Strain Fitness in Shewanella amazonensis SB2B around Sama_3459

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
4,087,535	-		Sama_3458	0.36	+1.7
4,087,544	-		Sama_3458	0.37	-1.3
4,087,624	+		Sama_3458	0.43	-1.7
4,087,625	-		Sama_3458	0.43	+2.0
4,087,625	-		Sama_3458	0.43	+1.0
4,087,625	-		Sama_3458	0.43	+2.1
4,087,643	+		Sama_3458	0.44	+1.1
4,087,643	+		Sama_3458	0.44	+0.3
4,087,643	+		Sama_3458	0.44	-0.4
4,087,643	+		Sama_3458	0.44	-2.8
4,087,643	+		Sama_3458	0.44	-0.6
4,087,644	-		Sama_3458	0.45	-3.0
4,087,851	+		Sama_3458	0.61	-0.6
4,087,851	+		Sama_3458	0.61	+0.1
4,087,852	-		Sama_3458	0.61	+6.5
4,087,876	+		Sama_3458	0.63	-1.1
4,087,877	-		Sama_3458	0.63	-0.5
4,087,951	+		Sama_3458	0.69	-1.7
4,087,951	+		Sama_3458	0.69	-0.6
4,087,951	+		Sama_3458	0.69	-1.1
4,087,952	-		Sama_3458	0.69	-0.6
4,087,952	-		Sama_3458	0.69	+0.6
4,087,952	-		Sama_3458	0.69	+5.2
4,087,972	+		Sama_3458	0.71	+1.0
4,087,973	-		Sama_3458	0.71	+2.6
4,087,973	-		Sama_3458	0.71	+1.5
4,087,973	-		Sama_3458	0.71	-0.9
4,087,973	-		Sama_3458	0.71	+0.1
4,088,050	-		Sama_3458	0.77	-0.6
4,088,050	-		Sama_3458	0.77	-2.6
4,088,050	-		Sama_3458	0.77	+0.1
4,088,070	+		Sama_3458	0.78	+0.3
4,088,070	+		Sama_3458	0.78	+2.9
4,088,080	-		Sama_3458	0.79	-1.4
4,088,184	+		Sama_3458	0.88	+0.8
4,088,185	-		Sama_3458	0.88	+2.0
4,088,259	+				-1.2
4,088,260	-				-1.4
4,088,260	-				-1.7
4,088,278	+				-2.0
4,088,278	+				+3.0
4,088,331	+				+2.9
4,088,331	+				-2.1
4,088,331	+				-1.5
4,088,331	+				-0.0
4,088,331	+				+1.2
4,088,331	+				+0.6
4,088,331	+				+1.5
4,088,331	+				+0.3
4,088,331	+				-1.6
4,088,332	-				+0.5
4,088,332	-				+0.3
4,088,332	-				-1.8
4,088,332	-				-2.1
4,088,332	-				+0.2
4,088,332	-				+1.6
4,088,332	-				-1.9
4,088,345	+				+1.8
4,088,346	-				+0.4
4,088,350	+				-2.1
4,088,350	+				+1.6
4,088,350	+				+1.3
4,088,351	-				-0.2
4,088,351	-				-1.0
4,088,351	-				-2.2
4,088,375	+				+2.9
4,088,375	+				-2.4
4,088,376	-				-0.1
4,088,376	-				-0.8
4,088,376	-				-1.1
4,088,376	-				-2.2
4,088,376	-				-0.6
4,088,376	-				+2.2
4,088,419	+				-1.1
4,088,419	+				+0.9
4,088,419	+				+0.2
4,088,419	+				-1.4
4,088,419	+				+0.7
4,088,419	+				-1.1
4,088,419	+				-1.3
4,088,419	+				-0.4
4,088,420	-				-1.2
4,088,420	-				-0.7
4,088,420	-				-1.2
4,088,420	-				+0.1
4,088,420	-				+1.6
4,088,512	+				-1.9
4,088,512	+				+0.5
4,088,513	-				+1.1
4,088,530	+				-0.5
4,088,572	+		Sama_3459	0.15	-1.3
4,088,617	+		Sama_3459	0.25	-1.1
4,088,618	-		Sama_3459	0.26	-3.3
4,088,644	+		Sama_3459	0.32	+1.4
4,088,700	-		Sama_3459	0.45	+1.6
4,088,769	+		Sama_3459	0.61	-1.8
4,088,769	+		Sama_3459	0.61	+0.4
4,088,770	-		Sama_3459	0.61	-0.1
4,088,813	+		Sama_3459	0.71	+1.9
4,088,813	+		Sama_3459	0.71	-1.9
4,088,813	+		Sama_3459	0.71	+1.1
4,088,813	+		Sama_3459	0.71	-1.9
4,088,813	+		Sama_3459	0.71	+1.7
4,088,814	-		Sama_3459	0.71	-1.5
4,088,814	-		Sama_3459	0.71	-0.7
4,088,814	-		Sama_3459	0.71	-2.7
4,088,814	-		Sama_3459	0.71	-1.7
4,088,814	-		Sama_3459	0.71	-0.7
4,088,814	-		Sama_3459	0.71	+1.2
4,088,858	+		Sama_3459	0.81	-0.9
4,088,859	-		Sama_3459	0.81	+3.4
4,088,859	-		Sama_3459	0.81	-0.2
4,088,859	-		Sama_3459	0.81	+3.2
4,088,860	+		Sama_3459	0.82	-0.9
4,088,860	+		Sama_3459	0.82	-2.2
4,088,860	+		Sama_3459	0.82	+0.2
4,088,860	+		Sama_3459	0.82	+0.2
4,088,860	+		Sama_3459	0.82	-0.6
4,088,860	+		Sama_3459	0.82	-2.6
4,088,860	+		Sama_3459	0.82	-0.4
4,088,861	-		Sama_3459	0.82	+0.1
4,088,861	-		Sama_3459	0.82	+1.3
4,088,936	+				-2.0
4,088,966	+				-0.3
4,088,967	-				+0.2
4,089,027	+				+0.2
4,089,027	+				-1.6
4,089,027	+				+2.4
4,089,027	+				-0.4
4,089,027	+				+0.4
4,089,028	-				+1.5
4,089,028	-				-0.7
4,089,028	-				-0.9
4,089,028	-				-0.0
4,089,028	-				+0.5
4,089,128	-				+4.1
4,089,137	+				-1.4
4,089,137	+				+0.4
4,089,137	+				-2.1
4,089,138	-				+0.2
4,089,138	-				-1.4
4,089,138	-				-1.6
4,089,138	-				-3.1
4,089,138	-				-1.1
4,089,138	-				+1.0
4,089,143	+				-1.1
4,089,143	+				-0.2
4,089,158	+				+0.2
4,089,158	+				-1.8
4,089,158	+				-2.3
4,089,159	-				-0.7
4,089,166	+				+0.3
4,089,179	+				-0.8
4,089,190	+				-0.8
4,089,190	+				-1.4
4,089,190	+				-0.4
4,089,190	+				+0.2
4,089,190	+				-0.0
4,089,190	+				-0.2
4,089,191	-				+1.5
4,089,191	-				-1.5
4,089,191	-				-1.0
4,089,202	+				-2.3
4,089,202	+				-1.7
4,089,203	-				+3.2
4,089,203	-				-1.3
4,089,241	+				-1.6
4,089,303	+				-0.6
4,089,303	+				-3.1
4,089,303	+				-2.8
4,089,303	+				-2.7
4,089,303	+				+0.3
4,089,303	+				-0.6
4,089,304	-				-1.5
4,089,304	-				+0.3
4,089,304	-				-1.3
4,089,370	+				-1.6
4,089,370	+				-2.2
4,089,370	+				-2.9
4,089,370	+				-0.1
4,089,371	-				-2.8
4,089,371	-				-3.0
4,089,504	+		Sama_3460	0.16	+3.6
4,089,504	+		Sama_3460	0.16	-1.8
4,089,504	+		Sama_3460	0.16	-0.9
4,089,505	-		Sama_3460	0.17	-1.0
4,089,539	-		Sama_3460	0.18	-1.8
4,089,539	-		Sama_3460	0.18	-3.3
4,089,724	+		Sama_3460	0.29	-0.7
4,089,724	+		Sama_3460	0.29	-1.2
4,089,724	+		Sama_3460	0.29	-1.9
4,089,724	+		Sama_3460	0.29	-2.2
4,089,725	-		Sama_3460	0.29	+0.1
4,089,725	-		Sama_3460	0.29	-1.4
4,089,725	-		Sama_3460	0.29	-0.2
4,089,738	-		Sama_3460	0.30	-0.2
4,089,738	-		Sama_3460	0.30	+3.8
4,089,738	-		Sama_3460	0.30	-2.5
4,089,752	+		Sama_3460	0.31	-0.2
4,089,788	+		Sama_3460	0.33	-1.5
4,089,788	+		Sama_3460	0.33	+4.1
4,089,788	+		Sama_3460	0.33	+0.2
4,089,788	+		Sama_3460	0.33	-2.8
4,089,789	-		Sama_3460	0.33	-1.8
4,089,789	-		Sama_3460	0.33	-1.5
4,089,817	+		Sama_3460	0.35	-0.5
4,089,818	-		Sama_3460	0.35	+0.3
4,089,830	+		Sama_3460	0.35	-3.0
4,089,830	+		Sama_3460	0.35	+3.8
4,089,830	+		Sama_3460	0.35	-1.9
4,089,830	+		Sama_3460	0.35	-1.5
4,089,830	+		Sama_3460	0.35	+0.6
4,089,830	+		Sama_3460	0.35	-3.4
4,089,831	-		Sama_3460	0.35	-2.7
4,089,831	-		Sama_3460	0.35	-1.1
4,089,831	-		Sama_3460	0.35	-1.9
4,089,831	-		Sama_3460	0.35	-0.2
4,089,831	-		Sama_3460	0.35	-1.2
4,089,831	-		Sama_3460	0.35	+2.5
4,089,913	-		Sama_3460	0.40	-0.6