Strain Fitness in Shewanella amazonensis SB2B around Sama_3325

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,951,406	+		Sama_3322	0.69	-1.5
3,951,406	+		Sama_3322	0.69	-1.1
3,951,407	-		Sama_3322	0.69	+0.1
3,951,407	-		Sama_3322	0.69	-0.1
3,951,407	-		Sama_3322	0.69	-0.6
3,951,407	-		Sama_3322	0.69	+0.6
3,951,440	+		Sama_3322	0.73	+1.0
3,951,440	+		Sama_3322	0.73	-0.6
3,951,441	-		Sama_3322	0.73	+0.5
3,951,441	-		Sama_3322	0.73	+0.5
3,951,441	-		Sama_3322	0.73	-1.1
3,951,465	-		Sama_3322	0.75	-2.6
3,951,509	+		Sama_3322	0.80	-1.0
3,951,509	+		Sama_3322	0.80	-2.9
3,951,509	+		Sama_3322	0.80	-1.8
3,951,509	+		Sama_3322	0.80	-0.4
3,951,509	+		Sama_3322	0.80	-0.9
3,951,510	-		Sama_3322	0.80	+0.3
3,951,510	-		Sama_3322	0.80	-1.7
3,951,517	+		Sama_3322	0.81	+0.1
3,951,540	+		Sama_3322	0.83	-1.5
3,951,555	+		Sama_3322	0.84	-0.2
3,951,555	+		Sama_3322	0.84	+2.1
3,951,555	+		Sama_3322	0.84	-1.4
3,951,556	-		Sama_3322	0.85	-0.3
3,951,556	-		Sama_3322	0.85	+4.0
3,951,556	-		Sama_3322	0.85	+0.1
3,951,556	-		Sama_3322	0.85	+0.1
3,951,556	-		Sama_3322	0.85	+0.7
3,951,556	-		Sama_3322	0.85	+0.9
3,951,585	+		Sama_3322	0.88	+0.7
3,951,662	+				-0.1
3,951,662	+				-2.3
3,951,662	+				+2.1
3,951,662	+				-1.7
3,951,663	-				+1.5
3,951,720	+				-1.0
3,951,720	+				+2.3
3,951,721	-				-0.9
3,951,721	-				+0.5
3,951,721	-				-0.5
3,951,721	-				-1.5
3,951,796	+		Sama_3323	0.30	-0.7
3,951,797	-		Sama_3323	0.30	-0.4
3,951,806	+		Sama_3323	0.33	-1.1
3,951,806	+		Sama_3323	0.33	-0.1
3,951,806	+		Sama_3323	0.33	-0.3
3,951,807	-		Sama_3323	0.34	-1.2
3,952,001	+				-0.0
3,952,001	+				-1.4
3,952,001	+				-1.7
3,952,001	+				+0.7
3,952,001	+				-0.2
3,952,001	+				+0.5
3,952,001	+				-0.7
3,952,001	+				-0.3
3,952,002	-				-0.6
3,952,002	-				+3.2
3,952,002	-				+3.2
3,952,002	-				-1.7
3,952,002	-				-0.2
3,952,002	-				-0.7
3,952,002	-				-1.3
3,952,002	-				-0.1
3,952,053	+		Sama_3324	0.12	+0.8
3,952,169	+		Sama_3324	0.52	-0.9
3,952,169	+		Sama_3324	0.52	+0.4
3,952,169	+		Sama_3324	0.52	-3.2
3,952,170	-		Sama_3324	0.53	+1.3
3,952,174	+		Sama_3324	0.54	-2.5
3,952,174	+		Sama_3324	0.54	-0.6
3,952,175	-		Sama_3324	0.54	-0.2
3,952,175	-		Sama_3324	0.54	+0.4
3,952,175	-		Sama_3324	0.54	-2.1
3,952,256	+		Sama_3324	0.83	+2.9
3,952,256	+		Sama_3324	0.83	-1.5
3,952,256	+		Sama_3324	0.83	-1.0
3,952,257	-		Sama_3324	0.83	-1.1
3,952,302	+				+1.2
3,952,303	-				+1.3
3,952,303	-				+4.4
3,952,352	+				+2.2
3,952,357	+				-1.1
3,952,421	+				-0.3
3,952,421	+				-1.4
3,952,422	-				-0.3
3,952,512	-		Sama_3325	0.16	-1.6
3,952,538	+		Sama_3325	0.20	-1.5
3,952,539	-		Sama_3325	0.20	-2.9
3,952,539	-		Sama_3325	0.20	+2.8
3,952,554	+		Sama_3325	0.22	-1.7
3,952,555	-		Sama_3325	0.22	-2.2
3,952,597	+		Sama_3325	0.27	+3.6
3,952,597	+		Sama_3325	0.27	+0.8
3,952,597	+		Sama_3325	0.27	-0.1
3,952,598	-		Sama_3325	0.27	+0.0
3,952,630	+		Sama_3325	0.31	-1.0
3,952,631	-		Sama_3325	0.31	+4.2
3,952,631	-		Sama_3325	0.31	-2.0
3,952,654	+		Sama_3325	0.34	-1.3
3,952,654	+		Sama_3325	0.34	-2.5
3,952,718	+		Sama_3325	0.42	-0.9
3,952,719	-		Sama_3325	0.42	-2.2
3,952,719	-		Sama_3325	0.42	-2.4
3,952,719	-		Sama_3325	0.42	-0.2
3,952,719	-		Sama_3325	0.42	+0.1
3,952,797	+		Sama_3325	0.52	-1.2
3,952,798	-		Sama_3325	0.52	+0.9
3,952,798	-		Sama_3325	0.52	+0.4
3,952,798	-		Sama_3325	0.52	+1.3
3,952,798	-		Sama_3325	0.52	-0.3
3,952,798	-		Sama_3325	0.52	-1.0
3,952,798	-		Sama_3325	0.52	+2.1
3,953,074	+		Sama_3325	0.87	-1.9
3,953,074	+		Sama_3325	0.87	+2.0
3,953,074	+		Sama_3325	0.87	-0.7
3,953,074	+		Sama_3325	0.87	+1.9
3,953,075	-		Sama_3325	0.87	-0.0
3,953,075	-		Sama_3325	0.87	-1.1
3,953,075	-		Sama_3325	0.87	-1.1
3,953,075	-		Sama_3325	0.87	-1.2
3,953,075	-		Sama_3325	0.87	-0.1
3,953,075	-		Sama_3325	0.87	+1.4
3,953,075	-		Sama_3325	0.87	+0.9
3,953,078	+		Sama_3325	0.87	+1.1
3,953,078	+		Sama_3325	0.87	-0.6
3,953,078	+		Sama_3325	0.87	-0.8
3,953,078	+		Sama_3325	0.87	+3.3
3,953,078	+		Sama_3325	0.87	-2.0
3,953,078	+		Sama_3325	0.87	-1.2
3,953,078	+		Sama_3325	0.87	+0.8
3,953,078	+		Sama_3325	0.87	-0.8
3,953,078	+		Sama_3325	0.87	+0.3
3,953,078	+		Sama_3325	0.87	-0.8
3,953,078	+		Sama_3325	0.87	-0.2
3,953,078	+		Sama_3325	0.87	-0.7
3,953,079	-		Sama_3325	0.87	-1.1
3,953,079	-		Sama_3325	0.87	+1.5
3,953,079	-		Sama_3325	0.87	+1.8
3,953,079	-		Sama_3325	0.87	-0.2
3,953,079	-		Sama_3325	0.87	+2.1
3,953,079	-		Sama_3325	0.87	-0.8
3,953,079	-		Sama_3325	0.87	+1.5
3,953,079	-		Sama_3325	0.87	+1.0
3,953,079	-		Sama_3325	0.87	+1.0
3,953,079	-		Sama_3325	0.87	+0.1
3,953,079	-		Sama_3325	0.87	-2.1
3,953,091	+		Sama_3325	0.89	-1.1
3,953,092	-		Sama_3325	0.89	-0.7
3,953,092	-		Sama_3325	0.89	-1.1
3,953,092	-		Sama_3325	0.89	-1.0
3,953,092	-		Sama_3325	0.89	-2.0
3,953,092	-		Sama_3325	0.89	-0.6
3,953,131	+				+1.4
3,953,131	+				+0.4
3,953,131	+				-1.9
3,953,131	+				-1.4
3,953,166	+				+0.4
3,953,166	+				-1.0
3,953,167	-				+3.5
3,953,167	-				-2.2
3,953,173	+				-0.6
3,953,173	+				-0.0
3,953,173	+				+1.0
3,953,174	-				+2.7
3,953,174	-				-1.0
3,953,261	-				-0.5
3,953,263	+				-1.2
3,953,264	-				+0.8
3,953,264	-				-0.8
3,953,264	-				-1.0
3,953,266	+				-0.0
3,953,284	+				-0.8
3,953,285	-				+1.5
3,953,285	-				+4.7
3,953,293	+				+0.2
3,953,294	-				+0.3
3,953,294	-				-0.2
3,953,294	-				+0.8
3,953,297	+				-0.5
3,953,297	+				+0.2
3,953,297	+				-1.0
3,953,298	-				-2.6
3,953,298	-				-0.9
3,953,298	-				-0.3
3,953,410	+				+3.8
3,953,411	-				-0.8
3,953,415	+				-0.1
3,953,441	+				+0.8
3,953,442	-				-1.1
3,953,442	-				+0.7
3,953,442	-				-2.1
3,953,518	+		Sama_3326	0.18	-0.5
3,953,518	+		Sama_3326	0.18	-0.3
3,953,518	+		Sama_3326	0.18	+1.0
3,953,518	+		Sama_3326	0.18	+0.4
3,953,518	+		Sama_3326	0.18	+1.7
3,953,518	+		Sama_3326	0.18	+3.1
3,953,519	-		Sama_3326	0.19	-0.4
3,953,519	-		Sama_3326	0.19	-2.8
3,953,608	+		Sama_3326	0.42	+3.0
3,953,653	+		Sama_3326	0.53	-1.8
3,953,653	+		Sama_3326	0.53	-1.1
3,953,653	+		Sama_3326	0.53	+0.0
3,953,653	+		Sama_3326	0.53	-1.6
3,953,653	+		Sama_3326	0.53	+1.7
3,953,653	+		Sama_3326	0.53	-0.9
3,953,654	-		Sama_3326	0.53	+1.4
3,953,654	-		Sama_3326	0.53	+0.1
3,953,654	-		Sama_3326	0.53	-1.0
3,953,654	-		Sama_3326	0.53	-0.4
3,953,654	-		Sama_3326	0.53	-0.6
3,953,695	+		Sama_3326	0.64	-0.4
3,953,696	-		Sama_3326	0.64	+0.5
3,953,727	+		Sama_3326	0.72	+1.1
3,953,728	-		Sama_3326	0.72	-0.5
3,953,728	-		Sama_3326	0.72	+0.3
3,953,728	-		Sama_3326	0.72	-0.9
3,953,728	-		Sama_3326	0.72	-0.7
3,953,728	-		Sama_3326	0.72	+1.0
3,953,728	-		Sama_3326	0.72	-0.2
3,953,728	-		Sama_3326	0.72	-0.2
3,953,833	+				-1.4
3,953,834	-				+0.7
3,953,834	-				+0.5
3,953,910	-				+0.4
3,953,943	-				-1.2
3,953,943	-				-1.8
3,953,951	-				-0.9
3,953,991	+				-0.9
3,953,991	+				+0.6
3,953,991	+				-3.1
3,953,991	+				+0.8
3,953,992	-				-0.8
3,953,992	-				-1.5
3,953,992	-				-2.4
3,953,992	-				-1.4
3,954,000	+				-0.6
3,954,000	+				-0.5
3,954,000	+				-0.6
3,954,123	+		Sama_3327	0.24	-1.8
3,954,123	+		Sama_3327	0.24	+1.2
3,954,124	-		Sama_3327	0.24	+0.8
3,954,124	-		Sama_3327	0.24	-0.0
3,954,124	-		Sama_3327	0.24	-3.3
3,954,124	-		Sama_3327	0.24	+0.5
3,954,124	-		Sama_3327	0.24	+1.6
3,954,125	+		Sama_3327	0.25	+0.1
3,954,126	-		Sama_3327	0.25	-1.5
3,954,126	-		Sama_3327	0.25	-1.7
3,954,126	-		Sama_3327	0.25	-1.7
3,954,126	-		Sama_3327	0.25	-0.3
3,954,126	-		Sama_3327	0.25	-0.7
3,954,134	+		Sama_3327	0.26	-2.1
3,954,135	-		Sama_3327	0.26	+1.8
3,954,168	+		Sama_3327	0.30	+0.4