Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0157 and Psest_0158 are separated by 230 nucleotides Psest_0158 and Psest_0159 are separated by 3 nucleotides Psest_0159 and Psest_0160 are separated by 2 nucleotides
Psest_0157: Psest_0157 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 155,327 to 156,076
_0157
Psest_0158: Psest_0158 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 156,307 to 157,053
_0158
Psest_0159: Psest_0159 - Uncharacterized protein conserved in bacteria, at 157,057 to 157,848
_0159
Psest_0160: Psest_0160 - C-terminal peptidase (prc), at 157,851 to 159,170
_0160
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 155.368 kb on - strand at 155.438 kb on + strand, within Psest_0157 at 155.439 kb on - strand, within Psest_0157 at 155.540 kb on + strand, within Psest_0157 at 155.540 kb on + strand, within Psest_0157 at 155.576 kb on + strand, within Psest_0157 at 155.576 kb on + strand, within Psest_0157 at 155.576 kb on + strand, within Psest_0157 at 155.577 kb on - strand, within Psest_0157 at 155.603 kb on + strand, within Psest_0157 at 155.603 kb on + strand, within Psest_0157 at 155.603 kb on + strand, within Psest_0157 at 155.603 kb on + strand, within Psest_0157 at 155.604 kb on - strand, within Psest_0157 at 155.604 kb on - strand, within Psest_0157 at 155.744 kb on + strand, within Psest_0157 at 155.744 kb on + strand, within Psest_0157 at 155.744 kb on + strand, within Psest_0157 at 155.744 kb on + strand, within Psest_0157 at 155.744 kb on + strand, within Psest_0157 at 155.744 kb on + strand, within Psest_0157 at 155.745 kb on - strand, within Psest_0157 at 155.745 kb on - strand, within Psest_0157 at 155.745 kb on - strand, within Psest_0157 at 155.759 kb on + strand, within Psest_0157 at 155.759 kb on + strand, within Psest_0157 at 155.760 kb on - strand, within Psest_0157 at 155.760 kb on - strand, within Psest_0157 at 155.760 kb on - strand, within Psest_0157 at 155.760 kb on - strand, within Psest_0157 at 155.951 kb on - strand, within Psest_0157 at 155.963 kb on + strand, within Psest_0157 at 155.964 kb on - strand, within Psest_0157 at 156.069 kb on - strand at 156.069 kb on - strand at 156.323 kb on + strand at 156.344 kb on + strand at 156.345 kb on - strand at 156.345 kb on - strand at 156.345 kb on - strand at 156.442 kb on + strand, within Psest_0158 at 156.443 kb on - strand, within Psest_0158 at 156.443 kb on - strand, within Psest_0158 at 156.443 kb on - strand, within Psest_0158 at 156.443 kb on - strand, within Psest_0158 at 156.553 kb on + strand, within Psest_0158 at 156.554 kb on - strand, within Psest_0158 at 156.554 kb on - strand, within Psest_0158 at 156.554 kb on - strand, within Psest_0158 at 156.652 kb on - strand, within Psest_0158 at 156.736 kb on + strand, within Psest_0158 at 156.736 kb on + strand, within Psest_0158 at 156.874 kb on + strand, within Psest_0158 at 156.987 kb on - strand at 157.059 kb on - strand at 157.065 kb on - strand at 157.435 kb on + strand, within Psest_0159 at 157.435 kb on + strand, within Psest_0159 at 157.436 kb on - strand, within Psest_0159 at 157.436 kb on - strand, within Psest_0159 at 157.537 kb on + strand, within Psest_0159 at 157.537 kb on + strand, within Psest_0159 at 157.732 kb on + strand, within Psest_0159 at 157.790 kb on + strand at 157.791 kb on - strand at 157.792 kb on + strand at 157.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 155,368 - -3.2 155,438 + Psest_0157 0.15 -1.8 155,439 - Psest_0157 0.15 -1.8 155,540 + Psest_0157 0.28 -0.4 155,540 + Psest_0157 0.28 -1.0 155,576 + Psest_0157 0.33 +0.3 155,576 + Psest_0157 0.33 -1.0 155,576 + Psest_0157 0.33 -0.7 155,577 - Psest_0157 0.33 -3.5 155,603 + Psest_0157 0.37 -0.8 155,603 + Psest_0157 0.37 +0.8 155,603 + Psest_0157 0.37 +0.7 155,603 + Psest_0157 0.37 -0.1 155,604 - Psest_0157 0.37 -1.9 155,604 - Psest_0157 0.37 +0.8 155,744 + Psest_0157 0.56 -2.1 155,744 + Psest_0157 0.56 -1.8 155,744 + Psest_0157 0.56 -0.6 155,744 + Psest_0157 0.56 -0.4 155,744 + Psest_0157 0.56 +0.2 155,744 + Psest_0157 0.56 +0.4 155,745 - Psest_0157 0.56 -1.2 155,745 - Psest_0157 0.56 -1.4 155,745 - Psest_0157 0.56 +0.3 155,759 + Psest_0157 0.58 +0.2 155,759 + Psest_0157 0.58 -1.1 155,760 - Psest_0157 0.58 -0.7 155,760 - Psest_0157 0.58 -2.0 155,760 - Psest_0157 0.58 -0.9 155,760 - Psest_0157 0.58 -2.8 155,951 - Psest_0157 0.83 -1.8 155,963 + Psest_0157 0.85 -1.4 155,964 - Psest_0157 0.85 -0.8 156,069 - -0.6 156,069 - -2.3 156,323 + -1.2 156,344 + +0.3 156,345 - -0.9 156,345 - -0.1 156,345 - +0.8 156,442 + Psest_0158 0.18 +1.2 156,443 - Psest_0158 0.18 -1.8 156,443 - Psest_0158 0.18 -1.2 156,443 - Psest_0158 0.18 -0.2 156,443 - Psest_0158 0.18 -1.6 156,553 + Psest_0158 0.33 +0.2 156,554 - Psest_0158 0.33 -2.4 156,554 - Psest_0158 0.33 -0.4 156,554 - Psest_0158 0.33 -2.1 156,652 - Psest_0158 0.46 -1.2 156,736 + Psest_0158 0.57 -0.2 156,736 + Psest_0158 0.57 +0.3 156,874 + Psest_0158 0.76 +1.8 156,987 - -2.6 157,059 - -0.8 157,065 - -1.4 157,435 + Psest_0159 0.48 +0.5 157,435 + Psest_0159 0.48 -3.1 157,436 - Psest_0159 0.48 -1.2 157,436 - Psest_0159 0.48 -1.0 157,537 + Psest_0159 0.61 -0.3 157,537 + Psest_0159 0.61 -0.5 157,732 + Psest_0159 0.85 -1.1 157,790 + -0.5 157,791 - -2.1 157,792 + -1.2 157,793 - -0.2
Or see this region's nucleotide sequence