Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1113

Experiment: nitrate 250 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1112 and Psest_1113 overlap by 4 nucleotidesPsest_1113 and Psest_1114 are separated by 42 nucleotidesPsest_1114 and Psest_1115 are separated by 21 nucleotides Psest_1112: Psest_1112 - glutamyl-tRNA reductase, at 1,206,550 to 1,207,818 _1112 Psest_1113: Psest_1113 - peptide chain release factor 1, at 1,207,815 to 1,208,897 _1113 Psest_1114: Psest_1114 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 1,208,940 to 1,209,767 _1114 Psest_1115: Psest_1115 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2, at 1,209,789 to 1,210,538 _1115 Position (kb) 1207 1208 1209Strain fitness (log2 ratio) -1 0 1at 1208.902 kb on + strandat 1208.902 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
remove
1,208,902 + -0.6
1,208,902 + +0.2

Or see this region's nucleotide sequence