Strain Fitness in Shewanella amazonensis SB2B around Sama_3347

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,972,583	+		Sama_3345	0.77	+1.7
3,972,583	+		Sama_3345	0.77	-2.0
3,972,583	+		Sama_3345	0.77	+0.6
3,972,584	-		Sama_3345	0.77	-0.6
3,972,584	-		Sama_3345	0.77	-1.0
3,972,584	-		Sama_3345	0.77	-0.2
3,972,584	-		Sama_3345	0.77	-0.4
3,972,584	-		Sama_3345	0.77	+2.9
3,972,584	-		Sama_3345	0.77	+3.5
3,972,587	+		Sama_3345	0.78	+4.7
3,972,587	+		Sama_3345	0.78	-0.2
3,972,587	+		Sama_3345	0.78	+3.5
3,972,587	+		Sama_3345	0.78	+1.7
3,972,587	+		Sama_3345	0.78	+0.8
3,972,587	+		Sama_3345	0.78	+4.6
3,972,587	+		Sama_3345	0.78	+0.7
3,972,587	+		Sama_3345	0.78	-2.8
3,972,587	+		Sama_3345	0.78	+1.3
3,972,587	+		Sama_3345	0.78	+2.1
3,972,587	+		Sama_3345	0.78	-2.3
3,972,587	+		Sama_3345	0.78	-2.3
3,972,587	+		Sama_3345	0.78	+0.5
3,972,587	+		Sama_3345	0.78	+1.3
3,972,587	+		Sama_3345	0.78	-2.1
3,972,587	+		Sama_3345	0.78	+1.3
3,972,587	+		Sama_3345	0.78	+0.7
3,972,587	+		Sama_3345	0.78	+0.5
3,972,587	+		Sama_3345	0.78	-0.2
3,972,587	+		Sama_3345	0.78	-0.3
3,972,587	+		Sama_3345	0.78	+4.0
3,972,588	-		Sama_3345	0.79	-1.6
3,972,588	-		Sama_3345	0.79	-0.6
3,972,588	-		Sama_3345	0.79	-0.6
3,972,588	-		Sama_3345	0.79	-2.1
3,972,588	-		Sama_3345	0.79	+0.7
3,972,588	-		Sama_3345	0.79	-0.7
3,972,588	-		Sama_3345	0.79	-1.5
3,972,588	-		Sama_3345	0.79	+0.6
3,972,588	-		Sama_3345	0.79	-0.5
3,972,588	-		Sama_3345	0.79	+1.5
3,972,588	-		Sama_3345	0.79	+1.7
3,972,588	-		Sama_3345	0.79	-0.3
3,972,588	-		Sama_3345	0.79	+5.0
3,972,588	-		Sama_3345	0.79	+1.0
3,972,588	-		Sama_3345	0.79	-1.4
3,972,588	-		Sama_3345	0.79	-0.9
3,972,588	-		Sama_3345	0.79	+3.5
3,972,588	-		Sama_3345	0.79	-0.7
3,972,588	-		Sama_3345	0.79	+0.4
3,972,588	-		Sama_3345	0.79	-2.3
3,972,588	-		Sama_3345	0.79	-2.5
3,972,588	-		Sama_3345	0.79	-1.7
3,972,588	-		Sama_3345	0.79	+1.1
3,972,588	-		Sama_3345	0.79	+0.3
3,972,588	-		Sama_3345	0.79	+0.3
3,972,588	-		Sama_3345	0.79	-0.6
3,972,588	-		Sama_3345	0.79	+0.3
3,972,650	+				+4.1
3,972,650	+				-2.1
3,972,664	+				+1.0
3,972,664	+				-0.3
3,972,665	-				-0.6
3,972,665	-				+1.4
3,972,698	-				-0.5
3,972,708	+				-2.8
3,972,708	+				+0.1
3,972,708	+				+1.3
3,972,708	+				+4.3
3,972,709	-				+1.4
3,972,709	-				-1.6
3,972,709	-				-1.2
3,972,709	-				-0.3
3,972,709	-				-0.5
3,972,709	-				-2.0
3,972,803	+				-0.5
3,972,803	+				+0.6
3,972,803	+				-1.5
3,972,804	-				-1.1
3,972,804	-				-1.2
3,972,804	-				-0.4
3,972,840	+				+2.9
3,972,840	+				-0.2
3,972,840	+				+3.8
3,972,840	+				+0.7
3,972,841	-				+0.2
3,972,841	-				-0.5
3,972,864	+				+1.7
3,972,865	-				-0.0
3,972,865	-				-1.2
3,972,865	-				+1.3
3,972,865	-				-3.6
3,972,865	-				+0.4
3,972,868	+				-2.4
3,972,868	+				-1.2
3,972,868	+				-0.3
3,972,868	+				-0.9
3,972,869	-				-1.9
3,972,869	-				-0.7
3,972,869	-				-0.6
3,972,869	-				-1.0
3,972,869	-				-2.8
3,972,869	-				+0.8
3,972,871	-				+1.1
3,972,871	-				+0.3
3,972,945	+				+0.4
3,972,945	+				-0.8
3,972,945	+				-1.6
3,972,945	+				+1.4
3,972,945	+				+2.0
3,972,945	+				+0.5
3,972,945	+				+0.3
3,972,946	-				+0.8
3,972,946	-				-0.7
3,972,946	-				-1.8
3,972,965	+				-1.5
3,972,965	+				+0.7
3,972,969	+				+0.8
3,972,976	+				+0.6
3,972,976	+				+0.9
3,972,977	-				+3.3
3,973,058	+		Sama_3346	0.19	-0.9
3,973,058	+		Sama_3346	0.19	-0.6
3,973,058	+		Sama_3346	0.19	-0.9
3,973,058	+		Sama_3346	0.19	-2.6
3,973,058	+		Sama_3346	0.19	+4.5
3,973,058	+		Sama_3346	0.19	-1.5
3,973,059	-		Sama_3346	0.19	-0.4
3,973,059	-		Sama_3346	0.19	-0.1
3,973,065	+		Sama_3346	0.20	-0.2
3,973,066	-		Sama_3346	0.20	+0.1
3,973,151	+		Sama_3346	0.36	-0.3
3,973,151	+		Sama_3346	0.36	+1.3
3,973,152	-		Sama_3346	0.36	+0.4
3,973,152	-		Sama_3346	0.36	+2.0
3,973,152	-		Sama_3346	0.36	-0.9
3,973,219	+		Sama_3346	0.48	-0.5
3,973,219	+		Sama_3346	0.48	+0.3
3,973,220	-		Sama_3346	0.48	-0.3
3,973,388	+		Sama_3346	0.79	-0.3
3,973,394	+		Sama_3346	0.80	-0.3
3,973,395	-		Sama_3346	0.80	-2.2
3,973,395	-		Sama_3346	0.80	+5.0
3,973,395	-		Sama_3346	0.80	+2.7
3,973,395	-		Sama_3346	0.80	-0.4
3,973,395	-		Sama_3346	0.80	+0.5
3,973,395	-		Sama_3346	0.80	-1.5
3,973,411	-		Sama_3346	0.83	+1.4
3,973,434	+		Sama_3346	0.87	+1.9
3,973,435	-		Sama_3346	0.87	+1.4
3,973,435	-		Sama_3346	0.87	+0.1
3,973,450	+				-1.0
3,973,493	+				-0.3
3,973,493	+				+2.9
3,973,502	+				+0.3
3,973,502	+				+0.7
3,973,503	-				-0.3
3,973,515	+				-1.1
3,973,515	+				-1.0
3,973,515	+				+1.7
3,973,516	-				+0.7
3,973,516	-				+1.2
3,973,772	+		Sama_3347	0.49	-1.3
3,973,772	+		Sama_3347	0.49	-0.9
3,973,891	+		Sama_3347	0.76	-0.4
3,973,891	+		Sama_3347	0.76	-0.6
3,973,892	-		Sama_3347	0.77	-0.5
3,973,918	+		Sama_3347	0.83	+0.0
3,973,919	-		Sama_3347	0.83	-0.2
3,973,919	-		Sama_3347	0.83	+2.4
3,973,935	+		Sama_3347	0.86	-2.1
3,973,935	+		Sama_3347	0.86	+1.8
3,973,935	+		Sama_3347	0.86	+0.8
3,973,935	+		Sama_3347	0.86	+0.1
3,973,935	+		Sama_3347	0.86	+0.1
3,973,936	-		Sama_3347	0.87	-0.2
3,973,936	-		Sama_3347	0.87	+0.2
3,973,936	-		Sama_3347	0.87	+1.0
3,973,936	-		Sama_3347	0.87	-0.8
3,973,936	-		Sama_3347	0.87	-0.3
3,973,936	-		Sama_3347	0.87	-0.5
3,973,936	-		Sama_3347	0.87	+1.5
3,973,936	-		Sama_3347	0.87	-1.0
3,973,938	+		Sama_3347	0.87	-0.8
3,973,938	+		Sama_3347	0.87	+3.6
3,973,938	+		Sama_3347	0.87	-1.7
3,973,938	+		Sama_3347	0.87	-1.5
3,973,938	+		Sama_3347	0.87	+0.2
3,973,938	+		Sama_3347	0.87	-0.2
3,973,938	+		Sama_3347	0.87	-0.2
3,973,938	+		Sama_3347	0.87	+0.0
3,973,938	+		Sama_3347	0.87	-1.1
3,973,939	-		Sama_3347	0.87	+1.0
3,973,939	-		Sama_3347	0.87	+1.3
3,973,939	-		Sama_3347	0.87	+0.7
3,973,939	-		Sama_3347	0.87	+0.1
3,973,939	-		Sama_3347	0.87	+1.6
3,973,939	-		Sama_3347	0.87	-1.7
3,973,939	-		Sama_3347	0.87	+0.4
3,973,939	-		Sama_3347	0.87	-1.6
3,973,939	-		Sama_3347	0.87	-1.9
3,973,939	-		Sama_3347	0.87	-2.3
3,973,942	+		Sama_3347	0.88	+0.5
3,973,942	+		Sama_3347	0.88	-0.7
3,973,942	+		Sama_3347	0.88	+2.5
3,973,943	-		Sama_3347	0.88	-2.0
3,973,977	-				-0.1
3,974,040	+				-0.0
3,974,041	-				+5.3
3,974,041	-				-1.4
3,974,041	-				-2.6
3,974,063	+				-1.3
3,974,063	+				-0.7
3,974,064	-				-1.5
3,974,064	-				-0.6
3,974,064	-				+2.9
3,974,064	-				+1.2
3,974,064	-				-1.3
3,974,064	-				-2.2
3,974,064	-				+2.6
3,974,073	-				+0.9
3,974,073	-				+0.8
3,974,073	-				+0.0
3,974,087	+				+0.7
3,974,088	-				-1.1
3,974,093	+				-1.8
3,974,093	+				+1.1
3,974,094	-				+2.8
3,974,094	-				-1.2
3,974,150	+		Sama_3348	0.17	+1.2
3,974,151	-		Sama_3348	0.17	-1.2
3,974,151	-		Sama_3348	0.17	+0.6
3,974,173	+		Sama_3348	0.21	-0.9
3,974,173	+		Sama_3348	0.21	+0.7
3,974,173	+		Sama_3348	0.21	-3.0
3,974,173	+		Sama_3348	0.21	+1.3
3,974,174	-		Sama_3348	0.22	+1.9
3,974,174	-		Sama_3348	0.22	+0.1
3,974,174	-		Sama_3348	0.22	+0.2
3,974,174	-		Sama_3348	0.22	-0.7
3,974,174	-		Sama_3348	0.22	+0.2
3,974,220	+		Sama_3348	0.31	-1.7
3,974,220	+		Sama_3348	0.31	+2.5
3,974,220	+		Sama_3348	0.31	-0.6
3,974,221	-		Sama_3348	0.31	-0.0
3,974,287	+		Sama_3348	0.45	-2.3
3,974,288	-		Sama_3348	0.45	-0.4
3,974,288	-		Sama_3348	0.45	+0.0
3,974,288	-		Sama_3348	0.45	-1.3
3,974,299	-		Sama_3348	0.47	+0.1
3,974,489	+		Sama_3348	0.86	-0.9
3,974,489	+		Sama_3348	0.86	-1.5
3,974,518	+				-0.1
3,974,518	+				-1.1
3,974,519	-				-0.4
3,974,519	-				-1.2
3,974,519	-				+0.8
3,974,557	+				+0.5
3,974,557	+				+0.5
3,974,557	+				-1.2
3,974,558	-				+2.3
3,974,558	-				+2.0
3,974,558	-				-0.2
3,974,558	-				+2.7
3,974,558	-				+1.7
3,974,558	-				+0.6
3,974,558	-				-0.5
3,974,571	+				-0.1
3,974,571	+				+0.6
3,974,571	+				+1.3
3,974,571	+				-0.9
3,974,572	-				+1.2
3,974,607	+				-1.0
3,974,608	-				+1.9
3,974,608	-				+0.7
3,974,608	-				-0.0
3,974,617	+				+1.7
3,974,617	+				+0.5
3,974,617	+				-1.1
3,974,618	-				+1.6
3,974,618	-				-0.3
3,974,678	+				-0.2
3,974,678	+				+4.3
3,974,678	+				-1.8
3,974,678	+				+1.2
3,974,678	+				+0.6
3,974,679	-				+2.6
3,974,679	-				+0.8
3,974,679	-				-0.4
3,974,693	+				+0.9
3,974,702	+				+0.4
3,974,702	+				+2.2
3,974,702	+				-0.2
3,974,702	+				-0.6
3,974,703	-				-1.2
3,974,703	-				+1.9
3,974,703	-				+0.1
3,974,703	-				-1.3
3,974,703	-				-3.0
3,974,703	-				-0.3
3,974,703	-				-0.1
3,974,703	-				-2.3
3,974,708	+				-0.8
3,974,708	+				-2.7
3,974,753	+				+2.2
3,974,754	-				-1.1
3,974,786	+				-1.4
3,974,787	-				+0.5
3,974,901	-		Sama_3349	0.12	-0.5
3,974,933	+		Sama_3349	0.13	-1.2
3,974,933	+		Sama_3349	0.13	-1.5
3,974,943	-		Sama_3349	0.14	+0.1
3,974,943	-		Sama_3349	0.14	+1.7
3,974,958	-		Sama_3349	0.14	+0.6