Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1213

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1212 and Psest_1213 are separated by 137 nucleotidesPsest_1213 and Psest_1214 are separated by 202 nucleotides Psest_1212: Psest_1212 - Isopenicillin N synthase and related dioxygenases, at 1,317,418 to 1,318,392 _1212 Psest_1213: Psest_1213 - Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein, at 1,318,530 to 1,319,621 _1213 Psest_1214: Psest_1214 - Cytosine deaminase and related metal-dependent hydrolases, at 1,319,824 to 1,321,179 _1214 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1317.530 kb on + strand, within Psest_1212at 1317.531 kb on - strand, within Psest_1212at 1317.531 kb on - strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.689 kb on + strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.690 kb on - strand, within Psest_1212at 1317.767 kb on + strand, within Psest_1212at 1317.768 kb on - strand, within Psest_1212at 1317.789 kb on - strand, within Psest_1212at 1318.052 kb on - strand, within Psest_1212at 1318.074 kb on + strand, within Psest_1212at 1318.075 kb on - strand, within Psest_1212at 1318.280 kb on + strand, within Psest_1212at 1318.280 kb on + strand, within Psest_1212at 1318.281 kb on - strand, within Psest_1212at 1318.281 kb on - strand, within Psest_1212at 1318.281 kb on - strand, within Psest_1212at 1318.281 kb on - strand, within Psest_1212at 1318.355 kb on + strandat 1318.355 kb on + strandat 1318.355 kb on + strandat 1318.355 kb on + strandat 1318.355 kb on + strandat 1318.355 kb on + strandat 1318.355 kb on + strandat 1318.356 kb on - strandat 1318.356 kb on - strandat 1318.356 kb on - strandat 1318.356 kb on - strandat 1318.356 kb on - strandat 1318.531 kb on + strandat 1318.531 kb on + strandat 1318.531 kb on + strandat 1318.531 kb on + strandat 1318.564 kb on + strandat 1318.565 kb on - strandat 1318.565 kb on - strandat 1318.565 kb on - strandat 1318.565 kb on - strandat 1318.565 kb on - strandat 1318.567 kb on + strandat 1318.567 kb on + strandat 1318.567 kb on + strandat 1318.567 kb on + strandat 1318.567 kb on + strandat 1318.568 kb on - strandat 1318.568 kb on - strandat 1318.568 kb on - strandat 1318.568 kb on - strandat 1318.568 kb on - strandat 1318.826 kb on - strand, within Psest_1213at 1318.826 kb on - strand, within Psest_1213at 1318.910 kb on - strand, within Psest_1213at 1319.071 kb on + strand, within Psest_1213at 1319.071 kb on + strand, within Psest_1213at 1319.071 kb on + strand, within Psest_1213at 1319.072 kb on - strand, within Psest_1213at 1319.072 kb on - strand, within Psest_1213at 1319.072 kb on - strand, within Psest_1213at 1319.072 kb on - strand, within Psest_1213at 1319.072 kb on - strand, within Psest_1213at 1319.072 kb on - strand, within Psest_1213at 1319.204 kb on - strand, within Psest_1213at 1319.218 kb on + strand, within Psest_1213at 1319.219 kb on - strand, within Psest_1213at 1319.219 kb on - strand, within Psest_1213at 1319.219 kb on - strand, within Psest_1213at 1319.219 kb on - strand, within Psest_1213at 1319.219 kb on - strand, within Psest_1213at 1319.219 kb on - strand, within Psest_1213at 1319.311 kb on + strand, within Psest_1213at 1319.312 kb on - strand, within Psest_1213at 1319.312 kb on - strand, within Psest_1213at 1319.312 kb on - strand, within Psest_1213at 1319.342 kb on - strand, within Psest_1213at 1319.446 kb on + strand, within Psest_1213at 1319.446 kb on + strand, within Psest_1213at 1319.446 kb on + strand, within Psest_1213at 1319.446 kb on + strand, within Psest_1213at 1319.447 kb on - strand, within Psest_1213at 1319.447 kb on - strand, within Psest_1213at 1319.447 kb on - strand, within Psest_1213at 1319.447 kb on - strand, within Psest_1213at 1319.447 kb on - strand, within Psest_1213at 1319.447 kb on - strand, within Psest_1213at 1319.503 kb on + strand, within Psest_1213at 1319.503 kb on + strand, within Psest_1213at 1319.503 kb on + strand, within Psest_1213at 1319.503 kb on + strand, within Psest_1213at 1319.504 kb on - strand, within Psest_1213at 1319.504 kb on - strand, within Psest_1213at 1319.504 kb on - strand, within Psest_1213at 1319.645 kb on + strandat 1319.645 kb on + strandat 1319.646 kb on - strandat 1319.650 kb on - strandat 1319.650 kb on - strandat 1319.670 kb on + strandat 1319.670 kb on + strandat 1319.671 kb on - strandat 1319.671 kb on - strandat 1319.705 kb on + strandat 1319.706 kb on - strandat 1319.706 kb on - strandat 1319.706 kb on - strandat 1320.261 kb on + strand, within Psest_1214at 1320.261 kb on + strand, within Psest_1214at 1320.413 kb on + strand, within Psest_1214at 1320.413 kb on + strand, within Psest_1214at 1320.483 kb on + strand, within Psest_1214at 1320.484 kb on - strand, within Psest_1214at 1320.493 kb on + strand, within Psest_1214at 1320.493 kb on + strand, within Psest_1214at 1320.526 kb on - strand, within Psest_1214at 1320.526 kb on - strand, within Psest_1214at 1320.526 kb on - strand, within Psest_1214at 1320.526 kb on - strand, within Psest_1214at 1320.526 kb on - strand, within Psest_1214

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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1,317,530 + Psest_1212 0.11 +1.2
1,317,531 - Psest_1212 0.12 -0.4
1,317,531 - Psest_1212 0.12 +0.9
1,317,689 + Psest_1212 0.28 -0.8
1,317,689 + Psest_1212 0.28 +0.2
1,317,689 + Psest_1212 0.28 -0.4
1,317,689 + Psest_1212 0.28 +0.4
1,317,689 + Psest_1212 0.28 +2.2
1,317,689 + Psest_1212 0.28 +1.7
1,317,689 + Psest_1212 0.28 -0.4
1,317,689 + Psest_1212 0.28 +0.6
1,317,689 + Psest_1212 0.28 -0.4
1,317,689 + Psest_1212 0.28 +0.9
1,317,689 + Psest_1212 0.28 +0.6
1,317,689 + Psest_1212 0.28 +1.6
1,317,689 + Psest_1212 0.28 +0.3
1,317,689 + Psest_1212 0.28 +1.6
1,317,689 + Psest_1212 0.28 -0.6
1,317,689 + Psest_1212 0.28 +1.6
1,317,689 + Psest_1212 0.28 +1.2
1,317,689 + Psest_1212 0.28 +0.2
1,317,689 + Psest_1212 0.28 +0.6
1,317,690 - Psest_1212 0.28 +1.2
1,317,690 - Psest_1212 0.28 -0.4
1,317,690 - Psest_1212 0.28 +1.2
1,317,690 - Psest_1212 0.28 +0.2
1,317,690 - Psest_1212 0.28 +1.8
1,317,690 - Psest_1212 0.28 -0.2
1,317,690 - Psest_1212 0.28 +3.7
1,317,690 - Psest_1212 0.28 -1.5
1,317,690 - Psest_1212 0.28 -0.8
1,317,690 - Psest_1212 0.28 +1.2
1,317,690 - Psest_1212 0.28 +0.6
1,317,690 - Psest_1212 0.28 -1.2
1,317,690 - Psest_1212 0.28 -2.6
1,317,690 - Psest_1212 0.28 -0.4
1,317,690 - Psest_1212 0.28 -1.7
1,317,690 - Psest_1212 0.28 -1.2
1,317,690 - Psest_1212 0.28 +0.6
1,317,690 - Psest_1212 0.28 -1.6
1,317,690 - Psest_1212 0.28 -0.2
1,317,690 - Psest_1212 0.28 +2.2
1,317,690 - Psest_1212 0.28 -0.8
1,317,690 - Psest_1212 0.28 -0.4
1,317,690 - Psest_1212 0.28 -1.0
1,317,767 + Psest_1212 0.36 +2.2
1,317,768 - Psest_1212 0.36 +0.6
1,317,789 - Psest_1212 0.38 +3.2
1,318,052 - Psest_1212 0.65 -1.0
1,318,074 + Psest_1212 0.67 +0.6
1,318,075 - Psest_1212 0.67 +1.9
1,318,280 + Psest_1212 0.88 -0.6
1,318,280 + Psest_1212 0.88 -0.3
1,318,281 - Psest_1212 0.89 +0.8
1,318,281 - Psest_1212 0.89 -1.2
1,318,281 - Psest_1212 0.89 +0.8
1,318,281 - Psest_1212 0.89 +0.2
1,318,355 + +0.9
1,318,355 + +0.5
1,318,355 + +1.2
1,318,355 + -1.0
1,318,355 + +2.2
1,318,355 + -1.7
1,318,355 + -2.3
1,318,356 - -1.2
1,318,356 - +0.7
1,318,356 - -0.2
1,318,356 - -0.2
1,318,356 - +2.6
1,318,531 + -0.2
1,318,531 + +0.9
1,318,531 + +0.6
1,318,531 + +0.2
1,318,564 + -0.6
1,318,565 - +0.2
1,318,565 - +1.6
1,318,565 - +2.3
1,318,565 - -0.3
1,318,565 - +2.3
1,318,567 + -0.1
1,318,567 + +0.9
1,318,567 + +0.8
1,318,567 + -0.2
1,318,567 + -0.2
1,318,568 - +2.0
1,318,568 - +1.7
1,318,568 - +0.6
1,318,568 - -0.4
1,318,568 - +1.4
1,318,826 - Psest_1213 0.27 +2.6
1,318,826 - Psest_1213 0.27 +1.2
1,318,910 - Psest_1213 0.35 -0.2
1,319,071 + Psest_1213 0.50 -0.7
1,319,071 + Psest_1213 0.50 +0.2
1,319,071 + Psest_1213 0.50 +0.6
1,319,072 - Psest_1213 0.50 -0.0
1,319,072 - Psest_1213 0.50 -1.2
1,319,072 - Psest_1213 0.50 +0.6
1,319,072 - Psest_1213 0.50 +1.6
1,319,072 - Psest_1213 0.50 +0.3
1,319,072 - Psest_1213 0.50 -0.7
1,319,204 - Psest_1213 0.62 -1.4
1,319,218 + Psest_1213 0.63 -0.6
1,319,219 - Psest_1213 0.63 -0.6
1,319,219 - Psest_1213 0.63 +0.6
1,319,219 - Psest_1213 0.63 +1.6
1,319,219 - Psest_1213 0.63 +0.6
1,319,219 - Psest_1213 0.63 +0.2
1,319,219 - Psest_1213 0.63 -1.2
1,319,311 + Psest_1213 0.72 +0.2
1,319,312 - Psest_1213 0.72 +1.4
1,319,312 - Psest_1213 0.72 -0.6
1,319,312 - Psest_1213 0.72 -0.4
1,319,342 - Psest_1213 0.74 -1.4
1,319,446 + Psest_1213 0.84 +1.2
1,319,446 + Psest_1213 0.84 -0.4
1,319,446 + Psest_1213 0.84 +0.6
1,319,446 + Psest_1213 0.84 +0.6
1,319,447 - Psest_1213 0.84 +0.6
1,319,447 - Psest_1213 0.84 +0.2
1,319,447 - Psest_1213 0.84 +0.2
1,319,447 - Psest_1213 0.84 -0.6
1,319,447 - Psest_1213 0.84 +0.6
1,319,447 - Psest_1213 0.84 -1.3
1,319,503 + Psest_1213 0.89 +0.9
1,319,503 + Psest_1213 0.89 -0.3
1,319,503 + Psest_1213 0.89 +1.6
1,319,503 + Psest_1213 0.89 -0.6
1,319,504 - Psest_1213 0.89 +0.6
1,319,504 - Psest_1213 0.89 -2.2
1,319,504 - Psest_1213 0.89 -0.4
1,319,645 + +1.2
1,319,645 + -1.3
1,319,646 - +0.9
1,319,650 - -1.4
1,319,650 - +0.6
1,319,670 + +1.2
1,319,670 + +2.2
1,319,671 - +1.5
1,319,671 - +0.6
1,319,705 + +2.4
1,319,706 - -0.0
1,319,706 - +0.7
1,319,706 - -2.1
1,320,261 + Psest_1214 0.32 -0.4
1,320,261 + Psest_1214 0.32 +0.7
1,320,413 + Psest_1214 0.43 +0.2
1,320,413 + Psest_1214 0.43 +0.4
1,320,483 + Psest_1214 0.49 +0.3
1,320,484 - Psest_1214 0.49 +3.2
1,320,493 + Psest_1214 0.49 +0.2
1,320,493 + Psest_1214 0.49 +1.4
1,320,526 - Psest_1214 0.52 +3.2
1,320,526 - Psest_1214 0.52 +2.2
1,320,526 - Psest_1214 0.52 +1.2
1,320,526 - Psest_1214 0.52 -0.3
1,320,526 - Psest_1214 0.52 +0.8

Or see this region's nucleotide sequence