Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1100

Experiment: nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 250 mM
1,192,845	+		Psest_1099	0.43	-1.2
1,192,863	+		Psest_1099	0.44	-0.7
1,192,863	+		Psest_1099	0.44	-0.5
1,192,864	-		Psest_1099	0.44	+0.7
1,192,888	-		Psest_1099	0.46	-3.1
1,192,958	+		Psest_1099	0.50	-1.5
1,192,958	+		Psest_1099	0.50	-0.8
1,192,958	+		Psest_1099	0.50	-0.4
1,192,958	+		Psest_1099	0.50	-0.7
1,192,958	+		Psest_1099	0.50	+0.7
1,192,959	-		Psest_1099	0.50	-1.9
1,192,959	-		Psest_1099	0.50	-3.1
1,192,959	-		Psest_1099	0.50	-2.4
1,192,971	+		Psest_1099	0.51	+0.8
1,193,100	+		Psest_1099	0.59	-1.1
1,193,100	+		Psest_1099	0.59	-1.6
1,193,100	+		Psest_1099	0.59	-1.3
1,193,100	+		Psest_1099	0.59	-1.5
1,193,101	-		Psest_1099	0.59	-3.6
1,193,101	-		Psest_1099	0.59	-1.2
1,193,107	-		Psest_1099	0.59	-1.0
1,193,162	+		Psest_1099	0.62	+0.0
1,193,162	+		Psest_1099	0.62	-0.8
1,193,163	-		Psest_1099	0.62	-2.4
1,193,519	+		Psest_1099	0.84	-0.1
1,193,519	+		Psest_1099	0.84	-1.2
1,193,519	+		Psest_1099	0.84	-0.0
1,193,520	-		Psest_1099	0.84	-1.5
1,193,607	+		Psest_1099	0.89	-1.0
1,193,607	+		Psest_1099	0.89	+0.0
1,193,607	+		Psest_1099	0.89	+0.5
1,193,607	+		Psest_1099	0.89	-0.9
1,193,607	+		Psest_1099	0.89	-2.9
1,193,607	+		Psest_1099	0.89	-2.1
1,193,607	+		Psest_1099	0.89	-1.3
1,193,607	+		Psest_1099	0.89	-2.2
1,193,607	+		Psest_1099	0.89	-2.7
1,193,607	+		Psest_1099	0.89	-3.1
1,193,608	-		Psest_1099	0.89	-2.4
1,193,608	-		Psest_1099	0.89	-1.2
1,193,608	-		Psest_1099	0.89	-0.8
1,193,608	-		Psest_1099	0.89	-3.3
1,193,682	+				-2.3
1,193,682	+				-0.8
1,193,682	+				-0.6
1,193,683	-				-3.4
1,193,801	+				-2.6
1,193,801	+				-1.5
1,193,801	+				-1.3
1,193,801	+				+0.2
1,193,801	+				+0.2
1,193,802	-				+1.5
1,193,805	+				-2.1
1,193,805	+				-2.0
1,193,806	-				+0.0
1,194,338	+		Psest_1100	0.19	-1.1
1,194,338	+		Psest_1100	0.19	-0.1
1,194,338	+		Psest_1100	0.19	-0.4
1,194,338	+		Psest_1100	0.19	-0.3
1,194,338	+		Psest_1100	0.19	-0.3
1,194,339	-		Psest_1100	0.19	-0.2
1,194,339	-		Psest_1100	0.19	-2.4
1,194,588	-		Psest_1100	0.28	-0.9
1,194,600	+		Psest_1100	0.28	-1.8
1,194,830	-		Psest_1100	0.37	-1.6
1,194,830	-		Psest_1100	0.37	+0.0
1,194,906	-		Psest_1100	0.39	-1.0
1,194,948	+		Psest_1100	0.41	-1.8
1,194,949	-		Psest_1100	0.41	-2.6
1,195,068	+		Psest_1100	0.45	-1.6
1,195,068	+		Psest_1100	0.45	-0.8
1,195,074	+		Psest_1100	0.45	-0.1
1,195,074	+		Psest_1100	0.45	-0.3
1,195,074	+		Psest_1100	0.45	-3.8
1,195,075	-		Psest_1100	0.45	-1.1
1,195,075	-		Psest_1100	0.45	-1.8
1,195,251	+		Psest_1100	0.52	-1.6
1,195,252	-		Psest_1100	0.52	-0.1
1,195,252	-		Psest_1100	0.52	+0.2
1,195,252	-		Psest_1100	0.52	-1.3
1,195,252	-		Psest_1100	0.52	-1.8
1,195,260	+		Psest_1100	0.52	-2.4
1,195,451	+		Psest_1100	0.59	-3.8
1,195,451	+		Psest_1100	0.59	-0.1
1,195,451	+		Psest_1100	0.59	-1.6
1,195,451	+		Psest_1100	0.59	+1.0
1,195,451	+		Psest_1100	0.59	-1.8
1,195,451	+		Psest_1100	0.59	+0.9
1,195,451	+		Psest_1100	0.59	-0.6
1,195,451	+		Psest_1100	0.59	+0.2
1,195,451	+		Psest_1100	0.59	-2.2
1,195,451	+		Psest_1100	0.59	-0.3
1,195,452	-		Psest_1100	0.59	-0.4
1,195,452	-		Psest_1100	0.59	+0.3
1,195,452	-		Psest_1100	0.59	+0.5
1,195,452	-		Psest_1100	0.59	-0.3
1,195,452	-		Psest_1100	0.59	+0.3
1,195,452	-		Psest_1100	0.59	+1.4
1,195,452	-		Psest_1100	0.59	-0.7
1,195,452	-		Psest_1100	0.59	-1.5
1,195,600	+		Psest_1100	0.64	-1.8
1,195,600	+		Psest_1100	0.64	-0.5
1,195,600	+		Psest_1100	0.64	+0.1
1,195,600	+		Psest_1100	0.64	-2.8
1,195,601	-		Psest_1100	0.64	-0.1
1,195,602	+		Psest_1100	0.64	+2.2
1,195,602	+		Psest_1100	0.64	-0.4
1,195,602	+		Psest_1100	0.64	-0.9
1,195,603	-		Psest_1100	0.64	+3.2
1,195,613	-		Psest_1100	0.65	+0.1
1,195,613	-		Psest_1100	0.65	-0.6
1,195,613	-		Psest_1100	0.65	+0.3
1,195,707	+		Psest_1100	0.68	-1.3
1,195,707	+		Psest_1100	0.68	-1.4
1,195,707	+		Psest_1100	0.68	+1.4
1,195,707	+		Psest_1100	0.68	-1.6
1,195,708	-		Psest_1100	0.68	-3.5
1,195,708	-		Psest_1100	0.68	+0.3
1,195,725	+		Psest_1100	0.69	-3.0
1,195,726	-		Psest_1100	0.69	-0.3
1,195,734	+		Psest_1100	0.69	-0.7
1,195,734	+		Psest_1100	0.69	-2.2
1,195,734	+		Psest_1100	0.69	-1.8
1,195,734	+		Psest_1100	0.69	-2.4
1,195,734	+		Psest_1100	0.69	+0.4
1,195,734	+		Psest_1100	0.69	-0.8
1,195,734	+		Psest_1100	0.69	-1.3
1,195,735	-		Psest_1100	0.69	-1.6
1,195,735	-		Psest_1100	0.69	+0.8
1,195,842	+		Psest_1100	0.73	-1.5
1,195,842	+		Psest_1100	0.73	+0.5
1,195,842	+		Psest_1100	0.73	-1.3
1,195,842	+		Psest_1100	0.73	-1.3
1,195,842	+		Psest_1100	0.73	-0.9
1,195,842	+		Psest_1100	0.73	-1.1
1,195,842	+		Psest_1100	0.73	-1.6
1,195,843	-		Psest_1100	0.73	-1.7
1,195,843	-		Psest_1100	0.73	-1.0
1,195,843	-		Psest_1100	0.73	+0.2
1,196,259	+		Psest_1100	0.88	-1.6
1,196,259	+		Psest_1100	0.88	-1.4
1,196,259	+		Psest_1100	0.88	-0.8
1,196,281	-		Psest_1100	0.88	-0.7
1,196,325	+				+0.2
1,196,325	+				-1.2
1,196,326	-				-1.1
1,196,326	-				-2.5
1,196,326	-				-1.5
1,196,331	+				-1.1
1,196,428	-				-1.9
1,196,428	-				-0.5
1,196,428	-				-1.3
1,196,596	+				-1.3
1,196,597	-				+1.4
1,196,606	+				+1.1
1,196,606	+				-0.8
1,196,606	+				-2.0
1,196,607	-				-1.8
1,196,642	+				-1.2
1,196,642	+				-1.6
1,196,642	+				-2.7
1,196,642	+				-2.0
1,196,642	+				-1.4
1,196,643	-				-1.2
1,196,643	-				-0.8
1,196,643	-				-3.6
1,196,643	-				+0.4
1,196,643	-				-0.1
1,196,643	-				-1.7
1,196,664	+				-0.8
1,196,682	+				-1.8
1,196,682	+				-1.5
1,196,962	+		Psest_1101	0.26	-1.7
1,196,963	-		Psest_1101	0.26	+0.6
1,197,031	+		Psest_1101	0.33	+1.0
1,197,032	-		Psest_1101	0.33	+0.6
1,197,034	+		Psest_1101	0.33	-1.6
1,197,076	+		Psest_1101	0.37	-1.2
1,197,076	+		Psest_1101	0.37	-2.3
1,197,077	-		Psest_1101	0.37	+0.1
1,197,114	+		Psest_1101	0.40	-0.3
1,197,168	+		Psest_1101	0.45	+0.2
1,197,168	+		Psest_1101	0.45	-1.3
1,197,169	-		Psest_1101	0.46	-0.1
1,197,169	-		Psest_1101	0.46	-1.2
1,197,238	+		Psest_1101	0.52	-1.2
1,197,379	+		Psest_1101	0.65	+0.1
1,197,380	-		Psest_1101	0.65	-0.1
1,197,460	-		Psest_1101	0.73	-1.0