Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1442

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1441 and Psest_1442 are separated by 47 nucleotidesPsest_1442 and Psest_1443 are separated by 230 nucleotides Psest_1441: Psest_1441 - Curlin associated repeat., at 1,551,536 to 1,552,822 _1441 Psest_1442: Psest_1442 - Curlin associated repeat., at 1,552,870 to 1,553,367 _1442 Psest_1443: Psest_1443 - Uncharacterized protein involved in formation of curli polymers, at 1,553,598 to 1,554,428 _1443 Position (kb) 1552 1553 1554Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1551.894 kb on + strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.344 kb on + strand, within Psest_1441at 1552.371 kb on + strand, within Psest_1441at 1552.371 kb on + strand, within Psest_1441at 1552.371 kb on + strand, within Psest_1441at 1552.372 kb on - strand, within Psest_1441at 1552.372 kb on - strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.482 kb on + strand, within Psest_1441at 1552.483 kb on - strand, within Psest_1441at 1552.483 kb on - strand, within Psest_1441at 1552.483 kb on - strand, within Psest_1441at 1552.499 kb on + strand, within Psest_1441at 1552.799 kb on + strandat 1552.800 kb on - strandat 1552.800 kb on - strandat 1552.845 kb on + strandat 1552.845 kb on + strandat 1552.845 kb on + strandat 1552.845 kb on + strandat 1552.846 kb on - strandat 1552.846 kb on - strandat 1552.846 kb on - strandat 1552.846 kb on - strandat 1552.846 kb on - strandat 1552.846 kb on - strandat 1552.846 kb on - strandat 1552.849 kb on + strandat 1552.849 kb on + strandat 1552.849 kb on + strandat 1552.857 kb on + strandat 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.120 kb on + strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.121 kb on - strand, within Psest_1442at 1553.245 kb on + strand, within Psest_1442at 1553.245 kb on + strand, within Psest_1442at 1553.245 kb on + strand, within Psest_1442at 1553.246 kb on - strand, within Psest_1442at 1553.246 kb on - strand, within Psest_1442at 1553.246 kb on - strand, within Psest_1442at 1553.297 kb on + strand, within Psest_1442at 1553.319 kb on + strandat 1553.342 kb on + strandat 1553.342 kb on + strandat 1553.343 kb on - strandat 1553.343 kb on - strandat 1553.343 kb on - strandat 1553.383 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.401 kb on + strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.402 kb on - strandat 1553.618 kb on - strandat 1553.618 kb on - strandat 1553.618 kb on - strandat 1553.803 kb on + strand, within Psest_1443at 1553.803 kb on + strand, within Psest_1443at 1553.804 kb on - strand, within Psest_1443at 1553.804 kb on - strand, within Psest_1443at 1553.826 kb on - strand, within Psest_1443at 1553.920 kb on + strand, within Psest_1443at 1553.921 kb on - strand, within Psest_1443at 1554.053 kb on + strand, within Psest_1443at 1554.232 kb on + strand, within Psest_1443at 1554.313 kb on + strand, within Psest_1443at 1554.313 kb on + strand, within Psest_1443at 1554.313 kb on + strand, within Psest_1443at 1554.314 kb on - strand, within Psest_1443at 1554.314 kb on - strand, within Psest_1443at 1554.314 kb on - strand, within Psest_1443at 1554.314 kb on - strand, within Psest_1443

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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1,551,894 + Psest_1441 0.28 +1.6
1,551,894 + Psest_1441 0.28 -0.1
1,551,894 + Psest_1441 0.28 +1.1
1,551,894 + Psest_1441 0.28 +1.9
1,552,104 + Psest_1441 0.44 +1.2
1,552,104 + Psest_1441 0.44 +2.5
1,552,104 + Psest_1441 0.44 -1.2
1,552,104 + Psest_1441 0.44 -1.0
1,552,105 - Psest_1441 0.44 -0.7
1,552,105 - Psest_1441 0.44 -0.9
1,552,105 - Psest_1441 0.44 +0.8
1,552,105 - Psest_1441 0.44 -0.9
1,552,125 + Psest_1441 0.46 +0.5
1,552,125 + Psest_1441 0.46 +1.0
1,552,125 + Psest_1441 0.46 -0.4
1,552,125 + Psest_1441 0.46 +2.0
1,552,125 + Psest_1441 0.46 +1.2
1,552,125 + Psest_1441 0.46 +1.7
1,552,125 + Psest_1441 0.46 +0.6
1,552,125 + Psest_1441 0.46 -1.1
1,552,125 + Psest_1441 0.46 +0.1
1,552,125 + Psest_1441 0.46 -0.9
1,552,126 - Psest_1441 0.46 +0.4
1,552,126 - Psest_1441 0.46 -0.2
1,552,126 - Psest_1441 0.46 -0.6
1,552,126 - Psest_1441 0.46 +0.8
1,552,126 - Psest_1441 0.46 +1.2
1,552,344 + Psest_1441 0.63 +0.3
1,552,371 + Psest_1441 0.65 -0.1
1,552,371 + Psest_1441 0.65 +0.6
1,552,371 + Psest_1441 0.65 -0.6
1,552,372 - Psest_1441 0.65 -0.2
1,552,372 - Psest_1441 0.65 -0.3
1,552,482 + Psest_1441 0.74 -2.2
1,552,482 + Psest_1441 0.74 +0.1
1,552,482 + Psest_1441 0.74 +2.5
1,552,482 + Psest_1441 0.74 -2.2
1,552,482 + Psest_1441 0.74 +0.4
1,552,482 + Psest_1441 0.74 +0.8
1,552,482 + Psest_1441 0.74 +0.6
1,552,482 + Psest_1441 0.74 +0.5
1,552,483 - Psest_1441 0.74 -1.1
1,552,483 - Psest_1441 0.74 -0.2
1,552,483 - Psest_1441 0.74 -1.6
1,552,499 + Psest_1441 0.75 +0.4
1,552,799 + +0.8
1,552,800 - +1.6
1,552,800 - -1.4
1,552,845 + -0.1
1,552,845 + +0.1
1,552,845 + -0.2
1,552,845 + -0.2
1,552,846 - +0.9
1,552,846 - +0.1
1,552,846 - -1.1
1,552,846 - -0.8
1,552,846 - -0.6
1,552,846 - -0.4
1,552,846 - -0.7
1,552,849 + +1.0
1,552,849 + -0.5
1,552,849 + +0.5
1,552,857 + -0.1
1,553,120 + Psest_1442 0.50 -0.8
1,553,120 + Psest_1442 0.50 +0.1
1,553,120 + Psest_1442 0.50 +0.8
1,553,120 + Psest_1442 0.50 +0.3
1,553,120 + Psest_1442 0.50 -0.1
1,553,120 + Psest_1442 0.50 +1.7
1,553,120 + Psest_1442 0.50 +0.0
1,553,120 + Psest_1442 0.50 -0.1
1,553,120 + Psest_1442 0.50 +0.2
1,553,120 + Psest_1442 0.50 +0.9
1,553,120 + Psest_1442 0.50 +1.0
1,553,120 + Psest_1442 0.50 -0.8
1,553,120 + Psest_1442 0.50 +0.2
1,553,120 + Psest_1442 0.50 +0.9
1,553,120 + Psest_1442 0.50 -1.2
1,553,120 + Psest_1442 0.50 -0.9
1,553,120 + Psest_1442 0.50 -0.5
1,553,120 + Psest_1442 0.50 -0.6
1,553,120 + Psest_1442 0.50 -1.0
1,553,120 + Psest_1442 0.50 -0.4
1,553,120 + Psest_1442 0.50 -0.0
1,553,120 + Psest_1442 0.50 +0.2
1,553,120 + Psest_1442 0.50 +1.6
1,553,120 + Psest_1442 0.50 +1.4
1,553,120 + Psest_1442 0.50 +0.5
1,553,120 + Psest_1442 0.50 -0.1
1,553,120 + Psest_1442 0.50 -0.9
1,553,120 + Psest_1442 0.50 -1.1
1,553,120 + Psest_1442 0.50 -0.1
1,553,120 + Psest_1442 0.50 -0.1
1,553,120 + Psest_1442 0.50 +1.7
1,553,120 + Psest_1442 0.50 +0.9
1,553,120 + Psest_1442 0.50 -0.0
1,553,120 + Psest_1442 0.50 +0.0
1,553,120 + Psest_1442 0.50 +0.2
1,553,120 + Psest_1442 0.50 -1.8
1,553,120 + Psest_1442 0.50 -0.4
1,553,120 + Psest_1442 0.50 +0.4
1,553,121 - Psest_1442 0.50 -0.2
1,553,121 - Psest_1442 0.50 +1.6
1,553,121 - Psest_1442 0.50 +2.2
1,553,121 - Psest_1442 0.50 -2.2
1,553,121 - Psest_1442 0.50 +3.6
1,553,121 - Psest_1442 0.50 -0.9
1,553,121 - Psest_1442 0.50 +1.3
1,553,121 - Psest_1442 0.50 +0.7
1,553,121 - Psest_1442 0.50 +0.6
1,553,121 - Psest_1442 0.50 +2.2
1,553,121 - Psest_1442 0.50 +0.2
1,553,121 - Psest_1442 0.50 -0.5
1,553,121 - Psest_1442 0.50 +1.1
1,553,121 - Psest_1442 0.50 +0.2
1,553,121 - Psest_1442 0.50 -0.9
1,553,121 - Psest_1442 0.50 -1.5
1,553,121 - Psest_1442 0.50 +0.9
1,553,121 - Psest_1442 0.50 -0.5
1,553,121 - Psest_1442 0.50 +1.8
1,553,121 - Psest_1442 0.50 +1.0
1,553,121 - Psest_1442 0.50 +0.4
1,553,121 - Psest_1442 0.50 +0.2
1,553,245 + Psest_1442 0.75 +0.6
1,553,245 + Psest_1442 0.75 +0.9
1,553,245 + Psest_1442 0.75 +0.6
1,553,246 - Psest_1442 0.76 -0.4
1,553,246 - Psest_1442 0.76 +0.1
1,553,246 - Psest_1442 0.76 +0.6
1,553,297 + Psest_1442 0.86 +0.2
1,553,319 + -0.3
1,553,342 + +0.6
1,553,342 + +0.6
1,553,343 - -1.1
1,553,343 - +0.2
1,553,343 - -0.6
1,553,383 + +0.6
1,553,401 + +1.1
1,553,401 + +0.0
1,553,401 + +0.2
1,553,401 + -0.8
1,553,401 + -0.0
1,553,401 + -1.5
1,553,401 + +4.2
1,553,401 + +0.6
1,553,401 + -1.2
1,553,401 + +0.9
1,553,402 - -1.4
1,553,402 - +0.3
1,553,402 - -0.2
1,553,402 - -1.7
1,553,402 - +1.6
1,553,402 - -0.4
1,553,402 - -1.2
1,553,402 - +0.1
1,553,402 - -0.3
1,553,618 - +0.0
1,553,618 - +0.9
1,553,618 - -0.6
1,553,803 + Psest_1443 0.25 -0.8
1,553,803 + Psest_1443 0.25 +0.7
1,553,804 - Psest_1443 0.25 +2.5
1,553,804 - Psest_1443 0.25 +1.2
1,553,826 - Psest_1443 0.27 +0.3
1,553,920 + Psest_1443 0.39 +0.1
1,553,921 - Psest_1443 0.39 +1.9
1,554,053 + Psest_1443 0.55 +0.0
1,554,232 + Psest_1443 0.76 +1.1
1,554,313 + Psest_1443 0.86 -0.0
1,554,313 + Psest_1443 0.86 -1.8
1,554,313 + Psest_1443 0.86 +0.3
1,554,314 - Psest_1443 0.86 -0.1
1,554,314 - Psest_1443 0.86 +0.0
1,554,314 - Psest_1443 0.86 +0.5
1,554,314 - Psest_1443 0.86 -0.2

Or see this region's nucleotide sequence