Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0481

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0480 and Dshi_0481 are separated by 51 nucleotidesDshi_0481 and Dshi_0482 are separated by 467 nucleotides Dshi_0480: Dshi_0480 - hypothetical protein (RefSeq), at 464,801 to 465,967 _0480 Dshi_0481: Dshi_0481 - hypothetical protein (RefSeq), at 466,019 to 466,831 _0481 Dshi_0482: Dshi_0482 - hypothetical protein (RefSeq), at 467,299 to 467,784 _0482 Position (kb) 466 467Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.024 kb on - strand, within Dshi_0480at 465.034 kb on + strand, within Dshi_0480at 465.042 kb on + strand, within Dshi_0480at 465.070 kb on - strand, within Dshi_0480at 465.082 kb on + strand, within Dshi_0480at 465.099 kb on - strand, within Dshi_0480at 465.100 kb on - strand, within Dshi_0480at 465.123 kb on - strand, within Dshi_0480at 465.194 kb on + strand, within Dshi_0480at 465.195 kb on + strand, within Dshi_0480at 465.217 kb on + strand, within Dshi_0480at 465.217 kb on + strand, within Dshi_0480at 465.253 kb on - strand, within Dshi_0480at 465.265 kb on + strand, within Dshi_0480at 465.272 kb on - strand, within Dshi_0480at 465.276 kb on + strand, within Dshi_0480at 465.341 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.416 kb on - strand, within Dshi_0480at 465.416 kb on - strand, within Dshi_0480at 465.484 kb on + strand, within Dshi_0480at 465.509 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.521 kb on - strand, within Dshi_0480at 465.524 kb on + strand, within Dshi_0480at 465.524 kb on + strand, within Dshi_0480at 465.527 kb on - strand, within Dshi_0480at 465.527 kb on - strand, within Dshi_0480at 465.536 kb on + strand, within Dshi_0480at 465.601 kb on + strand, within Dshi_0480at 465.623 kb on - strand, within Dshi_0480at 465.699 kb on + strand, within Dshi_0480at 465.716 kb on + strand, within Dshi_0480at 465.773 kb on + strand, within Dshi_0480at 465.833 kb on - strand, within Dshi_0480at 465.843 kb on - strand, within Dshi_0480at 465.856 kb on + strandat 465.856 kb on + strandat 465.857 kb on - strandat 465.861 kb on + strandat 465.861 kb on + strandat 465.861 kb on + strandat 465.862 kb on - strandat 465.864 kb on - strandat 465.869 kb on - strandat 465.869 kb on - strandat 465.875 kb on + strandat 465.880 kb on + strandat 465.882 kb on + strandat 465.900 kb on + strandat 465.910 kb on + strandat 465.943 kb on + strandat 465.951 kb on - strandat 465.983 kb on + strandat 465.983 kb on + strandat 466.010 kb on + strandat 466.012 kb on + strandat 466.020 kb on - strandat 466.077 kb on - strandat 466.090 kb on + strandat 466.090 kb on + strandat 466.098 kb on - strandat 466.098 kb on - strandat 466.237 kb on - strand, within Dshi_0481at 466.241 kb on + strand, within Dshi_0481at 466.241 kb on + strand, within Dshi_0481at 466.246 kb on - strand, within Dshi_0481at 466.246 kb on - strand, within Dshi_0481at 466.246 kb on - strand, within Dshi_0481at 466.261 kb on + strand, within Dshi_0481at 466.264 kb on - strand, within Dshi_0481at 466.297 kb on + strand, within Dshi_0481at 466.297 kb on + strand, within Dshi_0481at 466.331 kb on + strand, within Dshi_0481at 466.334 kb on - strand, within Dshi_0481at 466.351 kb on - strand, within Dshi_0481at 466.433 kb on - strand, within Dshi_0481at 466.486 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.637 kb on + strand, within Dshi_0481at 466.637 kb on + strand, within Dshi_0481at 466.674 kb on - strand, within Dshi_0481at 466.702 kb on + strand, within Dshi_0481at 466.702 kb on + strand, within Dshi_0481at 466.703 kb on - strand, within Dshi_0481at 466.710 kb on - strand, within Dshi_0481at 466.710 kb on - strand, within Dshi_0481at 466.731 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.751 kb on - strandat 466.751 kb on - strandat 466.751 kb on - strandat 466.751 kb on - strandat 466.763 kb on - strandat 466.763 kb on - strandat 466.786 kb on + strandat 466.799 kb on - strandat 466.799 kb on - strandat 466.819 kb on - strandat 466.854 kb on + strandat 466.856 kb on + strandat 466.864 kb on - strandat 466.891 kb on + strandat 466.894 kb on - strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.971 kb on - strandat 466.971 kb on - strandat 466.971 kb on - strandat 466.986 kb on + strandat 467.017 kb on + strandat 467.025 kb on - strandat 467.025 kb on - strandat 467.045 kb on + strandat 467.059 kb on + strandat 467.159 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.177 kb on - strandat 467.177 kb on - strandat 467.211 kb on - strandat 467.217 kb on - strandat 467.252 kb on + strandat 467.252 kb on + strandat 467.253 kb on + strandat 467.253 kb on + strandat 467.271 kb on + strandat 467.271 kb on + strandat 467.286 kb on + strandat 467.294 kb on - strandat 467.334 kb on - strandat 467.346 kb on + strandat 467.351 kb on + strand, within Dshi_0482at 467.354 kb on - strand, within Dshi_0482at 467.356 kb on + strand, within Dshi_0482at 467.356 kb on + strand, within Dshi_0482at 467.356 kb on + strand, within Dshi_0482at 467.361 kb on + strand, within Dshi_0482at 467.364 kb on - strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.403 kb on + strand, within Dshi_0482at 467.411 kb on - strand, within Dshi_0482at 467.411 kb on - strand, within Dshi_0482at 467.427 kb on + strand, within Dshi_0482at 467.427 kb on + strand, within Dshi_0482at 467.427 kb on + strand, within Dshi_0482at 467.435 kb on - strand, within Dshi_0482at 467.435 kb on - strand, within Dshi_0482at 467.435 kb on - strand, within Dshi_0482at 467.452 kb on + strand, within Dshi_0482at 467.453 kb on - strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.490 kb on - strand, within Dshi_0482at 467.495 kb on + strand, within Dshi_0482at 467.495 kb on + strand, within Dshi_0482at 467.500 kb on + strand, within Dshi_0482at 467.587 kb on - strand, within Dshi_0482at 467.589 kb on + strand, within Dshi_0482at 467.589 kb on + strand, within Dshi_0482at 467.597 kb on + strand, within Dshi_0482at 467.597 kb on - strand, within Dshi_0482at 467.597 kb on - strand, within Dshi_0482at 467.597 kb on - strand, within Dshi_0482at 467.603 kb on + strand, within Dshi_0482at 467.634 kb on - strand, within Dshi_0482at 467.636 kb on + strand, within Dshi_0482at 467.659 kb on - strand, within Dshi_0482at 467.661 kb on + strand, within Dshi_0482at 467.670 kb on - strand, within Dshi_0482at 467.704 kb on + strand, within Dshi_0482at 467.704 kb on + strand, within Dshi_0482at 467.709 kb on + strand, within Dshi_0482at 467.711 kb on - strand, within Dshi_0482at 467.711 kb on - strand, within Dshi_0482at 467.717 kb on - strand, within Dshi_0482at 467.723 kb on + strand, within Dshi_0482at 467.723 kb on + strand, within Dshi_0482at 467.750 kb on + strandat 467.758 kb on - strandat 467.758 kb on - strandat 467.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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465,024 - Dshi_0480 0.19 +2.0
465,034 + Dshi_0480 0.20 -0.2
465,042 + Dshi_0480 0.21 +0.5
465,070 - Dshi_0480 0.23 -0.5
465,082 + Dshi_0480 0.24 -0.6
465,099 - Dshi_0480 0.26 -1.5
465,100 - Dshi_0480 0.26 +0.2
465,123 - Dshi_0480 0.28 -1.4
465,194 + Dshi_0480 0.34 +0.4
465,195 + Dshi_0480 0.34 +0.2
465,217 + Dshi_0480 0.36 -0.7
465,217 + Dshi_0480 0.36 -1.2
465,253 - Dshi_0480 0.39 +0.9
465,265 + Dshi_0480 0.40 -1.7
465,272 - Dshi_0480 0.40 -2.5
465,276 + Dshi_0480 0.41 -0.5
465,341 + Dshi_0480 0.46 -0.0
465,376 + Dshi_0480 0.49 -0.2
465,376 + Dshi_0480 0.49 +0.1
465,376 + Dshi_0480 0.49 -1.5
465,416 - Dshi_0480 0.53 -1.1
465,416 - Dshi_0480 0.53 -0.5
465,484 + Dshi_0480 0.59 -1.8
465,509 + Dshi_0480 0.61 -0.2
465,519 + Dshi_0480 0.62 +0.3
465,519 + Dshi_0480 0.62 +0.1
465,519 + Dshi_0480 0.62 -1.2
465,519 + Dshi_0480 0.62 +0.3
465,521 - Dshi_0480 0.62 -0.0
465,524 + Dshi_0480 0.62 +0.2
465,524 + Dshi_0480 0.62 +0.0
465,527 - Dshi_0480 0.62 -0.2
465,527 - Dshi_0480 0.62 -1.3
465,536 + Dshi_0480 0.63 +0.0
465,601 + Dshi_0480 0.69 -0.1
465,623 - Dshi_0480 0.70 -0.8
465,699 + Dshi_0480 0.77 +0.3
465,716 + Dshi_0480 0.78 -2.2
465,773 + Dshi_0480 0.83 +0.4
465,833 - Dshi_0480 0.88 -0.7
465,843 - Dshi_0480 0.89 -1.6
465,856 + -2.1
465,856 + -0.6
465,857 - -0.3
465,861 + +1.5
465,861 + -1.2
465,861 + +1.9
465,862 - -1.7
465,864 - -3.1
465,869 - -0.4
465,869 - -1.4
465,875 + +0.0
465,880 + -0.9
465,882 + -2.0
465,900 + +0.1
465,910 + +0.0
465,943 + +0.6
465,951 - -0.5
465,983 + +1.6
465,983 + +0.6
466,010 + +2.6
466,012 + -0.9
466,020 - -0.7
466,077 - -1.1
466,090 + -2.0
466,090 + -1.9
466,098 - -0.1
466,098 - +0.6
466,237 - Dshi_0481 0.27 -0.6
466,241 + Dshi_0481 0.27 -0.5
466,241 + Dshi_0481 0.27 -0.9
466,246 - Dshi_0481 0.28 -0.4
466,246 - Dshi_0481 0.28 -0.4
466,246 - Dshi_0481 0.28 -0.9
466,261 + Dshi_0481 0.30 -1.6
466,264 - Dshi_0481 0.30 -1.3
466,297 + Dshi_0481 0.34 +0.7
466,297 + Dshi_0481 0.34 +0.4
466,331 + Dshi_0481 0.38 -0.3
466,334 - Dshi_0481 0.39 -0.3
466,351 - Dshi_0481 0.41 +0.9
466,433 - Dshi_0481 0.51 -1.5
466,486 - Dshi_0481 0.57 -0.1
466,583 - Dshi_0481 0.69 -1.1
466,583 - Dshi_0481 0.69 -2.7
466,583 - Dshi_0481 0.69 +0.6
466,637 + Dshi_0481 0.76 +0.4
466,637 + Dshi_0481 0.76 -0.0
466,674 - Dshi_0481 0.81 -0.4
466,702 + Dshi_0481 0.84 -0.6
466,702 + Dshi_0481 0.84 -2.3
466,703 - Dshi_0481 0.84 -0.9
466,710 - Dshi_0481 0.85 -0.0
466,710 - Dshi_0481 0.85 -0.9
466,731 + Dshi_0481 0.88 -0.4
466,743 + Dshi_0481 0.89 -3.1
466,743 + Dshi_0481 0.89 -0.5
466,743 + Dshi_0481 0.89 -0.3
466,743 + Dshi_0481 0.89 -0.3
466,743 + Dshi_0481 0.89 +0.4
466,743 + Dshi_0481 0.89 +0.3
466,743 + Dshi_0481 0.89 +0.3
466,743 + Dshi_0481 0.89 +0.2
466,743 + Dshi_0481 0.89 -0.5
466,743 + Dshi_0481 0.89 -2.1
466,751 - +0.4
466,751 - -1.6
466,751 - +0.8
466,751 - +0.6
466,763 - +0.7
466,763 - -1.0
466,786 + -0.4
466,799 - -3.0
466,799 - -0.5
466,819 - -0.1
466,854 + -0.2
466,856 + -0.6
466,864 - +1.0
466,891 + -1.0
466,894 - -0.9
466,963 + -0.3
466,963 + -0.1
466,963 + -2.7
466,963 + -0.4
466,971 - -0.4
466,971 - +0.0
466,971 - -3.1
466,986 + +0.1
467,017 + +0.1
467,025 - -0.8
467,025 - -0.9
467,045 + -1.4
467,059 + +0.7
467,159 + +0.2
467,169 + +0.2
467,169 + -2.0
467,169 + -0.9
467,169 + +0.3
467,169 + -1.3
467,177 - +0.8
467,177 - +0.7
467,211 - -0.5
467,217 - +0.3
467,252 + -1.0
467,252 + +0.8
467,253 + -2.1
467,253 + -0.1
467,271 + +2.0
467,271 + -1.6
467,286 + +0.3
467,294 - -0.6
467,334 - -1.5
467,346 + +0.4
467,351 + Dshi_0482 0.11 -0.8
467,354 - Dshi_0482 0.11 +0.1
467,356 + Dshi_0482 0.12 -0.6
467,356 + Dshi_0482 0.12 +0.1
467,356 + Dshi_0482 0.12 -0.6
467,361 + Dshi_0482 0.13 -0.0
467,364 - Dshi_0482 0.13 -0.5
467,393 + Dshi_0482 0.19 +1.3
467,393 + Dshi_0482 0.19 +0.2
467,393 + Dshi_0482 0.19 +0.2
467,393 + Dshi_0482 0.19 +0.3
467,393 + Dshi_0482 0.19 -0.0
467,401 - Dshi_0482 0.21 +0.5
467,401 - Dshi_0482 0.21 +0.4
467,401 - Dshi_0482 0.21 +1.4
467,401 - Dshi_0482 0.21 -0.2
467,401 - Dshi_0482 0.21 +0.2
467,401 - Dshi_0482 0.21 -1.2
467,403 + Dshi_0482 0.21 -0.9
467,411 - Dshi_0482 0.23 +0.1
467,411 - Dshi_0482 0.23 -0.2
467,427 + Dshi_0482 0.26 -0.2
467,427 + Dshi_0482 0.26 -1.8
467,427 + Dshi_0482 0.26 +2.5
467,435 - Dshi_0482 0.28 -0.3
467,435 - Dshi_0482 0.28 -0.9
467,435 - Dshi_0482 0.28 +0.0
467,452 + Dshi_0482 0.31 -0.6
467,453 - Dshi_0482 0.32 -0.9
467,482 + Dshi_0482 0.38 -0.7
467,482 + Dshi_0482 0.38 -0.7
467,482 + Dshi_0482 0.38 +0.5
467,482 + Dshi_0482 0.38 -0.6
467,490 - Dshi_0482 0.39 +0.6
467,495 + Dshi_0482 0.40 -2.3
467,495 + Dshi_0482 0.40 -1.3
467,500 + Dshi_0482 0.41 +0.0
467,587 - Dshi_0482 0.59 -0.2
467,589 + Dshi_0482 0.60 -0.5
467,589 + Dshi_0482 0.60 +0.4
467,597 + Dshi_0482 0.61 -0.5
467,597 - Dshi_0482 0.61 -1.4
467,597 - Dshi_0482 0.61 -0.3
467,597 - Dshi_0482 0.61 -0.5
467,603 + Dshi_0482 0.63 +0.0
467,634 - Dshi_0482 0.69 +0.2
467,636 + Dshi_0482 0.69 -2.5
467,659 - Dshi_0482 0.74 +1.2
467,661 + Dshi_0482 0.74 -1.5
467,670 - Dshi_0482 0.76 -1.3
467,704 + Dshi_0482 0.83 +0.8
467,704 + Dshi_0482 0.83 -0.6
467,709 + Dshi_0482 0.84 -1.6
467,711 - Dshi_0482 0.85 -0.3
467,711 - Dshi_0482 0.85 -1.2
467,717 - Dshi_0482 0.86 -0.3
467,723 + Dshi_0482 0.87 +0.0
467,723 + Dshi_0482 0.87 -0.8
467,750 + +0.4
467,758 - +0.2
467,758 - -2.0
467,820 - -0.5

Or see this region's nucleotide sequence