Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1265 and Dshi_1266 overlap by 4 nucleotides Dshi_1266 and Dshi_1267 overlap by 4 nucleotides Dshi_1267 and Dshi_1268 are separated by 3 nucleotides
Dshi_1265: Dshi_1265 - Inositol 2-dehydrogenase (RefSeq), at 1,314,155 to 1,315,138
_1265
Dshi_1266: Dshi_1266 - ketose-bisphosphate aldolase (RefSeq), at 1,315,135 to 1,315,977
_1266
Dshi_1267: Dshi_1267 - hypothetical protein (RefSeq), at 1,315,974 to 1,316,834
_1267
Dshi_1268: Dshi_1268 - PfkB domain protein (RefSeq), at 1,316,838 to 1,317,839
_1268
Position (kb)
1315
1316
1317 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1315.014 kb on + strand, within Dshi_1265 at 1315.119 kb on - strand at 1315.242 kb on + strand, within Dshi_1266 at 1315.250 kb on - strand, within Dshi_1266 at 1315.274 kb on + strand, within Dshi_1266 at 1315.293 kb on + strand, within Dshi_1266 at 1315.421 kb on + strand, within Dshi_1266 at 1315.491 kb on - strand, within Dshi_1266 at 1315.625 kb on - strand, within Dshi_1266 at 1315.703 kb on + strand, within Dshi_1266 at 1315.915 kb on + strand at 1315.920 kb on + strand at 1315.928 kb on - strand at 1316.027 kb on - strand at 1316.074 kb on - strand, within Dshi_1267 at 1316.131 kb on - strand, within Dshi_1267 at 1316.216 kb on + strand, within Dshi_1267 at 1316.266 kb on - strand, within Dshi_1267 at 1316.277 kb on - strand, within Dshi_1267 at 1316.316 kb on - strand, within Dshi_1267 at 1316.325 kb on + strand, within Dshi_1267 at 1316.352 kb on - strand, within Dshi_1267 at 1316.372 kb on + strand, within Dshi_1267 at 1316.434 kb on + strand, within Dshi_1267 at 1316.473 kb on - strand, within Dshi_1267 at 1316.560 kb on - strand, within Dshi_1267 at 1316.590 kb on - strand, within Dshi_1267 at 1316.675 kb on + strand, within Dshi_1267 at 1316.706 kb on + strand, within Dshi_1267 at 1316.714 kb on - strand, within Dshi_1267 at 1316.822 kb on - strand at 1316.836 kb on + strand at 1316.934 kb on - strand at 1317.079 kb on + strand, within Dshi_1268 at 1317.157 kb on + strand, within Dshi_1268 at 1317.180 kb on + strand, within Dshi_1268 at 1317.365 kb on + strand, within Dshi_1268 at 1317.371 kb on + strand, within Dshi_1268 at 1317.371 kb on + strand, within Dshi_1268 at 1317.397 kb on - strand, within Dshi_1268 at 1317.402 kb on + strand, within Dshi_1268 at 1317.448 kb on + strand, within Dshi_1268 at 1317.503 kb on - strand, within Dshi_1268 at 1317.513 kb on - strand, within Dshi_1268 at 1317.736 kb on - strand, within Dshi_1268
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,315,014 + Dshi_1265 0.87 -0.1 1,315,119 - -2.5 1,315,242 + Dshi_1266 0.13 -0.3 1,315,250 - Dshi_1266 0.14 -0.1 1,315,274 + Dshi_1266 0.16 -0.1 1,315,293 + Dshi_1266 0.19 +1.3 1,315,421 + Dshi_1266 0.34 +0.4 1,315,491 - Dshi_1266 0.42 -0.5 1,315,625 - Dshi_1266 0.58 +0.1 1,315,703 + Dshi_1266 0.67 -1.2 1,315,915 + -1.1 1,315,920 + +0.2 1,315,928 - +1.2 1,316,027 - -0.2 1,316,074 - Dshi_1267 0.12 -3.1 1,316,131 - Dshi_1267 0.18 +0.7 1,316,216 + Dshi_1267 0.28 -1.3 1,316,266 - Dshi_1267 0.34 +0.3 1,316,277 - Dshi_1267 0.35 +0.8 1,316,316 - Dshi_1267 0.40 -0.2 1,316,325 + Dshi_1267 0.41 -0.9 1,316,352 - Dshi_1267 0.44 -0.1 1,316,372 + Dshi_1267 0.46 +0.6 1,316,434 + Dshi_1267 0.53 -0.3 1,316,473 - Dshi_1267 0.58 +0.6 1,316,560 - Dshi_1267 0.68 +0.3 1,316,590 - Dshi_1267 0.72 -0.4 1,316,675 + Dshi_1267 0.81 -0.5 1,316,706 + Dshi_1267 0.85 -0.3 1,316,714 - Dshi_1267 0.86 +0.5 1,316,822 - -0.7 1,316,836 + -0.5 1,316,934 - -0.8 1,317,079 + Dshi_1268 0.24 +0.4 1,317,157 + Dshi_1268 0.32 +0.1 1,317,180 + Dshi_1268 0.34 +0.5 1,317,365 + Dshi_1268 0.53 -1.8 1,317,371 + Dshi_1268 0.53 +0.3 1,317,371 + Dshi_1268 0.53 +1.1 1,317,397 - Dshi_1268 0.56 +0.0 1,317,402 + Dshi_1268 0.56 +0.2 1,317,448 + Dshi_1268 0.61 +0.1 1,317,503 - Dshi_1268 0.66 +0.8 1,317,513 - Dshi_1268 0.67 +0.5 1,317,736 - Dshi_1268 0.90 +1.2
Or see this region's nucleotide sequence