Strain Fitness in Shewanella amazonensis SB2B around Sama_0961

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnusA and infB are separated by 24 nucleotidesinfB and rbfA are separated by 53 nucleotidesrbfA and Sama_0963 overlap by 1 nucleotides Sama_0960: nusA - transcription elongation factor NusA (RefSeq), at 1,159,587 to 1,161,086 nusA Sama_0961: infB - translation initiation factor IF-2 (RefSeq), at 1,161,111 to 1,163,759 infB Sama_0962: rbfA - ribosome-binding factor A (RefSeq), at 1,163,813 to 1,164,226 rbfA Sama_0963: Sama_0963 - pseudouridylate synthase (RefSeq), at 1,164,226 to 1,165,173 _0963 Position (kb) 1161 1162 1163 1164Strain fitness (log2 ratio) -1 0 1 2 3 4at 1164.319 kb on - strandat 1164.328 kb on + strand, within Sama_0963at 1164.328 kb on + strand, within Sama_0963at 1164.328 kb on + strand, within Sama_0963at 1164.328 kb on + strand, within Sama_0963at 1164.328 kb on + strand, within Sama_0963at 1164.329 kb on - strand, within Sama_0963at 1164.329 kb on - strand, within Sama_0963at 1164.352 kb on - strand, within Sama_0963at 1164.352 kb on - strand, within Sama_0963at 1164.449 kb on - strand, within Sama_0963at 1164.457 kb on - strand, within Sama_0963at 1164.524 kb on + strand, within Sama_0963at 1164.524 kb on + strand, within Sama_0963at 1164.577 kb on - strand, within Sama_0963at 1164.609 kb on + strand, within Sama_0963at 1164.609 kb on + strand, within Sama_0963at 1164.609 kb on + strand, within Sama_0963at 1164.610 kb on - strand, within Sama_0963at 1164.610 kb on - strand, within Sama_0963at 1164.613 kb on + strand, within Sama_0963at 1164.613 kb on + strand, within Sama_0963at 1164.613 kb on + strand, within Sama_0963at 1164.631 kb on + strand, within Sama_0963at 1164.631 kb on + strand, within Sama_0963at 1164.631 kb on + strand, within Sama_0963at 1164.632 kb on - strand, within Sama_0963at 1164.632 kb on - strand, within Sama_0963at 1164.632 kb on - strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.633 kb on + strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.634 kb on - strand, within Sama_0963at 1164.637 kb on + strand, within Sama_0963at 1164.637 kb on + strand, within Sama_0963at 1164.637 kb on + strand, within Sama_0963at 1164.637 kb on + strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.638 kb on - strand, within Sama_0963at 1164.652 kb on - strand, within Sama_0963at 1164.696 kb on + strand, within Sama_0963at 1164.735 kb on + strand, within Sama_0963at 1164.753 kb on + strand, within Sama_0963at 1164.753 kb on + strand, within Sama_0963at 1164.753 kb on + strand, within Sama_0963at 1164.753 kb on + strand, within Sama_0963at 1164.754 kb on - strand, within Sama_0963at 1164.754 kb on - strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.757 kb on + strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963at 1164.758 kb on - strand, within Sama_0963

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
1,164,319 - +0.3
1,164,328 + Sama_0963 0.11 +1.5
1,164,328 + Sama_0963 0.11 +0.9
1,164,328 + Sama_0963 0.11 +1.2
1,164,328 + Sama_0963 0.11 -1.2
1,164,328 + Sama_0963 0.11 -0.8
1,164,329 - Sama_0963 0.11 -0.2
1,164,329 - Sama_0963 0.11 +0.4
1,164,352 - Sama_0963 0.13 +0.6
1,164,352 - Sama_0963 0.13 -0.4
1,164,449 - Sama_0963 0.24 +0.6
1,164,457 - Sama_0963 0.24 -1.3
1,164,524 + Sama_0963 0.31 +0.7
1,164,524 + Sama_0963 0.31 +0.9
1,164,577 - Sama_0963 0.37 +0.0
1,164,609 + Sama_0963 0.40 +0.6
1,164,609 + Sama_0963 0.40 +0.6
1,164,609 + Sama_0963 0.40 -0.6
1,164,610 - Sama_0963 0.41 +2.4
1,164,610 - Sama_0963 0.41 +1.4
1,164,613 + Sama_0963 0.41 -0.9
1,164,613 + Sama_0963 0.41 -1.2
1,164,613 + Sama_0963 0.41 +2.3
1,164,631 + Sama_0963 0.43 +1.2
1,164,631 + Sama_0963 0.43 +1.6
1,164,631 + Sama_0963 0.43 -1.6
1,164,632 - Sama_0963 0.43 -0.3
1,164,632 - Sama_0963 0.43 -0.3
1,164,632 - Sama_0963 0.43 +0.5
1,164,633 + Sama_0963 0.43 -0.1
1,164,633 + Sama_0963 0.43 +1.1
1,164,633 + Sama_0963 0.43 -1.5
1,164,633 + Sama_0963 0.43 +1.2
1,164,633 + Sama_0963 0.43 +2.9
1,164,633 + Sama_0963 0.43 -0.2
1,164,633 + Sama_0963 0.43 +0.5
1,164,633 + Sama_0963 0.43 +2.8
1,164,633 + Sama_0963 0.43 +2.3
1,164,633 + Sama_0963 0.43 +0.2
1,164,633 + Sama_0963 0.43 -0.3
1,164,633 + Sama_0963 0.43 -0.7
1,164,633 + Sama_0963 0.43 -0.4
1,164,633 + Sama_0963 0.43 -0.8
1,164,634 - Sama_0963 0.43 -0.2
1,164,634 - Sama_0963 0.43 +0.2
1,164,634 - Sama_0963 0.43 +0.7
1,164,634 - Sama_0963 0.43 -0.4
1,164,634 - Sama_0963 0.43 +0.1
1,164,634 - Sama_0963 0.43 -1.1
1,164,634 - Sama_0963 0.43 -0.1
1,164,634 - Sama_0963 0.43 +0.5
1,164,634 - Sama_0963 0.43 +0.5
1,164,637 + Sama_0963 0.43 -1.2
1,164,637 + Sama_0963 0.43 -0.9
1,164,637 + Sama_0963 0.43 -0.5
1,164,637 + Sama_0963 0.43 +0.5
1,164,638 - Sama_0963 0.43 +0.1
1,164,638 - Sama_0963 0.43 +1.1
1,164,638 - Sama_0963 0.43 +0.4
1,164,638 - Sama_0963 0.43 +0.3
1,164,638 - Sama_0963 0.43 +0.4
1,164,638 - Sama_0963 0.43 -1.0
1,164,638 - Sama_0963 0.43 +0.6
1,164,638 - Sama_0963 0.43 -0.6
1,164,638 - Sama_0963 0.43 -0.6
1,164,638 - Sama_0963 0.43 +0.4
1,164,652 - Sama_0963 0.45 +1.8
1,164,696 + Sama_0963 0.50 -0.4
1,164,735 + Sama_0963 0.54 -0.1
1,164,753 + Sama_0963 0.56 +1.6
1,164,753 + Sama_0963 0.56 +0.9
1,164,753 + Sama_0963 0.56 +1.2
1,164,753 + Sama_0963 0.56 +1.7
1,164,754 - Sama_0963 0.56 +1.4
1,164,754 - Sama_0963 0.56 -0.1
1,164,757 + Sama_0963 0.56 +1.7
1,164,757 + Sama_0963 0.56 +0.1
1,164,757 + Sama_0963 0.56 -0.0
1,164,757 + Sama_0963 0.56 +0.9
1,164,757 + Sama_0963 0.56 -1.2
1,164,757 + Sama_0963 0.56 +2.6
1,164,757 + Sama_0963 0.56 +0.2
1,164,757 + Sama_0963 0.56 +1.2
1,164,757 + Sama_0963 0.56 +1.0
1,164,757 + Sama_0963 0.56 +0.6
1,164,757 + Sama_0963 0.56 -1.1
1,164,757 + Sama_0963 0.56 +0.9
1,164,757 + Sama_0963 0.56 -0.2
1,164,757 + Sama_0963 0.56 -0.7
1,164,757 + Sama_0963 0.56 -1.1
1,164,757 + Sama_0963 0.56 +2.2
1,164,757 + Sama_0963 0.56 +2.1
1,164,757 + Sama_0963 0.56 -0.9
1,164,757 + Sama_0963 0.56 +0.7
1,164,757 + Sama_0963 0.56 +0.1
1,164,757 + Sama_0963 0.56 +1.4
1,164,757 + Sama_0963 0.56 +1.1
1,164,757 + Sama_0963 0.56 +1.2
1,164,757 + Sama_0963 0.56 +0.1
1,164,757 + Sama_0963 0.56 +1.0
1,164,757 + Sama_0963 0.56 +0.4
1,164,757 + Sama_0963 0.56 +0.9
1,164,757 + Sama_0963 0.56 +0.6
1,164,757 + Sama_0963 0.56 +0.7
1,164,757 + Sama_0963 0.56 +3.1
1,164,757 + Sama_0963 0.56 +0.9
1,164,757 + Sama_0963 0.56 +1.5
1,164,757 + Sama_0963 0.56 -0.8
1,164,757 + Sama_0963 0.56 +1.2
1,164,757 + Sama_0963 0.56 +1.5
1,164,757 + Sama_0963 0.56 +1.0
1,164,757 + Sama_0963 0.56 +0.1
1,164,757 + Sama_0963 0.56 -0.2
1,164,758 - Sama_0963 0.56 +0.5
1,164,758 - Sama_0963 0.56 +0.4
1,164,758 - Sama_0963 0.56 -0.9
1,164,758 - Sama_0963 0.56 +1.2
1,164,758 - Sama_0963 0.56 +0.5
1,164,758 - Sama_0963 0.56 +1.8
1,164,758 - Sama_0963 0.56 -0.6
1,164,758 - Sama_0963 0.56 +2.0
1,164,758 - Sama_0963 0.56 +0.1
1,164,758 - Sama_0963 0.56 +0.7
1,164,758 - Sama_0963 0.56 +0.1
1,164,758 - Sama_0963 0.56 +0.9
1,164,758 - Sama_0963 0.56 +0.3
1,164,758 - Sama_0963 0.56 +3.1
1,164,758 - Sama_0963 0.56 +4.0
1,164,758 - Sama_0963 0.56 -0.7
1,164,758 - Sama_0963 0.56 -0.9
1,164,758 - Sama_0963 0.56 +0.4
1,164,758 - Sama_0963 0.56 -0.8
1,164,758 - Sama_0963 0.56 +0.4
1,164,758 - Sama_0963 0.56 -1.7
1,164,758 - Sama_0963 0.56 +0.7
1,164,758 - Sama_0963 0.56 +0.1
1,164,758 - Sama_0963 0.56 +1.1
1,164,758 - Sama_0963 0.56 -0.8
1,164,758 - Sama_0963 0.56 -0.5
1,164,758 - Sama_0963 0.56 -0.3
1,164,758 - Sama_0963 0.56 -0.1
1,164,758 - Sama_0963 0.56 +0.4
1,164,758 - Sama_0963 0.56 +3.9
1,164,758 - Sama_0963 0.56 +1.2
1,164,758 - Sama_0963 0.56 +1.2
1,164,758 - Sama_0963 0.56 +1.6
1,164,758 - Sama_0963 0.56 -0.4

Or see this region's nucleotide sequence