Strain Fitness in Shewanella amazonensis SB2B around Sama_3504

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
4,136,663	+		Sama_3503	0.62	+0.3
4,136,664	-		Sama_3503	0.62	+0.4
4,136,681	+		Sama_3503	0.62	+2.5
4,136,682	-		Sama_3503	0.62	+5.8
4,136,692	-		Sama_3503	0.63	-2.0
4,136,738	+		Sama_3503	0.65	+0.1
4,136,738	+		Sama_3503	0.65	-2.2
4,136,738	+		Sama_3503	0.65	-1.4
4,136,738	+		Sama_3503	0.65	+5.0
4,136,738	+		Sama_3503	0.65	-3.2
4,136,738	+		Sama_3503	0.65	+1.5
4,136,738	+		Sama_3503	0.65	-0.2
4,136,739	-		Sama_3503	0.65	-0.6
4,136,739	-		Sama_3503	0.65	-0.4
4,136,739	-		Sama_3503	0.65	-0.7
4,136,739	-		Sama_3503	0.65	-2.1
4,136,739	-		Sama_3503	0.65	+0.4
4,136,739	-		Sama_3503	0.65	+0.4
4,136,739	-		Sama_3503	0.65	+0.3
4,136,742	+		Sama_3503	0.65	+0.8
4,136,742	+		Sama_3503	0.65	-0.2
4,136,742	+		Sama_3503	0.65	-1.3
4,136,742	+		Sama_3503	0.65	+0.4
4,136,742	+		Sama_3503	0.65	-1.0
4,136,742	+		Sama_3503	0.65	-1.6
4,136,742	+		Sama_3503	0.65	-1.8
4,136,743	-		Sama_3503	0.65	+0.8
4,136,743	-		Sama_3503	0.65	+0.7
4,136,743	-		Sama_3503	0.65	+1.3
4,136,743	-		Sama_3503	0.65	+2.5
4,136,774	+		Sama_3503	0.66	+0.8
4,136,775	-		Sama_3503	0.66	+0.8
4,136,782	+		Sama_3503	0.66	-0.1
4,136,783	-		Sama_3503	0.67	+0.1
4,136,783	-		Sama_3503	0.67	+0.2
4,136,806	+		Sama_3503	0.67	-0.4
4,136,806	+		Sama_3503	0.67	+2.0
4,136,807	-		Sama_3503	0.67	+1.2
4,136,807	-		Sama_3503	0.67	-2.9
4,136,807	-		Sama_3503	0.67	+3.5
4,136,807	-		Sama_3503	0.67	-0.7
4,136,956	+		Sama_3503	0.73	-2.9
4,136,956	+		Sama_3503	0.73	-0.5
4,136,956	+		Sama_3503	0.73	-1.5
4,137,018	+		Sama_3503	0.76	+0.1
4,137,018	+		Sama_3503	0.76	-2.1
4,137,019	-		Sama_3503	0.76	+1.2
4,137,039	+		Sama_3503	0.77	+2.0
4,137,039	+		Sama_3503	0.77	-0.8
4,137,039	+		Sama_3503	0.77	-1.6
4,137,039	+		Sama_3503	0.77	+2.2
4,137,039	+		Sama_3503	0.77	+0.9
4,137,039	+		Sama_3503	0.77	-1.8
4,137,039	+		Sama_3503	0.77	+0.6
4,137,039	+		Sama_3503	0.77	+0.5
4,137,039	+		Sama_3503	0.77	-1.7
4,137,040	-		Sama_3503	0.77	+1.2
4,137,040	-		Sama_3503	0.77	-1.2
4,137,040	-		Sama_3503	0.77	+0.4
4,137,040	-		Sama_3503	0.77	+0.8
4,137,040	-		Sama_3503	0.77	-1.2
4,137,041	+		Sama_3503	0.77	+0.5
4,137,041	+		Sama_3503	0.77	-1.0
4,137,041	+		Sama_3503	0.77	-0.7
4,137,041	+		Sama_3503	0.77	+2.8
4,137,041	+		Sama_3503	0.77	+2.3
4,137,041	+		Sama_3503	0.77	+3.1
4,137,041	+		Sama_3503	0.77	-0.9
4,137,041	+		Sama_3503	0.77	+3.3
4,137,041	+		Sama_3503	0.77	-1.9
4,137,041	+		Sama_3503	0.77	-1.2
4,137,041	+		Sama_3503	0.77	+2.2
4,137,041	+		Sama_3503	0.77	+0.1
4,137,041	+		Sama_3503	0.77	+0.5
4,137,041	+		Sama_3503	0.77	-1.0
4,137,042	-		Sama_3503	0.77	+0.0
4,137,042	-		Sama_3503	0.77	+0.1
4,137,042	-		Sama_3503	0.77	+2.2
4,137,042	-		Sama_3503	0.77	-0.3
4,137,042	-		Sama_3503	0.77	+1.9
4,137,042	-		Sama_3503	0.77	+0.3
4,137,042	-		Sama_3503	0.77	+0.9
4,137,042	-		Sama_3503	0.77	+0.5
4,137,042	-		Sama_3503	0.77	+1.1
4,137,042	-		Sama_3503	0.77	+0.8
4,137,042	-		Sama_3503	0.77	-0.9
4,137,042	-		Sama_3503	0.77	-1.3
4,137,042	-		Sama_3503	0.77	-0.3
4,137,042	-		Sama_3503	0.77	+0.5
4,137,061	+		Sama_3503	0.78	-1.3
4,137,061	+		Sama_3503	0.78	+0.3
4,137,062	-		Sama_3503	0.78	-2.4
4,137,062	-		Sama_3503	0.78	+2.4
4,137,062	-		Sama_3503	0.78	+3.3
4,137,159	+		Sama_3503	0.82	+0.3
4,137,160	-		Sama_3503	0.82	+0.2
4,137,160	-		Sama_3503	0.82	+0.8
4,137,160	-		Sama_3503	0.82	+1.6
4,137,185	+		Sama_3503	0.83	-1.7
4,137,186	-		Sama_3503	0.83	+0.6
4,137,186	-		Sama_3503	0.83	-1.1
4,137,202	+		Sama_3503	0.83	-0.5
4,137,202	+		Sama_3503	0.83	+1.5
4,137,203	-		Sama_3503	0.83	+0.8
4,137,203	-		Sama_3503	0.83	+0.1
4,137,203	-		Sama_3503	0.83	-1.4
4,137,203	-		Sama_3503	0.83	-2.4
4,137,203	-		Sama_3503	0.83	-1.9
4,137,203	-		Sama_3503	0.83	-0.6
4,137,204	+		Sama_3503	0.83	-1.7
4,137,204	+		Sama_3503	0.83	+5.3
4,137,205	-		Sama_3503	0.83	+0.9
4,137,205	-		Sama_3503	0.83	-1.2
4,137,205	-		Sama_3503	0.83	-2.7
4,137,284	+		Sama_3503	0.87	-1.7
4,137,284	+		Sama_3503	0.87	-0.3
4,137,285	-		Sama_3503	0.87	-2.1
4,137,365	+		Sama_3503	0.90	-0.6
4,137,365	+		Sama_3503	0.90	+1.4
4,137,400	-				+1.9
4,137,454	+				+0.2
4,137,455	-				+0.6
4,137,455	-				+0.5
4,137,455	-				-0.1
4,137,574	+				-0.2
4,137,590	-				-1.2
4,137,590	-				-0.6
4,137,596	+				-0.2
4,137,597	-				-1.4
4,137,597	-				-0.8
4,137,617	-				+3.8
4,137,617	-				+0.5
4,137,617	-				+1.5
4,137,666	+				-1.2
4,137,666	+				+0.1
4,137,666	+				-1.0
4,137,666	+				+2.3
4,137,667	-				-1.5
4,137,667	-				-1.6
4,137,667	-				-1.3
4,137,667	-				+0.2
4,137,667	-				+5.9
4,137,667	-				+0.1
4,137,693	+		Sama_3504	0.10	-0.0
4,137,693	+		Sama_3504	0.10	+4.9
4,137,693	+		Sama_3504	0.10	-2.7
4,137,693	+		Sama_3504	0.10	+2.2
4,137,693	+		Sama_3504	0.10	-3.7
4,137,694	-		Sama_3504	0.10	+0.9
4,137,694	-		Sama_3504	0.10	-1.9
4,137,705	+		Sama_3504	0.12	-3.0
4,137,705	+		Sama_3504	0.12	-0.4
4,137,705	+		Sama_3504	0.12	+1.1
4,137,706	-		Sama_3504	0.12	-0.4
4,137,706	-		Sama_3504	0.12	+6.3
4,137,706	-		Sama_3504	0.12	+1.6
4,137,719	+		Sama_3504	0.14	+3.2
4,137,720	-		Sama_3504	0.14	-0.2
4,137,735	+		Sama_3504	0.16	+2.1
4,137,735	+		Sama_3504	0.16	+0.2
4,137,735	+		Sama_3504	0.16	-0.7
4,137,735	+		Sama_3504	0.16	+2.3
4,137,735	+		Sama_3504	0.16	+3.3
4,137,736	-		Sama_3504	0.16	-0.7
4,137,736	-		Sama_3504	0.16	-0.3
4,137,736	-		Sama_3504	0.16	-1.0
4,137,736	-		Sama_3504	0.16	-1.6
4,137,736	-		Sama_3504	0.16	-0.1
4,137,736	-		Sama_3504	0.16	-0.8
4,137,736	-		Sama_3504	0.16	+0.8
4,137,736	-		Sama_3504	0.16	+5.2
4,137,798	+		Sama_3504	0.24	-2.4
4,137,806	+		Sama_3504	0.25	-1.6
4,137,819	-		Sama_3504	0.27	+1.7
4,137,845	+		Sama_3504	0.31	-0.7
4,137,845	+		Sama_3504	0.31	-1.6
4,137,846	-		Sama_3504	0.31	+1.9
4,137,861	+		Sama_3504	0.33	-1.0
4,137,861	+		Sama_3504	0.33	-1.5
4,137,884	+		Sama_3504	0.36	-2.6
4,137,885	-		Sama_3504	0.36	-0.4
4,137,912	+		Sama_3504	0.39	-2.1
4,137,912	+		Sama_3504	0.39	-0.5
4,137,912	+		Sama_3504	0.39	-0.5
4,137,913	-		Sama_3504	0.40	-1.1
4,137,920	-		Sama_3504	0.41	-0.4
4,137,929	+		Sama_3504	0.42	-1.2
4,137,978	+		Sama_3504	0.48	+4.1
4,138,075	+		Sama_3504	0.61	-1.4
4,138,075	+		Sama_3504	0.61	-3.0
4,138,075	+		Sama_3504	0.61	-0.3
4,138,075	+		Sama_3504	0.61	-0.2
4,138,076	-		Sama_3504	0.61	+2.0
4,138,079	+		Sama_3504	0.62	-0.2
4,138,079	+		Sama_3504	0.62	-2.7
4,138,079	+		Sama_3504	0.62	-0.4
4,138,079	+		Sama_3504	0.62	+4.0
4,138,079	+		Sama_3504	0.62	-0.4
4,138,079	+		Sama_3504	0.62	+0.7
4,138,091	+		Sama_3504	0.63	-1.0
4,138,091	+		Sama_3504	0.63	-0.9
4,138,114	+		Sama_3504	0.66	-1.9
4,138,115	-		Sama_3504	0.66	-0.7
4,138,209	+		Sama_3504	0.79	+0.0
4,138,209	+		Sama_3504	0.79	+0.6
4,138,209	+		Sama_3504	0.79	+0.5
4,138,209	+		Sama_3504	0.79	+0.2
4,138,209	+		Sama_3504	0.79	+4.5
4,138,210	-		Sama_3504	0.79	-1.2
4,138,210	-		Sama_3504	0.79	-0.6
4,138,210	-		Sama_3504	0.79	+0.1
4,138,210	-		Sama_3504	0.79	-0.5
4,138,210	-		Sama_3504	0.79	-0.4
4,138,210	-		Sama_3504	0.79	-0.5
4,138,222	+		Sama_3504	0.81	+1.9
4,138,223	-		Sama_3504	0.81	-1.3
4,138,223	-		Sama_3504	0.81	-2.2
4,138,269	+		Sama_3504	0.87	+0.7
4,138,270	-		Sama_3504	0.87	-1.6
4,138,303	-				-2.0
4,138,330	+				+1.0
4,138,330	+				-0.2
4,138,330	+				+1.4
4,138,330	+				-0.9
4,138,330	+				-0.7
4,138,330	+				+2.1
4,138,330	+				+3.8
4,138,330	+				-0.2
4,138,330	+				-0.3
4,138,331	-				-1.8
4,138,331	-				-2.9
4,138,331	-				+3.0
4,138,331	-				-1.8
4,138,331	-				-1.8
4,138,331	-				-0.8
4,138,331	-				-0.9
4,138,331	-				+0.9
4,138,331	-				-1.7
4,138,331	-				-1.8
4,138,331	-				-2.6
4,138,331	-				-0.6
4,138,331	-				-0.9
4,138,331	-				+0.1
4,138,331	-				-1.6
4,138,331	-				-1.2
4,138,331	-				-1.2
4,138,331	-				+1.5
4,138,331	-				-1.8
4,138,331	-				-0.3
4,138,357	-				+4.1
4,138,383	+				-0.6
4,138,383	+				+0.0
4,138,383	+				+1.5
4,138,383	+				-0.0
4,138,384	-				-2.5
4,138,417	+				+0.6
4,138,417	+				-0.4
4,138,417	+				-1.6
4,138,417	+				+3.0
4,138,417	+				-1.5
4,138,417	+				-1.0
4,138,417	+				+0.8
4,138,417	+				-0.9
4,138,417	+				-0.5
4,138,417	+				+0.5
4,138,418	-				+0.6
4,138,521	-		Sama_3505	0.16	+0.3
4,138,565	-		Sama_3505	0.22	-0.8
4,139,174	+				+0.8
4,139,174	+				-3.5
4,139,175	-				-0.5
4,139,195	+				+3.4
4,139,196	-				+3.5
4,139,198	+				-0.7
4,139,198	+				+0.4
4,139,198	+				+3.9
4,139,198	+				+2.4
4,139,199	-				+0.5
4,139,199	-				-0.8
4,139,199	-				-1.6
4,139,246	+				+0.1
4,139,246	+				-1.6
4,139,246	+				-0.7
4,139,246	+				+3.1
4,139,247	-				+0.3
4,139,247	-				-0.2
4,139,263	-				+0.5
4,139,273	-				-1.8
4,139,298	+		Sama_3506	0.14	-1.1
4,139,323	-		Sama_3506	0.19	-0.3