Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1635 and Psest_1636 are separated by 93 nucleotides Psest_1636 and Psest_1637 are separated by 140 nucleotides Psest_1637 and Psest_1638 are separated by 111 nucleotides
Psest_1635: Psest_1635 - Signal transduction histidine kinase, at 1,736,252 to 1,739,005
_1635
Psest_1636: Psest_1636 - putative transporter, required for glycine utilization (from data) , at 1,739,099 to 1,739,725
_1636
Psest_1637: Psest_1637 - transcriptional regulator, ArgP family, at 1,739,866 to 1,740,759
_1637
Psest_1638: Psest_1638 - cysteine synthase B, at 1,740,871 to 1,741,773
_1638
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1738.920 kb on + strand at 1738.920 kb on + strand at 1739.216 kb on - strand, within Psest_1636 at 1739.244 kb on + strand, within Psest_1636 at 1739.245 kb on - strand, within Psest_1636 at 1739.315 kb on + strand, within Psest_1636 at 1739.315 kb on + strand, within Psest_1636 at 1739.533 kb on - strand, within Psest_1636 at 1739.576 kb on + strand, within Psest_1636 at 1739.577 kb on - strand, within Psest_1636 at 1739.703 kb on + strand at 1739.703 kb on + strand at 1739.703 kb on + strand at 1739.703 kb on + strand at 1739.703 kb on + strand at 1739.703 kb on + strand at 1739.704 kb on - strand at 1739.704 kb on - strand at 1739.704 kb on - strand at 1739.710 kb on + strand at 1739.711 kb on - strand at 1739.711 kb on - strand at 1739.825 kb on - strand at 1739.852 kb on - strand at 1740.014 kb on + strand, within Psest_1637 at 1740.068 kb on - strand, within Psest_1637 at 1740.123 kb on + strand, within Psest_1637 at 1740.259 kb on + strand, within Psest_1637 at 1740.259 kb on + strand, within Psest_1637 at 1740.259 kb on + strand, within Psest_1637 at 1740.259 kb on + strand, within Psest_1637 at 1740.259 kb on + strand, within Psest_1637 at 1740.259 kb on + strand, within Psest_1637 at 1740.260 kb on - strand, within Psest_1637 at 1740.260 kb on - strand, within Psest_1637 at 1740.446 kb on - strand, within Psest_1637 at 1740.446 kb on - strand, within Psest_1637 at 1740.446 kb on - strand, within Psest_1637 at 1740.447 kb on + strand, within Psest_1637 at 1740.448 kb on - strand, within Psest_1637 at 1740.512 kb on - strand, within Psest_1637 at 1740.667 kb on + strand, within Psest_1637 at 1740.667 kb on + strand, within Psest_1637 at 1740.668 kb on - strand, within Psest_1637 at 1740.668 kb on - strand, within Psest_1637 at 1740.675 kb on + strand at 1740.676 kb on - strand at 1740.676 kb on - strand at 1740.790 kb on - strand at 1741.756 kb on + strand at 1741.757 kb on - strand at 1741.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 1,738,920 + +2.4 1,738,920 + +1.3 1,739,216 - Psest_1636 0.19 -0.6 1,739,244 + Psest_1636 0.23 -0.2 1,739,245 - Psest_1636 0.23 +2.2 1,739,315 + Psest_1636 0.34 -0.2 1,739,315 + Psest_1636 0.34 -1.0 1,739,533 - Psest_1636 0.69 +0.4 1,739,576 + Psest_1636 0.76 +0.4 1,739,577 - Psest_1636 0.76 +0.6 1,739,703 + -1.3 1,739,703 + +0.7 1,739,703 + +2.9 1,739,703 + +0.7 1,739,703 + +0.2 1,739,703 + +1.1 1,739,704 - -0.2 1,739,704 - -0.5 1,739,704 - -0.2 1,739,710 + +0.8 1,739,711 - -0.5 1,739,711 - -3.3 1,739,825 - +0.9 1,739,852 - +0.2 1,740,014 + Psest_1637 0.17 +0.4 1,740,068 - Psest_1637 0.23 +0.8 1,740,123 + Psest_1637 0.29 -0.7 1,740,259 + Psest_1637 0.44 -1.0 1,740,259 + Psest_1637 0.44 +0.2 1,740,259 + Psest_1637 0.44 -0.6 1,740,259 + Psest_1637 0.44 -0.5 1,740,259 + Psest_1637 0.44 +1.7 1,740,259 + Psest_1637 0.44 +0.2 1,740,260 - Psest_1637 0.44 -1.0 1,740,260 - Psest_1637 0.44 +0.2 1,740,446 - Psest_1637 0.65 +0.8 1,740,446 - Psest_1637 0.65 +0.3 1,740,446 - Psest_1637 0.65 +1.5 1,740,447 + Psest_1637 0.65 -0.1 1,740,448 - Psest_1637 0.65 +1.8 1,740,512 - Psest_1637 0.72 +0.4 1,740,667 + Psest_1637 0.90 -0.3 1,740,667 + Psest_1637 0.90 +1.8 1,740,668 - Psest_1637 0.90 +0.7 1,740,668 - Psest_1637 0.90 +0.4 1,740,675 + +1.4 1,740,676 - -0.3 1,740,676 - -0.8 1,740,790 - +0.8 1,741,756 + +2.4 1,741,757 - +2.8 1,741,757 - +2.7
Or see this region's nucleotide sequence