Strain Fitness in Shewanella amazonensis SB2B around Sama_3446

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
4,076,409	+		Sama_3444	0.88	+3.3
4,076,409	+		Sama_3444	0.88	-1.3
4,076,409	+		Sama_3444	0.88	+3.8
4,076,409	+		Sama_3444	0.88	-1.2
4,076,409	+		Sama_3444	0.88	-0.4
4,076,409	+		Sama_3444	0.88	+0.7
4,076,409	+		Sama_3444	0.88	-2.7
4,076,409	+		Sama_3444	0.88	+0.6
4,076,409	+		Sama_3444	0.88	-1.1
4,076,409	+		Sama_3444	0.88	+2.0
4,076,410	-		Sama_3444	0.88	+0.1
4,076,410	-		Sama_3444	0.88	+0.0
4,076,410	-		Sama_3444	0.88	+1.1
4,076,410	-		Sama_3444	0.88	-0.2
4,076,410	-		Sama_3444	0.88	-0.9
4,076,410	-		Sama_3444	0.88	-0.2
4,076,464	+				+0.6
4,076,473	+				+1.0
4,076,473	+				-1.9
4,076,473	+				+3.4
4,076,556	-				+4.1
4,076,588	+				-0.7
4,076,589	-				+2.2
4,076,592	+				-1.6
4,076,593	-				-0.8
4,076,593	-				-0.9
4,076,593	-				-0.4
4,076,601	+				-1.3
4,076,602	-				-0.0
4,076,626	-				-0.2
4,076,763	+				+1.8
4,076,763	+				+0.7
4,076,764	-				+0.5
4,076,764	-				-0.8
4,076,764	-				-2.7
4,076,803	+				-0.3
4,076,865	+		Sama_3445	0.15	-2.3
4,076,866	-		Sama_3445	0.15	-1.4
4,076,875	+		Sama_3445	0.16	-3.1
4,076,875	+		Sama_3445	0.16	-1.6
4,076,875	+		Sama_3445	0.16	+0.2
4,076,876	-		Sama_3445	0.16	-0.8
4,076,893	+		Sama_3445	0.19	-0.3
4,076,894	-		Sama_3445	0.19	+0.2
4,076,894	-		Sama_3445	0.19	-0.8
4,077,009	-		Sama_3445	0.37	-0.7
4,077,046	-		Sama_3445	0.43	-2.6
4,077,078	+		Sama_3445	0.48	+0.1
4,077,078	+		Sama_3445	0.48	+0.1
4,077,082	-		Sama_3445	0.48	-0.9
4,077,082	-		Sama_3445	0.48	+0.1
4,077,082	-		Sama_3445	0.48	+4.6
4,077,128	-		Sama_3445	0.56	+6.8
4,077,156	+		Sama_3445	0.60	-1.8
4,077,157	-		Sama_3445	0.60	-2.6
4,077,215	+		Sama_3445	0.69	-0.7
4,077,264	+		Sama_3445	0.77	-0.8
4,077,264	+		Sama_3445	0.77	+0.8
4,077,290	+		Sama_3445	0.81	-1.6
4,077,340	-		Sama_3445	0.89	-1.0
4,077,342	+		Sama_3445	0.89	-0.3
4,077,343	-		Sama_3445	0.89	-1.1
4,077,368	+				-1.6
4,077,368	+				-1.7
4,077,368	+				-0.3
4,077,369	-				+1.3
4,077,372	+				+1.8
4,077,372	+				-2.9
4,077,372	+				-0.3
4,077,372	+				+1.9
4,077,372	+				+1.5
4,077,372	+				-1.0
4,077,372	+				+0.7
4,077,373	-				-1.0
4,077,373	-				-0.8
4,077,373	-				-1.9
4,077,373	-				+2.6
4,077,373	-				+1.2
4,077,373	-				+0.6
4,077,373	-				+4.8
4,077,373	-				-0.9
4,077,373	-				-0.5
4,077,373	-				-2.3
4,077,373	-				-0.6
4,077,374	+				+1.2
4,077,374	+				-1.7
4,077,374	+				+1.0
4,077,374	+				+2.3
4,077,374	+				-0.7
4,077,374	+				+1.1
4,077,374	+				-0.7
4,077,374	+				-0.4
4,077,374	+				+4.3
4,077,374	+				-1.9
4,077,374	+				-0.2
4,077,374	+				-1.7
4,077,374	+				+1.5
4,077,374	+				-0.0
4,077,374	+				-1.9
4,077,374	+				-1.3
4,077,374	+				-0.3
4,077,374	+				-1.0
4,077,374	+				-1.3
4,077,374	+				-0.6
4,077,374	+				-1.3
4,077,374	+				-2.6
4,077,375	-				+0.3
4,077,375	-				+2.3
4,077,375	-				-0.2
4,077,375	-				-0.8
4,077,375	-				-0.8
4,077,375	-				-0.8
4,077,375	-				+0.7
4,077,375	-				-0.6
4,077,375	-				+2.9
4,077,375	-				-2.2
4,077,375	-				+0.3
4,077,375	-				-0.3
4,077,375	-				+2.1
4,077,375	-				-1.3
4,077,375	-				+1.1
4,077,375	-				-0.7
4,077,375	-				-1.0
4,077,375	-				+4.3
4,077,375	-				+0.9
4,077,375	-				-2.0
4,077,510	+		Sama_3446	0.29	-2.7
4,077,510	+		Sama_3446	0.29	-0.2
4,077,510	+		Sama_3446	0.29	-0.8
4,077,510	+		Sama_3446	0.29	-0.8
4,077,510	+		Sama_3446	0.29	-0.2
4,077,511	-		Sama_3446	0.29	-0.9
4,077,511	-		Sama_3446	0.29	+2.5
4,077,511	-		Sama_3446	0.29	-1.2
4,077,649	-		Sama_3446	0.68	+0.1
4,077,718	+		Sama_3446	0.88	-1.9
4,077,719	-		Sama_3446	0.88	-0.7
4,077,719	-		Sama_3446	0.88	-0.5
4,077,729	+				+1.5
4,077,729	+				+3.0
4,077,730	-				-1.3
4,077,730	-				-0.8
4,077,730	-				-1.5
4,077,730	-				-1.9
4,077,730	-				-1.3
4,077,745	+				+2.3
4,077,745	+				-0.2
4,077,745	+				-0.3
4,077,753	+				-0.3
4,077,753	+				+0.1
4,077,753	+				-0.8
4,077,753	+				-0.2
4,077,753	+				-0.3
4,077,753	+				-0.1
4,077,754	-				-0.3
4,077,754	-				+0.2
4,077,754	-				-0.3
4,077,754	-				-1.1
4,077,754	-				-0.8
4,077,754	-				+0.6
4,077,754	-				+0.1
4,077,754	-				-0.3
4,077,754	-				-1.2
4,077,754	-				+0.7
4,077,754	-				-0.5
4,077,754	-				-0.3
4,077,754	-				-1.6
4,077,754	-				+0.2
4,077,754	-				+3.8
4,077,754	-				-0.7
4,077,754	-				-2.2
4,077,754	-				-0.9
4,077,755	+				-0.4
4,077,755	+				+0.8
4,077,755	+				-0.2
4,077,755	+				-0.7
4,077,755	+				-1.2
4,077,755	+				-2.8
4,077,755	+				-1.6
4,077,755	+				-0.2
4,077,755	+				-0.2
4,077,755	+				+1.0
4,077,755	+				-1.6
4,077,755	+				+1.3
4,077,755	+				-0.1
4,077,755	+				-0.2
4,077,755	+				-1.5
4,077,755	+				+4.0
4,077,755	+				+1.1
4,077,755	+				-0.7
4,077,755	+				+2.7
4,077,755	+				-0.1
4,077,755	+				+1.2
4,077,755	+				-0.8
4,077,755	+				+0.4
4,077,756	-				-2.1
4,077,756	-				+0.7
4,077,756	-				-2.1
4,077,756	-				-0.1
4,077,756	-				+2.7
4,077,756	-				+1.1
4,077,756	-				-0.3
4,077,756	-				-1.5
4,077,756	-				-0.9
4,077,756	-				-0.9
4,077,756	-				-1.5
4,077,756	-				-2.3
4,077,756	-				+0.1
4,077,756	-				-0.8
4,077,756	-				-0.6
4,077,756	-				-0.9
4,077,756	-				+0.5
4,077,756	-				+2.1
4,077,756	-				-0.7
4,077,756	-				+1.3
4,077,756	-				-1.2
4,077,756	-				-1.7
4,077,756	-				-1.6
4,077,756	-				+0.6
4,077,756	-				+4.1
4,077,756	-				+0.3
4,077,756	-				-0.3
4,077,756	-				-1.0
4,077,756	-				+0.3
4,077,756	-				+5.3
4,077,785	+				-0.6
4,077,785	+				-1.0
4,077,785	+				-0.3
4,077,786	-				+5.7
4,077,786	-				-0.9
4,077,786	-				+3.6
4,077,786	-				-2.2
4,077,786	-				+3.9
4,077,786	-				+1.7
4,077,816	+				-2.2
4,077,890	-				-1.2
4,077,896	+				-1.7
4,077,896	+				-0.6
4,077,896	+				-0.5
4,077,896	+				-1.0
4,077,897	-				-2.3
4,077,933	+		Sama_3447	0.12	+0.5
4,077,933	+		Sama_3447	0.12	-0.9
4,077,933	+		Sama_3447	0.12	+1.3
4,077,933	+		Sama_3447	0.12	-0.5
4,077,934	-		Sama_3447	0.13	+1.5
4,078,057	+		Sama_3447	0.32	+0.8
4,078,086	+		Sama_3447	0.37	-0.8
4,078,087	-		Sama_3447	0.37	-1.7
4,078,087	-		Sama_3447	0.37	-1.0
4,078,096	-		Sama_3447	0.38	-0.3
4,078,140	-		Sama_3447	0.45	-1.6
4,078,209	+		Sama_3447	0.56	+0.2
4,078,209	+		Sama_3447	0.56	-0.4
4,078,209	+		Sama_3447	0.56	-0.9
4,078,209	+		Sama_3447	0.56	-1.6
4,078,210	-		Sama_3447	0.56	+0.5
4,078,210	-		Sama_3447	0.56	+1.8
4,078,210	-		Sama_3447	0.56	+1.1
4,078,210	-		Sama_3447	0.56	+0.1
4,078,210	-		Sama_3447	0.56	-0.2
4,078,210	-		Sama_3447	0.56	-1.4
4,078,210	-		Sama_3447	0.56	+0.2
4,078,232	-		Sama_3447	0.60	+1.1
4,078,331	+		Sama_3447	0.76	+3.3
4,078,331	+		Sama_3447	0.76	+0.3
4,078,332	-		Sama_3447	0.76	+0.7
4,078,332	-		Sama_3447	0.76	+4.5
4,078,332	-		Sama_3447	0.76	-0.7
4,078,423	-				-2.1
4,078,445	+				-0.8
4,078,464	+				-2.4
4,078,464	+				-1.3
4,078,464	+				+0.4
4,078,464	+				-0.6
4,078,464	+				+0.3
4,078,464	+				-0.6
4,078,464	+				-2.5
4,078,465	-				+2.1
4,078,488	+				-0.1
4,078,488	+				-0.3
4,078,489	-				+0.7
4,078,498	+				-0.3
4,078,498	+				-0.9
4,078,498	+				+1.7
4,078,499	-				-1.7
4,078,499	-				-0.9
4,078,499	-				-1.4
4,078,499	-				-0.2
4,078,499	-				+3.8
4,078,499	-				-1.2
4,078,499	-				+0.5
4,078,516	+				-1.6
4,078,517	-				-0.8
4,078,519	+				-1.2
4,078,519	+				-0.8
4,078,520	-				+1.7
4,078,520	-				-0.5
4,078,520	-				-0.8
4,078,555	+				-2.7
4,078,555	+				-1.2
4,078,556	-				+1.3
4,078,565	+				-0.6
4,078,565	+				+1.7
4,078,565	+				-1.3
4,078,565	+				-0.9
4,078,566	-				+0.7
4,078,566	-				-1.3
4,078,566	-				+3.2
4,078,566	-				+0.2
4,078,584	-				-1.3
4,078,584	-				+1.5
4,078,663	+				-0.9
4,078,664	-				+1.7
4,078,664	-				-0.9
4,078,675	+				-0.4
4,078,675	+				-0.5
4,078,675	+				-0.7
4,078,675	+				-1.7
4,078,675	+				-1.3
4,078,675	+				+1.3
4,078,676	-				-0.7
4,078,676	-				-0.9
4,078,676	-				+2.0
4,078,676	-				-0.2
4,078,676	-				-0.2
4,078,739	+		Sama_3448	0.14	-0.9