Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1854 and Dshi_1855 overlap by 4 nucleotides Dshi_1855 and Dshi_1856 are separated by 44 nucleotides Dshi_1856 and Dshi_1857 are separated by 10 nucleotides Dshi_1857 and Dshi_1858 overlap by 8 nucleotides
Dshi_1854: Dshi_1854 - heme exporter protein CcmB (RefSeq), at 1,934,384 to 1,935,040
_1854
Dshi_1855: Dshi_1855 - heme exporter protein CcmA (RefSeq), at 1,935,037 to 1,935,654
_1855
Dshi_1856: Dshi_1856 - protein of unknown function DUF498 (RefSeq), at 1,935,699 to 1,936,058
_1856
Dshi_1857: Dshi_1857 - protein of unknown function DUF81 (RefSeq), at 1,936,069 to 1,936,821
_1857
Dshi_1858: Dshi_1858 - protein-export membrane protein SecF (RefSeq), at 1,936,814 to 1,937,776
_1858
Position (kb) 1935
1936
1937 Strain fitness (log2 ratio) -1
0
1 at 1935.706 kb on + strand at 1935.792 kb on - strand, within Dshi_1856 at 1936.003 kb on + strand, within Dshi_1856 at 1936.004 kb on + strand, within Dshi_1856 at 1936.011 kb on + strand, within Dshi_1856 at 1936.138 kb on - strand at 1936.332 kb on - strand, within Dshi_1857 at 1936.575 kb on - strand, within Dshi_1857
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,935,706 + -0.2 1,935,792 - Dshi_1856 0.26 -0.5 1,936,003 + Dshi_1856 0.84 +0.5 1,936,004 + Dshi_1856 0.85 +1.5 1,936,011 + Dshi_1856 0.87 +1.5 1,936,138 - +0.4 1,936,332 - Dshi_1857 0.35 +0.6 1,936,575 - Dshi_1857 0.67 +0.6
Or see this region's nucleotide sequence