Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2678

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2676 and Dshi_2677 overlap by 4 nucleotidesDshi_2677 and Dshi_2678 are separated by 22 nucleotidesDshi_2678 and Dshi_2679 overlap by 4 nucleotides Dshi_2676: Dshi_2676 - histidine kinase (RefSeq), at 2,832,817 to 2,834,847 _2676 Dshi_2677: Dshi_2677 - lipolytic protein G-D-S-L family (RefSeq), at 2,834,844 to 2,835,545 _2677 Dshi_2678: Dshi_2678 - ABC transporter related (RefSeq), at 2,835,568 to 2,836,272 _2678 Dshi_2679: Dshi_2679 - protein of unknown function DUF214 (RefSeq), at 2,836,269 to 2,838,797 _2679 Position (kb) 2835 2836 2837Strain fitness (log2 ratio) -2 -1 0 1at 2834.651 kb on + strandat 2834.792 kb on + strandat 2834.802 kb on + strandat 2834.952 kb on + strand, within Dshi_2677at 2834.952 kb on + strand, within Dshi_2677at 2834.967 kb on - strand, within Dshi_2677at 2834.978 kb on - strand, within Dshi_2677at 2834.981 kb on - strand, within Dshi_2677at 2835.009 kb on - strand, within Dshi_2677at 2835.043 kb on - strand, within Dshi_2677at 2835.162 kb on - strand, within Dshi_2677at 2835.173 kb on - strand, within Dshi_2677at 2835.178 kb on - strand, within Dshi_2677at 2835.256 kb on - strand, within Dshi_2677at 2835.295 kb on + strand, within Dshi_2677at 2835.305 kb on + strand, within Dshi_2677at 2835.330 kb on + strand, within Dshi_2677at 2835.334 kb on - strand, within Dshi_2677at 2835.350 kb on + strand, within Dshi_2677at 2835.437 kb on + strand, within Dshi_2677at 2835.484 kb on - strandat 2835.575 kb on + strandat 2835.615 kb on + strandat 2835.628 kb on - strandat 2835.677 kb on + strand, within Dshi_2678at 2835.695 kb on - strand, within Dshi_2678at 2835.765 kb on - strand, within Dshi_2678at 2835.776 kb on + strand, within Dshi_2678at 2835.781 kb on + strand, within Dshi_2678at 2835.847 kb on - strand, within Dshi_2678at 2835.851 kb on - strand, within Dshi_2678at 2836.296 kb on + strandat 2836.353 kb on + strandat 2836.356 kb on - strandat 2836.409 kb on - strandat 2836.661 kb on + strand, within Dshi_2679at 2836.919 kb on + strand, within Dshi_2679at 2836.927 kb on - strand, within Dshi_2679at 2837.089 kb on + strand, within Dshi_2679at 2837.233 kb on + strand, within Dshi_2679at 2837.238 kb on + strand, within Dshi_2679at 2837.240 kb on - strand, within Dshi_2679

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,834,651 + -0.5
2,834,792 + -0.3
2,834,802 + -1.6
2,834,952 + Dshi_2677 0.15 +0.3
2,834,952 + Dshi_2677 0.15 -1.8
2,834,967 - Dshi_2677 0.18 -1.3
2,834,978 - Dshi_2677 0.19 -0.1
2,834,981 - Dshi_2677 0.20 -0.5
2,835,009 - Dshi_2677 0.24 +0.5
2,835,043 - Dshi_2677 0.28 -0.8
2,835,162 - Dshi_2677 0.45 -0.6
2,835,173 - Dshi_2677 0.47 -0.7
2,835,178 - Dshi_2677 0.48 +0.2
2,835,256 - Dshi_2677 0.59 -0.0
2,835,295 + Dshi_2677 0.64 +0.8
2,835,305 + Dshi_2677 0.66 +0.1
2,835,330 + Dshi_2677 0.69 +0.3
2,835,334 - Dshi_2677 0.70 -2.3
2,835,350 + Dshi_2677 0.72 -0.3
2,835,437 + Dshi_2677 0.84 -0.6
2,835,484 - +0.9
2,835,575 + -0.7
2,835,615 + -0.6
2,835,628 - -0.6
2,835,677 + Dshi_2678 0.15 +0.3
2,835,695 - Dshi_2678 0.18 +1.1
2,835,765 - Dshi_2678 0.28 +0.9
2,835,776 + Dshi_2678 0.30 -0.4
2,835,781 + Dshi_2678 0.30 -0.2
2,835,847 - Dshi_2678 0.40 +0.8
2,835,851 - Dshi_2678 0.40 -0.8
2,836,296 + -0.9
2,836,353 + -0.3
2,836,356 - +0.4
2,836,409 - -0.4
2,836,661 + Dshi_2679 0.16 +0.4
2,836,919 + Dshi_2679 0.26 +0.4
2,836,927 - Dshi_2679 0.26 -0.7
2,837,089 + Dshi_2679 0.32 -0.3
2,837,233 + Dshi_2679 0.38 +0.2
2,837,238 + Dshi_2679 0.38 -0.6
2,837,240 - Dshi_2679 0.38 -0.0

Or see this region's nucleotide sequence