - -0.8
1,740,790 - +0.8
1,741,756 + +2.4
1,741,757 - +2.8
1,741,757 - +2.7

Or see this region's nucleotide sequence