Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0384

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0382 and Dshi_0383 are separated by 124 nucleotidesDshi_0383 and Dshi_0384 are separated by 121 nucleotidesDshi_0384 and Dshi_0385 are separated by 57 nucleotides Dshi_0382: Dshi_0382 - phenylacetate-CoA ligase, putative (RefSeq), at 364,512 to 365,732 _0382 Dshi_0383: Dshi_0383 - hypothetical protein (RefSeq), at 365,857 to 366,321 _0383 Dshi_0384: Dshi_0384 - hypothetical protein (RefSeq), at 366,443 to 366,901 _0384 Dshi_0385: Dshi_0385 - DNA-directed DNA polymerase (RefSeq), at 366,959 to 368,212 _0385 Position (kb) 366 367Strain fitness (log2 ratio) -2 -1 0 1at 365.517 kb on + strand, within Dshi_0382at 365.529 kb on - strand, within Dshi_0382at 365.656 kb on - strandat 365.666 kb on + strandat 365.778 kb on - strandat 365.865 kb on + strandat 365.928 kb on - strand, within Dshi_0383at 366.028 kb on - strand, within Dshi_0383at 366.337 kb on + strandat 366.369 kb on + strandat 366.369 kb on + strandat 366.369 kb on + strandat 366.377 kb on - strandat 366.784 kb on - strand, within Dshi_0384at 366.937 kb on + strandat 367.049 kb on + strandat 367.071 kb on - strandat 367.073 kb on - strandat 367.127 kb on - strand, within Dshi_0385at 367.283 kb on + strand, within Dshi_0385at 367.295 kb on - strand, within Dshi_0385at 367.386 kb on - strand, within Dshi_0385at 367.386 kb on - strand, within Dshi_0385at 367.452 kb on + strand, within Dshi_0385at 367.533 kb on + strand, within Dshi_0385at 367.567 kb on - strand, within Dshi_0385at 367.678 kb on + strand, within Dshi_0385at 367.704 kb on - strand, within Dshi_0385at 367.780 kb on - strand, within Dshi_0385at 367.853 kb on + strand, within Dshi_0385

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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365,517 + Dshi_0382 0.82 +0.5
365,529 - Dshi_0382 0.83 -1.9
365,656 - +0.5
365,666 + -0.4
365,778 - -0.2
365,865 + -0.2
365,928 - Dshi_0383 0.15 +1.3
366,028 - Dshi_0383 0.37 +0.1
366,337 + -0.7
366,369 + -1.8
366,369 + -0.1
366,369 + -1.5
366,377 - +0.5
366,784 - Dshi_0384 0.74 -1.0
366,937 + -0.3
367,049 + -0.9
367,071 - -0.1
367,073 - -0.2
367,127 - Dshi_0385 0.13 -0.6
367,283 + Dshi_0385 0.26 -0.2
367,295 - Dshi_0385 0.27 +0.4
367,386 - Dshi_0385 0.34 -0.0
367,386 - Dshi_0385 0.34 -0.6
367,452 + Dshi_0385 0.39 -1.2
367,533 + Dshi_0385 0.46 -0.3
367,567 - Dshi_0385 0.48 +0.4
367,678 + Dshi_0385 0.57 -1.1
367,704 - Dshi_0385 0.59 -1.0
367,780 - Dshi_0385 0.65 -1.0
367,853 + Dshi_0385 0.71 -0.1

Or see this region's nucleotide sequence