Strain Fitness in Shewanella amazonensis SB2B around Sama_2584

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuS and Sama_2583 are separated by 95 nucleotidesSama_2583 and Sama_2584 overlap by 1 nucleotidesSama_2584 and Sama_2585 are separated by 1 nucleotidesSama_2585 and Sama_2586 are separated by 72 nucleotides Sama_2582: leuS - leucyl-tRNA synthetase (RefSeq), at 3,089,606 to 3,092,200 leuS Sama_2583: Sama_2583 - rare lipoprotein B (RefSeq), at 3,092,296 to 3,092,790 _2583 Sama_2584: Sama_2584 - DNA-directed DNA polymerase (RefSeq), at 3,092,790 to 3,093,818 _2584 Sama_2585: Sama_2585 - nicotinate-nucleotide adenylyltransferase (RefSeq), at 3,093,820 to 3,094,470 _2585 Sama_2586: Sama_2586 - iojap domain-containing protein (RefSeq), at 3,094,543 to 3,094,869 _2586 Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3092.205 kb on + strandat 3092.271 kb on + strandat 3093.819 kb on + strandat 3093.819 kb on + strandat 3093.819 kb on + strandat 3093.819 kb on + strandat 3093.819 kb on + strandat 3093.820 kb on - strandat 3093.825 kb on + strandat 3093.849 kb on + strandat 3094.499 kb on - strandat 3094.534 kb on + strandat 3094.578 kb on + strand, within Sama_2586at 3094.593 kb on + strand, within Sama_2586at 3094.593 kb on + strand, within Sama_2586at 3094.613 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.648 kb on + strand, within Sama_2586at 3094.737 kb on + strand, within Sama_2586at 3094.737 kb on + strand, within Sama_2586

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,092,205 + +1.9
3,092,271 + -0.4
3,093,819 + -1.6
3,093,819 + -0.5
3,093,819 + -2.1
3,093,819 + +1.0
3,093,819 + -1.7
3,093,820 - -0.7
3,093,825 + +0.2
3,093,849 + +0.4
3,094,499 - +4.0
3,094,534 + -0.0
3,094,578 + Sama_2586 0.11 -1.3
3,094,593 + Sama_2586 0.15 +0.2
3,094,593 + Sama_2586 0.15 -0.0
3,094,613 + Sama_2586 0.21 -0.0
3,094,648 + Sama_2586 0.32 -1.3
3,094,648 + Sama_2586 0.32 +0.2
3,094,648 + Sama_2586 0.32 -0.6
3,094,648 + Sama_2586 0.32 -0.3
3,094,648 + Sama_2586 0.32 -1.9
3,094,737 + Sama_2586 0.59 -1.9
3,094,737 + Sama_2586 0.59 -1.3

Or see this region's nucleotide sequence