Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1423

Experiment: nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 250 mM
1,530,636	+		Psest_1422	0.37	+0.4
1,530,636	+		Psest_1422	0.37	+0.3
1,530,636	+		Psest_1422	0.37	-0.6
1,530,636	+		Psest_1422	0.37	-1.1
1,530,637	-		Psest_1422	0.37	+0.6
1,530,637	-		Psest_1422	0.37	-1.3
1,530,637	-		Psest_1422	0.37	+0.7
1,530,811	-		Psest_1422	0.51	-0.5
1,530,811	-		Psest_1422	0.51	-1.4
1,530,904	+		Psest_1422	0.58	-0.1
1,530,904	+		Psest_1422	0.58	+2.2
1,530,906	+		Psest_1422	0.58	+1.4
1,530,906	+		Psest_1422	0.58	-0.6
1,530,907	-		Psest_1422	0.59	+1.4
1,530,907	-		Psest_1422	0.59	-0.1
1,531,029	+		Psest_1422	0.68	+0.5
1,531,030	-		Psest_1422	0.68	+1.3
1,531,032	+		Psest_1422	0.68	-0.6
1,531,032	+		Psest_1422	0.68	+0.6
1,531,032	+		Psest_1422	0.68	+1.2
1,531,033	-		Psest_1422	0.68	-0.1
1,531,033	-		Psest_1422	0.68	-0.9
1,531,033	-		Psest_1422	0.68	-0.4
1,531,033	-		Psest_1422	0.68	-0.7
1,531,033	-		Psest_1422	0.68	-1.4
1,531,033	-		Psest_1422	0.68	-1.3
1,531,033	-		Psest_1422	0.68	-0.5
1,531,221	+		Psest_1422	0.83	+1.0
1,531,222	-		Psest_1422	0.83	-1.3
1,531,222	-		Psest_1422	0.83	-1.1
1,531,275	+		Psest_1422	0.88	+0.7
1,531,275	+		Psest_1422	0.88	-0.4
1,531,275	+		Psest_1422	0.88	+3.2
1,531,275	+		Psest_1422	0.88	+0.7
1,531,275	+		Psest_1422	0.88	+0.1
1,531,276	-		Psest_1422	0.88	+0.2
1,531,276	-		Psest_1422	0.88	-0.3
1,531,276	-		Psest_1422	0.88	-0.6
1,531,292	+		Psest_1422	0.89	-0.2
1,531,293	-		Psest_1422	0.89	-0.9
1,531,452	+				-0.3
1,531,452	+				-0.7
1,531,453	-				+0.1
1,531,453	-				-1.1
1,531,544	+				-2.0
1,531,545	-				-0.1
1,531,545	-				-0.6
1,531,548	+				-0.2
1,531,548	+				-1.6
1,531,549	-				-0.4
1,531,549	-				-0.1
1,531,549	-				+1.0
1,531,549	-				+0.5
1,531,549	-				+1.2
1,531,571	+				+0.9
1,531,597	+				-0.7
1,531,598	-				-0.2
1,531,940	+		Psest_1423	0.16	+1.2
1,531,993	+		Psest_1423	0.19	+0.1
1,531,994	-		Psest_1423	0.19	+0.4
1,531,994	-		Psest_1423	0.19	+0.2
1,532,104	+		Psest_1423	0.24	-2.2
1,532,104	+		Psest_1423	0.24	-0.4
1,532,105	-		Psest_1423	0.24	-1.0
1,532,105	-		Psest_1423	0.24	-0.4
1,532,105	-		Psest_1423	0.24	+1.2
1,532,105	-		Psest_1423	0.24	+0.2
1,532,105	-		Psest_1423	0.24	-0.1
1,532,105	-		Psest_1423	0.24	-0.1
1,532,105	-		Psest_1423	0.24	-0.6
1,532,105	-		Psest_1423	0.24	+0.9
1,532,105	-		Psest_1423	0.24	-0.8
1,532,105	-		Psest_1423	0.24	-0.7
1,532,105	-		Psest_1423	0.24	-0.9
1,532,105	-		Psest_1423	0.24	-1.5
1,532,105	-		Psest_1423	0.24	-1.9
1,532,110	-		Psest_1423	0.24	-0.2
1,532,143	+		Psest_1423	0.26	-1.8
1,532,176	+		Psest_1423	0.27	-0.6
1,532,176	+		Psest_1423	0.27	+0.5
1,532,177	-		Psest_1423	0.27	-0.6
1,532,177	-		Psest_1423	0.27	+0.1
1,532,366	-		Psest_1423	0.36	+1.0
1,532,474	+				+2.2
1,532,475	-		Psest_1423	0.41	-0.2
1,532,476	+		Psest_1423	0.41	-0.8
1,532,476	+		Psest_1423	0.41	+0.6
1,532,476	+		Psest_1423	0.41	+1.2
1,532,476	+		Psest_1423	0.41	+0.2
1,532,476	+		Psest_1423	0.41	+0.2
1,532,476	+		Psest_1423	0.41	-0.4
1,532,477	-		Psest_1423	0.41	+0.2
1,532,477	-		Psest_1423	0.41	-1.1
1,532,477	-		Psest_1423	0.41	+0.4
1,532,477	-		Psest_1423	0.41	-1.4
1,532,477	-		Psest_1423	0.41	+0.2
1,532,477	-		Psest_1423	0.41	-0.4
1,532,477	-		Psest_1423	0.41	-0.3
1,532,518	+		Psest_1423	0.43	+0.2
1,532,518	+		Psest_1423	0.43	-0.9
1,532,519	-		Psest_1423	0.43	-1.1
1,532,519	-		Psest_1423	0.43	-0.4
1,532,522	+		Psest_1423	0.43	-0.6
1,532,522	+		Psest_1423	0.43	+2.2
1,532,522	+		Psest_1423	0.43	-1.9
1,532,523	-		Psest_1423	0.43	-0.1
1,532,523	-		Psest_1423	0.43	-0.4
1,532,523	-		Psest_1423	0.43	-1.1
1,532,523	-		Psest_1423	0.43	-1.8
1,532,523	-		Psest_1423	0.43	+0.1
1,532,523	-		Psest_1423	0.43	-0.7
1,532,565	-		Psest_1423	0.45	+0.2
1,532,565	-		Psest_1423	0.45	-0.4
1,532,588	-		Psest_1423	0.47	-0.1
1,532,659	+		Psest_1423	0.50	+0.5
1,532,752	+		Psest_1423	0.54	-1.1
1,532,752	+		Psest_1423	0.54	+0.2
1,532,752	+		Psest_1423	0.54	-0.8
1,532,795	-		Psest_1423	0.56	+0.5
1,532,814	+		Psest_1423	0.57	-1.5
1,532,814	+		Psest_1423	0.57	-1.6
1,532,814	+		Psest_1423	0.57	+1.2
1,532,815	-		Psest_1423	0.57	+0.6
1,532,815	-		Psest_1423	0.57	-2.5
1,532,815	-		Psest_1423	0.57	-1.1
1,532,874	-		Psest_1423	0.60	-0.6
1,532,874	-		Psest_1423	0.60	-0.6
1,532,917	+		Psest_1423	0.62	-1.7
1,532,918	-		Psest_1423	0.62	-1.9
1,532,918	-		Psest_1423	0.62	+1.6
1,533,052	+		Psest_1423	0.68	+0.2
1,533,052	+		Psest_1423	0.68	-0.9
1,533,052	+		Psest_1423	0.68	-0.1
1,533,052	+		Psest_1423	0.68	+1.8
1,533,052	+		Psest_1423	0.68	-2.9
1,533,052	+		Psest_1423	0.68	+0.2
1,533,053	-		Psest_1423	0.68	-0.4
1,533,096	+		Psest_1423	0.70	-0.6
1,533,096	+		Psest_1423	0.70	-2.7
1,533,134	+		Psest_1423	0.72	+1.3
1,533,138	+		Psest_1423	0.72	+0.1
1,533,138	+		Psest_1423	0.72	+0.6
1,533,139	-		Psest_1423	0.72	-0.1
1,533,144	+		Psest_1423	0.73	+0.9
1,533,144	+		Psest_1423	0.73	+1.7
1,533,144	+				+0.6
1,533,145	-		Psest_1423	0.73	-0.4
1,533,145	-		Psest_1423	0.73	+0.6
1,533,145	-		Psest_1423	0.73	+1.2
1,533,145	-		Psest_1423	0.73	-1.3
1,533,280	-		Psest_1423	0.79	+0.6
1,533,280	-		Psest_1423	0.79	-0.1
1,533,280	-		Psest_1423	0.79	-0.4
1,533,280	-		Psest_1423	0.79	+1.2
1,533,312	-		Psest_1423	0.80	-0.4
1,533,436	+		Psest_1423	0.86	-0.1
1,533,436	+		Psest_1423	0.86	-0.8
1,533,436	+		Psest_1423	0.86	+0.6
1,533,436	+		Psest_1423	0.86	+1.5
1,533,436	+		Psest_1423	0.86	+1.2
1,533,436	+		Psest_1423	0.86	-0.6
1,533,436	+		Psest_1423	0.86	+1.2
1,533,437	-		Psest_1423	0.86	-0.4
1,533,439	+		Psest_1423	0.86	-0.1
1,533,439	+		Psest_1423	0.86	+0.8
1,533,439	+		Psest_1423	0.86	-0.6
1,533,439	+		Psest_1423	0.86	+0.6
1,533,440	-		Psest_1423	0.86	-1.9
1,533,440	-		Psest_1423	0.86	-1.8
1,533,534	+				-0.1
1,533,534	+				-0.1
1,533,534	+				-0.8
1,533,534	+				+1.2
1,533,535	-				+3.8
1,533,602	+				-1.6
1,533,636	-				-1.6
1,533,732	+				+2.2
1,533,817	+				+1.2
1,533,817	+				+0.2
1,533,875	+				-1.0
1,533,875	+				+0.6
1,533,876	-				-0.4
1,533,876	-				+0.9
1,533,876	-				-0.1
1,533,900	-				-0.8
1,533,903	+				+1.6
1,533,912	-				-0.8
1,533,913	+				+0.6
1,534,000	+				+0.2
1,534,000	+				+1.2
1,534,000	+				+1.2
1,534,001	-				+0.6
1,534,001	-				-0.1
1,534,001	-				-2.2
1,534,010	+				+2.2
1,534,107	+				+0.2
1,534,210	+		Psest_1424	0.13	+2.2
1,534,211	-		Psest_1424	0.13	+2.2
1,534,315	+		Psest_1424	0.27	+3.2
1,534,315	+		Psest_1424	0.27	+3.2
1,534,315	+		Psest_1424	0.27	+0.2
1,534,315	+		Psest_1424	0.27	+0.2
1,534,315	+		Psest_1424	0.27	+0.6
1,534,620	-		Psest_1424	0.66	+1.2