Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3400

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,577,610	+				-1.3
3,577,712	-				+1.2
3,577,722	+				+0.7
3,577,722	+				-0.5
3,577,755	-				-0.9
3,577,781	+				-0.6
3,577,781	+				-0.2
3,577,781	+				-1.4
3,577,781	+				-0.6
3,577,781	+				-1.5
3,577,781	+				+0.0
3,577,781	+				-1.3
3,577,781	+				+0.0
3,577,781	+				-1.9
3,577,781	+				-1.0
3,577,781	+				-1.7
3,577,789	-				-0.5
3,577,789	-				+0.0
3,577,789	-				+0.9
3,577,789	-				+0.2
3,577,789	-				-1.4
3,577,789	-				-0.4
3,577,789	-				-1.7
3,577,789	-				-1.1
3,577,789	-				-1.5
3,577,789	-				+0.7
3,577,791	+				-0.6
3,577,791	+				+0.1
3,577,796	+				-0.3
3,577,799	-				+1.2
3,577,818	+				-0.0
3,577,831	-				+0.3
3,577,841	-				-1.9
3,577,848	-				-0.9
3,577,885	+		Dshi_3400	0.12	-0.6
3,577,899	-		Dshi_3400	0.14	-2.2
3,577,993	-		Dshi_3400	0.28	+0.5
3,578,006	-		Dshi_3400	0.30	-0.7
3,578,041	-		Dshi_3400	0.35	-1.5
3,578,070	+		Dshi_3400	0.39	-0.7
3,578,108	+		Dshi_3400	0.44	-0.8
3,578,116	-		Dshi_3400	0.45	-0.8
3,578,118	+		Dshi_3400	0.46	-0.2
3,578,118	+		Dshi_3400	0.46	-0.2
3,578,118	+		Dshi_3400	0.46	-0.4
3,578,118	+		Dshi_3400	0.46	+1.1
3,578,126	-		Dshi_3400	0.47	-1.2
3,578,126	-		Dshi_3400	0.47	-1.1
3,578,145	+		Dshi_3400	0.50	-1.1
3,578,180	+		Dshi_3400	0.55	-0.5
3,578,180	+		Dshi_3400	0.55	+0.2
3,578,180	+		Dshi_3400	0.55	-1.2
3,578,188	-		Dshi_3400	0.56	-0.4
3,578,188	-		Dshi_3400	0.56	-1.3
3,578,193	-		Dshi_3400	0.57	-0.6
3,578,193	-				-0.2
3,578,240	+		Dshi_3400	0.63	-1.2
3,578,248	-		Dshi_3400	0.64	+0.0
3,578,317	-		Dshi_3400	0.74	+0.7
3,578,321	+		Dshi_3400	0.75	-0.7
3,578,329	-		Dshi_3400	0.76	-1.6
3,578,329	-		Dshi_3400	0.76	-1.5
3,578,357	+		Dshi_3400	0.80	-0.7
3,578,380	-		Dshi_3400	0.83	-1.2
3,578,390	-		Dshi_3400	0.85	-0.2
3,578,415	+		Dshi_3400	0.88	-1.1
3,578,423	+		Dshi_3400	0.89	-0.3
3,578,447	+				+0.5
3,578,447	+				-1.6
3,578,462	+				-0.5
3,578,470	-				+1.5
3,578,478	-				+0.3
3,578,478	-				-0.8
3,578,478	-				-1.6
3,578,478	-				+0.4
3,578,487	-				-0.3
3,578,503	+				-0.3
3,578,506	+				+0.5
3,578,544	+				+0.1
3,578,550	-				+1.0
3,578,550	-				-0.6
3,578,552	+				+0.3
3,578,555	-				+0.6
3,578,555	-				-1.1
3,578,560	-				+0.0
3,578,561	+				-0.8
3,578,569	-				+0.1
3,578,569	-				-0.1
3,578,586	+				-1.0
3,578,594	-		Dshi_3401	0.10	-0.4
3,578,640	+		Dshi_3401	0.16	-1.3
3,578,643	+		Dshi_3401	0.16	+0.4
3,578,643	+		Dshi_3401	0.16	+1.3
3,578,651	-		Dshi_3401	0.17	-0.6
3,578,651	-		Dshi_3401	0.17	-0.9
3,578,663	+		Dshi_3401	0.19	-0.2
3,578,671	-		Dshi_3401	0.20	+1.1
3,578,671	-		Dshi_3401	0.20	+1.2
3,578,681	+		Dshi_3401	0.21	-0.9
3,578,684	-		Dshi_3401	0.21	-0.7
3,578,736	+		Dshi_3401	0.28	-1.0
3,578,744	-		Dshi_3401	0.29	+0.9
3,578,749	-		Dshi_3401	0.29	+1.0
3,578,751	+		Dshi_3401	0.30	+1.1
3,578,823	+		Dshi_3401	0.38	-1.3
3,578,824	-		Dshi_3401	0.38	+0.6
3,578,887	-		Dshi_3401	0.46	-0.7
3,578,946	+		Dshi_3401	0.53	-1.2
3,578,946	+		Dshi_3401	0.53	-2.2
3,578,954	-		Dshi_3401	0.54	-1.3
3,579,007	-		Dshi_3401	0.61	-0.6
3,579,024	+		Dshi_3401	0.63	-0.3
3,579,044	+		Dshi_3401	0.65	-0.9
3,579,049	+		Dshi_3401	0.66	-2.4
3,579,057	-		Dshi_3401	0.67	-0.2
3,579,064	+		Dshi_3401	0.68	+0.0
3,579,064	+		Dshi_3401	0.68	-1.7
3,579,064	+		Dshi_3401	0.68	-0.7
3,579,072	-		Dshi_3401	0.69	-0.3
3,579,072	-		Dshi_3401	0.69	-0.7
3,579,081	+		Dshi_3401	0.70	-1.0
3,579,089	+		Dshi_3401	0.71	+1.0
3,579,106	+		Dshi_3401	0.73	+0.9
3,579,120	+		Dshi_3401	0.75	-3.2
3,579,120	+		Dshi_3401	0.75	+1.4
3,579,120	+		Dshi_3401	0.75	-1.1
3,579,120	+		Dshi_3401	0.75	+0.2
3,579,120	+		Dshi_3401	0.75	-1.3
3,579,120	+		Dshi_3401	0.75	-0.6
3,579,120	+		Dshi_3401	0.75	-0.7
3,579,125	+		Dshi_3401	0.75	+0.2
3,579,127	-		Dshi_3401	0.76	-0.5
3,579,127	-		Dshi_3401	0.76	-3.1
3,579,128	-		Dshi_3401	0.76	+0.2
3,579,128	-		Dshi_3401	0.76	-1.0
3,579,128	-		Dshi_3401	0.76	-1.0
3,579,128	-		Dshi_3401	0.76	-2.5
3,579,128	-		Dshi_3401	0.76	-0.5
3,579,128	-		Dshi_3401	0.76	-1.6
3,579,128	-		Dshi_3401	0.76	+0.0
3,579,128	-		Dshi_3401	0.76	+1.4
3,579,133	+		Dshi_3401	0.76	+0.1
3,579,133	+		Dshi_3401	0.76	-2.2
3,579,144	+		Dshi_3401	0.78	-0.7
3,579,146	-		Dshi_3401	0.78	+0.3
3,579,152	-		Dshi_3401	0.79	-0.9
3,579,152	-		Dshi_3401	0.79	-0.9
3,579,154	+		Dshi_3401	0.79	+1.8
3,579,160	-		Dshi_3401	0.80	-0.5
3,579,162	-		Dshi_3401	0.80	+1.1
3,579,162	-		Dshi_3401	0.80	+0.8
3,579,162	-		Dshi_3401	0.80	+0.8
3,579,162	-		Dshi_3401	0.80	-1.6
3,579,162	-		Dshi_3401	0.80	+0.8
3,579,162	-		Dshi_3401	0.80	-0.3
3,579,167	-		Dshi_3401	0.81	-0.0
3,579,167	-		Dshi_3401	0.81	+0.3
3,579,167	-		Dshi_3401	0.81	-0.0
3,579,212	-		Dshi_3401	0.86	-0.7
3,579,222	+		Dshi_3401	0.87	+0.2
3,579,222	+		Dshi_3401	0.87	-0.4
3,579,222	+		Dshi_3401	0.87	+0.6
3,579,222	+		Dshi_3401	0.87	-0.2
3,579,222	+		Dshi_3401	0.87	-0.4
3,579,222	+		Dshi_3401	0.87	-0.5
3,579,222	+		Dshi_3401	0.87	-1.8
3,579,222	+		Dshi_3401	0.87	-0.4
3,579,222	+		Dshi_3401	0.87	-1.9
3,579,222	+		Dshi_3401	0.87	+1.0
3,579,222	+		Dshi_3401	0.87	+2.6
3,579,222	+		Dshi_3401	0.87	-3.1
3,579,222	+		Dshi_3401	0.87	-0.8
3,579,222	+		Dshi_3401	0.87	+0.2
3,579,222	+		Dshi_3401	0.87	-3.6
3,579,222	+		Dshi_3401	0.87	+0.2
3,579,222	+		Dshi_3401	0.87	-0.8
3,579,222	+		Dshi_3401	0.87	+0.1
3,579,222	+		Dshi_3401	0.87	-2.4
3,579,222	+		Dshi_3401	0.87	+1.6
3,579,222	+		Dshi_3401	0.87	-1.7
3,579,222	+		Dshi_3401	0.87	-1.3
3,579,222	+		Dshi_3401	0.87	+0.1
3,579,222	+		Dshi_3401	0.87	-0.0
3,579,222	+		Dshi_3401	0.87	+0.3
3,579,222	+		Dshi_3401	0.87	-0.0
3,579,222	+		Dshi_3401	0.87	-0.8
3,579,222	+		Dshi_3401	0.87	-1.4
3,579,222	+		Dshi_3401	0.87	+0.7
3,579,222	+		Dshi_3401	0.87	-0.2
3,579,222	+		Dshi_3401	0.87	-0.2
3,579,227	+		Dshi_3401	0.88	+0.2
3,579,227	-		Dshi_3401	0.88	+0.0
3,579,227	-		Dshi_3401	0.88	+0.7
3,579,227	-		Dshi_3401	0.88	-0.6
3,579,227	-		Dshi_3401	0.88	+0.3
3,579,229	+		Dshi_3401	0.88	+1.0
3,579,230	-		Dshi_3401	0.88	+1.2
3,579,230	-		Dshi_3401	0.88	-0.4
3,579,230	-		Dshi_3401	0.88	-0.1
3,579,230	-		Dshi_3401	0.88	+0.7
3,579,230	-		Dshi_3401	0.88	+1.1
3,579,230	-		Dshi_3401	0.88	-0.4
3,579,230	-		Dshi_3401	0.88	-0.8
3,579,230	-		Dshi_3401	0.88	-0.7
3,579,230	-		Dshi_3401	0.88	-0.8
3,579,230	-		Dshi_3401	0.88	-1.6
3,579,230	-		Dshi_3401	0.88	-0.6
3,579,230	-		Dshi_3401	0.88	-0.3
3,579,230	-		Dshi_3401	0.88	-2.3
3,579,230	-		Dshi_3401	0.88	-0.3
3,579,230	-		Dshi_3401	0.88	-0.2
3,579,230	-		Dshi_3401	0.88	-1.6
3,579,230	-		Dshi_3401	0.88	+0.0
3,579,230	-		Dshi_3401	0.88	-1.4
3,579,230	-		Dshi_3401	0.88	+0.5
3,579,230	-		Dshi_3401	0.88	-0.6
3,579,230	-		Dshi_3401	0.88	-0.4
3,579,230	-		Dshi_3401	0.88	-0.8
3,579,230	-		Dshi_3401	0.88	+1.1
3,579,230	-		Dshi_3401	0.88	-0.4
3,579,230	-		Dshi_3401	0.88	-0.7
3,579,230	-		Dshi_3401	0.88	-1.0
3,579,230	-		Dshi_3401	0.88	-1.1
3,579,230	-		Dshi_3401	0.88	-0.0
3,579,230	-		Dshi_3401	0.88	-0.1
3,579,230	-		Dshi_3401	0.88	-0.1
3,579,232	+		Dshi_3401	0.88	-1.4
3,579,235	-		Dshi_3401	0.89	-1.3
3,579,235	-		Dshi_3401	0.89	-0.7
3,579,237	+		Dshi_3401	0.89	+0.3
3,579,240	-		Dshi_3401	0.89	+0.5
3,579,240	-		Dshi_3401	0.89	+1.1
3,579,245	-				-0.3
3,579,247	+				-0.3
3,579,255	+				-1.0
3,579,262	-				+0.4
3,579,286	+				-1.1
3,579,292	+				-0.5
3,579,294	-				-1.8
3,579,299	-				+0.8
3,579,299	-				-0.1
3,579,305	-				-1.3
3,579,307	+				-0.0
3,579,330	+				+1.3
3,579,344	-				-0.2
3,579,358	-				-0.9
3,579,394	+				+1.4
3,579,394	+				+0.6
3,579,407	-				+1.2
3,579,412	-				+0.6
3,579,423	-				+0.4
3,579,447	+				-2.7
3,579,447	+				+0.3
3,579,447	+				-0.7
3,579,447	+				-0.6
3,579,447	+				+1.2
3,579,447	+				-0.1
3,579,447	+				+0.0
3,579,447	+				-0.5
3,579,447	+				-0.1
3,579,447	+				-1.4
3,579,447	+				+0.2
3,579,447	+				-0.5
3,579,447	+				+0.8
3,579,447	+				-2.1
3,579,447	+				-0.9
3,579,455	-				-0.2
3,579,455	-				-2.5
3,579,455	-				-1.2
3,579,455	-				-2.2
3,579,455	-				+0.3
3,579,455	-				-1.6
3,579,462	-				+0.0
3,579,464	-				-0.4