Strain Fitness in Shewanella amazonensis SB2B around Sama_2330

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2329 and Sama_2330 overlap by 8 nucleotidesSama_2330 and Sama_2331 overlap by 8 nucleotidesSama_2331 and Sama_2332 overlap by 1 nucleotides Sama_2329: Sama_2329 - pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq), at 2,794,887 to 2,796,044 _2329 Sama_2330: Sama_2330 - hypothetical protein (RefSeq), at 2,796,037 to 2,797,044 _2330 Sama_2331: Sama_2331 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,797,037 to 2,798,035 _2331 Sama_2332: Sama_2332 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 2,798,035 to 2,799,201 _2332 Position (kb) 2796 2797 2798Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 2795.120 kb on + strand, within Sama_2329at 2795.121 kb on - strand, within Sama_2329at 2795.121 kb on - strand, within Sama_2329at 2795.210 kb on + strand, within Sama_2329at 2795.211 kb on - strand, within Sama_2329at 2795.211 kb on - strand, within Sama_2329at 2795.228 kb on - strand, within Sama_2329at 2795.228 kb on - strand, within Sama_2329at 2795.237 kb on + strand, within Sama_2329at 2795.237 kb on + strand, within Sama_2329at 2795.237 kb on + strand, within Sama_2329at 2795.348 kb on + strand, within Sama_2329at 2795.466 kb on + strand, within Sama_2329at 2795.467 kb on - strand, within Sama_2329at 2795.467 kb on - strand, within Sama_2329at 2795.469 kb on + strand, within Sama_2329at 2795.469 kb on + strand, within Sama_2329at 2795.469 kb on + strand, within Sama_2329at 2795.528 kb on + strand, within Sama_2329at 2795.555 kb on + strand, within Sama_2329at 2795.556 kb on - strand, within Sama_2329at 2795.620 kb on + strand, within Sama_2329at 2795.621 kb on - strand, within Sama_2329at 2795.661 kb on - strand, within Sama_2329at 2795.675 kb on + strand, within Sama_2329at 2795.675 kb on + strand, within Sama_2329at 2795.676 kb on - strand, within Sama_2329at 2795.676 kb on - strand, within Sama_2329at 2795.676 kb on - strand, within Sama_2329at 2795.678 kb on + strand, within Sama_2329at 2795.678 kb on + strand, within Sama_2329at 2795.679 kb on - strand, within Sama_2329at 2795.679 kb on - strand, within Sama_2329at 2795.716 kb on + strand, within Sama_2329at 2795.724 kb on + strand, within Sama_2329at 2795.724 kb on + strand, within Sama_2329at 2795.725 kb on - strand, within Sama_2329at 2795.768 kb on - strand, within Sama_2329at 2795.768 kb on - strand, within Sama_2329at 2795.808 kb on + strand, within Sama_2329at 2795.809 kb on - strand, within Sama_2329at 2795.809 kb on - strand, within Sama_2329at 2795.819 kb on + strand, within Sama_2329at 2795.819 kb on + strand, within Sama_2329at 2795.820 kb on - strand, within Sama_2329at 2795.820 kb on - strand, within Sama_2329at 2795.872 kb on + strand, within Sama_2329at 2795.900 kb on + strand, within Sama_2329at 2795.900 kb on + strand, within Sama_2329at 2795.900 kb on + strand, within Sama_2329at 2795.943 kb on + strandat 2795.943 kb on + strandat 2795.943 kb on + strandat 2795.944 kb on - strandat 2795.944 kb on - strandat 2795.944 kb on - strandat 2795.949 kb on + strandat 2795.949 kb on + strandat 2795.949 kb on + strandat 2795.950 kb on - strandat 2795.950 kb on - strandat 2796.062 kb on + strandat 2796.072 kb on + strandat 2796.077 kb on - strandat 2796.093 kb on + strandat 2796.094 kb on - strandat 2796.103 kb on + strandat 2796.132 kb on + strandat 2796.133 kb on - strandat 2796.194 kb on + strand, within Sama_2330at 2796.210 kb on - strand, within Sama_2330at 2796.221 kb on + strand, within Sama_2330at 2796.222 kb on - strand, within Sama_2330at 2796.242 kb on - strand, within Sama_2330at 2796.265 kb on - strand, within Sama_2330at 2796.330 kb on + strand, within Sama_2330at 2796.331 kb on - strand, within Sama_2330at 2796.334 kb on - strand, within Sama_2330at 2796.399 kb on + strand, within Sama_2330at 2796.400 kb on - strand, within Sama_2330at 2796.466 kb on + strand, within Sama_2330at 2796.559 kb on + strand, within Sama_2330at 2796.568 kb on - strand, within Sama_2330at 2796.675 kb on + strand, within Sama_2330at 2796.679 kb on + strand, within Sama_2330at 2796.704 kb on + strand, within Sama_2330at 2796.705 kb on - strand, within Sama_2330at 2796.732 kb on - strand, within Sama_2330at 2796.752 kb on + strand, within Sama_2330at 2796.772 kb on + strand, within Sama_2330at 2796.773 kb on - strand, within Sama_2330at 2796.773 kb on - strand, within Sama_2330at 2796.879 kb on + strand, within Sama_2330at 2796.885 kb on + strand, within Sama_2330at 2796.906 kb on - strand, within Sama_2330at 2797.017 kb on + strandat 2797.268 kb on + strand, within Sama_2331at 2797.280 kb on - strand, within Sama_2331at 2797.303 kb on + strand, within Sama_2331at 2797.426 kb on - strand, within Sama_2331at 2797.456 kb on - strand, within Sama_2331at 2797.456 kb on - strand, within Sama_2331at 2797.506 kb on + strand, within Sama_2331at 2797.536 kb on + strand, within Sama_2331at 2797.545 kb on + strand, within Sama_2331at 2797.545 kb on + strand, within Sama_2331at 2797.546 kb on - strand, within Sama_2331at 2797.584 kb on + strand, within Sama_2331at 2797.585 kb on - strand, within Sama_2331at 2797.590 kb on + strand, within Sama_2331at 2797.591 kb on - strand, within Sama_2331at 2797.630 kb on + strand, within Sama_2331at 2797.630 kb on + strand, within Sama_2331at 2797.630 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.668 kb on + strand, within Sama_2331at 2797.699 kb on + strand, within Sama_2331at 2797.699 kb on + strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.700 kb on - strand, within Sama_2331at 2797.717 kb on + strand, within Sama_2331at 2797.894 kb on + strand, within Sama_2331at 2797.894 kb on + strand, within Sama_2331at 2797.894 kb on + strand, within Sama_2331at 2797.895 kb on - strand, within Sama_2331at 2797.898 kb on + strand, within Sama_2331at 2797.898 kb on + strand, within Sama_2331at 2797.898 kb on + strand, within Sama_2331at 2797.899 kb on - strand, within Sama_2331at 2797.899 kb on - strand, within Sama_2331at 2797.899 kb on - strand, within Sama_2331at 2797.900 kb on + strand, within Sama_2331at 2797.900 kb on + strand, within Sama_2331at 2797.901 kb on - strand, within Sama_2331at 2797.930 kb on + strand, within Sama_2331at 2797.930 kb on + strand, within Sama_2331at 2797.986 kb on + strandat 2797.986 kb on + strandat 2798.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,795,120 + Sama_2329 0.20 +1.7
2,795,121 - Sama_2329 0.20 +2.0
2,795,121 - Sama_2329 0.20 +1.3
2,795,210 + Sama_2329 0.28 +2.4
2,795,211 - Sama_2329 0.28 +3.3
2,795,211 - Sama_2329 0.28 -0.4
2,795,228 - Sama_2329 0.29 +2.4
2,795,228 - Sama_2329 0.29 +2.6
2,795,237 + Sama_2329 0.30 +3.1
2,795,237 + Sama_2329 0.30 +1.4
2,795,237 + Sama_2329 0.30 +0.9
2,795,348 + Sama_2329 0.40 +1.6
2,795,466 + Sama_2329 0.50 +0.8
2,795,467 - Sama_2329 0.50 +2.3
2,795,467 - Sama_2329 0.50 +3.0
2,795,469 + Sama_2329 0.50 +1.8
2,795,469 + Sama_2329 0.50 +0.4
2,795,469 + Sama_2329 0.50 +2.0
2,795,528 + Sama_2329 0.55 +0.9
2,795,555 + Sama_2329 0.58 +2.7
2,795,556 - Sama_2329 0.58 +1.0
2,795,620 + Sama_2329 0.63 +3.0
2,795,621 - Sama_2329 0.63 +2.1
2,795,661 - Sama_2329 0.67 +1.7
2,795,675 + Sama_2329 0.68 +2.8
2,795,675 + Sama_2329 0.68 +1.7
2,795,676 - Sama_2329 0.68 +3.2
2,795,676 - Sama_2329 0.68 -0.0
2,795,676 - Sama_2329 0.68 +1.4
2,795,678 + Sama_2329 0.68 +1.5
2,795,678 + Sama_2329 0.68 +2.3
2,795,679 - Sama_2329 0.68 +2.1
2,795,679 - Sama_2329 0.68 +1.2
2,795,716 + Sama_2329 0.72 +5.3
2,795,724 + Sama_2329 0.72 -0.3
2,795,724 + Sama_2329 0.72 +0.9
2,795,725 - Sama_2329 0.72 +0.8
2,795,768 - Sama_2329 0.76 +1.7
2,795,768 - Sama_2329 0.76 +2.0
2,795,808 + Sama_2329 0.80 +1.3
2,795,809 - Sama_2329 0.80 +2.7
2,795,809 - Sama_2329 0.80 +3.8
2,795,819 + Sama_2329 0.80 +0.9
2,795,819 + Sama_2329 0.80 +3.4
2,795,820 - Sama_2329 0.81 +1.6
2,795,820 - Sama_2329 0.81 +3.0
2,795,872 + Sama_2329 0.85 +0.4
2,795,900 + Sama_2329 0.87 +3.7
2,795,900 + Sama_2329 0.87 +1.4
2,795,900 + Sama_2329 0.87 +0.3
2,795,943 + +1.4
2,795,943 + +2.8
2,795,943 + +0.8
2,795,944 - +2.8
2,795,944 - +1.3
2,795,944 - +3.2
2,795,949 + +1.9
2,795,949 + +3.0
2,795,949 + +2.7
2,795,950 - +3.3
2,795,950 - +2.7
2,796,062 + +0.2
2,796,072 + +1.2
2,796,077 - +2.8
2,796,093 + +1.3
2,796,094 - -1.0
2,796,103 + -0.1
2,796,132 + +1.4
2,796,133 - +1.2
2,796,194 + Sama_2330 0.16 +0.3
2,796,210 - Sama_2330 0.17 -0.2
2,796,221 + Sama_2330 0.18 +6.4
2,796,222 - Sama_2330 0.18 +2.5
2,796,242 - Sama_2330 0.20 +4.8
2,796,265 - Sama_2330 0.23 +6.1
2,796,330 + Sama_2330 0.29 +3.1
2,796,331 - Sama_2330 0.29 +3.6
2,796,334 - Sama_2330 0.29 -0.8
2,796,399 + Sama_2330 0.36 +3.2
2,796,400 - Sama_2330 0.36 +4.4
2,796,466 + Sama_2330 0.43 +0.5
2,796,559 + Sama_2330 0.52 +3.0
2,796,568 - Sama_2330 0.53 +2.7
2,796,675 + Sama_2330 0.63 -0.4
2,796,679 + Sama_2330 0.64 +0.8
2,796,704 + Sama_2330 0.66 +0.0
2,796,705 - Sama_2330 0.66 +1.9
2,796,732 - Sama_2330 0.69 +2.1
2,796,752 + Sama_2330 0.71 -0.1
2,796,772 + Sama_2330 0.73 +0.2
2,796,773 - Sama_2330 0.73 +0.4
2,796,773 - Sama_2330 0.73 +3.8
2,796,879 + Sama_2330 0.84 +2.2
2,796,885 + Sama_2330 0.84 +1.5
2,796,906 - Sama_2330 0.86 +3.0
2,797,017 + +1.9
2,797,268 + Sama_2331 0.23 +2.7
2,797,280 - Sama_2331 0.24 +3.2
2,797,303 + Sama_2331 0.27 +5.0
2,797,426 - Sama_2331 0.39 +5.2
2,797,456 - Sama_2331 0.42 +1.2
2,797,456 - Sama_2331 0.42 +0.4
2,797,506 + Sama_2331 0.47 +1.0
2,797,536 + Sama_2331 0.50 +1.5
2,797,545 + Sama_2331 0.51 +6.7
2,797,545 + Sama_2331 0.51 +3.6
2,797,546 - Sama_2331 0.51 +2.7
2,797,584 + Sama_2331 0.55 +2.8
2,797,585 - Sama_2331 0.55 +0.9
2,797,590 + Sama_2331 0.55 +1.4
2,797,591 - Sama_2331 0.55 +2.2
2,797,630 + Sama_2331 0.59 +2.6
2,797,630 + Sama_2331 0.59 +1.0
2,797,630 + Sama_2331 0.59 +6.2
2,797,668 + Sama_2331 0.63 +3.4
2,797,668 + Sama_2331 0.63 +2.2
2,797,668 + Sama_2331 0.63 +3.2
2,797,668 + Sama_2331 0.63 +4.6
2,797,699 + Sama_2331 0.66 +7.6
2,797,699 + Sama_2331 0.66 +2.7
2,797,700 - Sama_2331 0.66 +0.6
2,797,700 - Sama_2331 0.66 +2.7
2,797,700 - Sama_2331 0.66 +1.9
2,797,700 - Sama_2331 0.66 +5.7
2,797,717 + Sama_2331 0.68 +0.8
2,797,894 + Sama_2331 0.86 +3.2
2,797,894 + Sama_2331 0.86 +2.9
2,797,894 + Sama_2331 0.86 +0.8
2,797,895 - Sama_2331 0.86 +4.6
2,797,898 + Sama_2331 0.86 +3.7
2,797,898 + Sama_2331 0.86 +2.7
2,797,898 + Sama_2331 0.86 +1.6
2,797,899 - Sama_2331 0.86 +0.7
2,797,899 - Sama_2331 0.86 +1.7
2,797,899 - Sama_2331 0.86 +2.6
2,797,900 + Sama_2331 0.86 +2.7
2,797,900 + Sama_2331 0.86 +2.9
2,797,901 - Sama_2331 0.86 +2.4
2,797,930 + Sama_2331 0.89 +3.0
2,797,930 + Sama_2331 0.89 +5.8
2,797,986 + +2.6
2,797,986 + +1.1
2,798,034 - +1.2

Or see this region's nucleotide sequence