Strain Fitness in Shewanella amazonensis SB2B around Sama_3320

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,948,400	-		Sama_3318	0.59	+1.1
3,948,425	+		Sama_3318	0.61	+0.3
3,948,443	+		Sama_3318	0.62	+0.1
3,948,443	+		Sama_3318	0.62	+4.3
3,948,502	+		Sama_3318	0.66	-1.4
3,948,502	+		Sama_3318	0.66	-1.8
3,948,502	+		Sama_3318	0.66	-0.5
3,948,502	+		Sama_3318	0.66	+2.3
3,948,503	-		Sama_3318	0.66	-0.1
3,948,503	-		Sama_3318	0.66	-0.9
3,948,537	+		Sama_3318	0.68	-0.3
3,948,537	+		Sama_3318	0.68	+0.4
3,948,538	-		Sama_3318	0.68	+0.1
3,948,538	-		Sama_3318	0.68	-0.6
3,948,538	-		Sama_3318	0.68	+2.8
3,948,565	+		Sama_3318	0.70	+1.0
3,948,565	+		Sama_3318	0.70	+0.8
3,948,565	+		Sama_3318	0.70	+1.0
3,948,565	+		Sama_3318	0.70	+0.5
3,948,565	+		Sama_3318	0.70	-0.9
3,948,565	+		Sama_3318	0.70	-0.7
3,948,566	-		Sama_3318	0.70	-1.2
3,948,566	-		Sama_3318	0.70	-1.9
3,948,566	-		Sama_3318	0.70	-2.3
3,948,566	-		Sama_3318	0.70	+0.4
3,948,566	-		Sama_3318	0.70	+3.0
3,948,566	-		Sama_3318	0.70	+0.1
3,948,566	-		Sama_3318	0.70	-0.9
3,948,566	-		Sama_3318	0.70	+1.9
3,948,592	+		Sama_3318	0.72	-1.0
3,948,605	+		Sama_3318	0.73	+1.0
3,948,606	-		Sama_3318	0.73	-1.9
3,948,644	+		Sama_3318	0.75	-2.8
3,948,644	+		Sama_3318	0.75	-0.4
3,948,644	+		Sama_3318	0.75	+0.2
3,948,645	-		Sama_3318	0.75	+1.3
3,948,681	-		Sama_3318	0.78	+0.1
3,948,774	+		Sama_3318	0.84	-3.2
3,948,775	-		Sama_3318	0.84	+0.6
3,948,775	-		Sama_3318	0.84	-0.6
3,948,838	+		Sama_3318	0.88	+1.5
3,948,839	-		Sama_3318	0.88	+2.8
3,948,858	-		Sama_3318	0.89	-1.1
3,948,860	+		Sama_3318	0.90	+4.3
3,948,860	+		Sama_3318	0.90	-2.5
3,948,860	+		Sama_3318	0.90	+4.7
3,948,860	+		Sama_3318	0.90	+3.6
3,948,860	+		Sama_3318	0.90	+1.6
3,948,860	+		Sama_3318	0.90	-0.1
3,948,860	+		Sama_3318	0.90	-0.3
3,948,860	+		Sama_3318	0.90	-0.2
3,948,860	+		Sama_3318	0.90	-1.8
3,948,860	+		Sama_3318	0.90	+0.4
3,948,860	+		Sama_3318	0.90	+0.5
3,948,860	+		Sama_3318	0.90	-0.1
3,948,860	+		Sama_3318	0.90	-1.1
3,948,861	-		Sama_3318	0.90	+3.7
3,948,861	-		Sama_3318	0.90	+2.7
3,948,861	-		Sama_3318	0.90	-0.8
3,948,861	-		Sama_3318	0.90	-1.2
3,948,861	-		Sama_3318	0.90	+0.4
3,948,861	-		Sama_3318	0.90	+3.4
3,948,861	-		Sama_3318	0.90	-0.6
3,948,865	-		Sama_3318	0.90	-0.7
3,948,865	-		Sama_3318	0.90	+3.8
3,948,865	-		Sama_3318	0.90	+2.5
3,948,868	+				+2.0
3,948,869	-				-0.4
3,948,872	+				-2.2
3,948,872	+				+0.2
3,948,872	+				+2.4
3,948,872	+				+1.3
3,948,872	+				+1.2
3,948,872	+				+1.5
3,948,873	-				-1.4
3,948,873	-				+0.6
3,948,873	-				-1.9
3,948,873	-				-0.6
3,948,873	-				-2.2
3,948,873	-				-0.5
3,948,941	+				-0.1
3,948,941	+				-0.2
3,948,941	+				-0.4
3,948,941	+				+2.1
3,948,941	+				-1.5
3,948,941	+				-1.5
3,948,942	-				+0.1
3,948,942	-				+0.9
3,948,978	+				-1.2
3,948,980	+				+2.2
3,948,981	+				-1.2
3,948,981	+				-0.3
3,948,982	-				-1.0
3,948,982	-				+0.7
3,948,982	-				+2.5
3,948,992	+				-1.2
3,948,993	-				+0.1
3,948,993	-				-3.2
3,949,048	+				+0.2
3,949,064	+				-2.4
3,949,065	-				-0.2
3,949,118	+				+2.7
3,949,119	-				+0.1
3,949,119	-				-1.1
3,949,119	-				-0.8
3,949,121	+				+0.7
3,949,121	+				-2.1
3,949,121	+				+1.4
3,949,121	+				-0.5
3,949,121	+				-2.8
3,949,122	-				+0.7
3,949,128	-				+0.0
3,949,205	+				+1.1
3,949,205	+				+3.7
3,949,205	+				-0.9
3,949,206	-				+0.1
3,949,323	+		Sama_3319	0.64	-0.6
3,949,323	+		Sama_3319	0.64	-0.2
3,949,323	+		Sama_3319	0.64	+0.1
3,949,324	-		Sama_3319	0.65	+0.3
3,949,324	-		Sama_3319	0.65	-0.1
3,949,324	-		Sama_3319	0.65	-0.1
3,949,324	-		Sama_3319	0.65	+1.4
3,949,398	+				+0.3
3,949,398	+				-0.6
3,949,398	+				-2.0
3,949,398	+				+0.8
3,949,398	+				-1.9
3,949,399	-				-0.4
3,949,399	-				+0.7
3,949,399	-				-0.5
3,949,399	-				-1.0
3,949,399	-				-0.9
3,949,433	+		Sama_3320	0.13	-0.7
3,949,433	+		Sama_3320	0.13	-0.5
3,949,433	+		Sama_3320	0.13	-2.2
3,949,433	+		Sama_3320	0.13	+1.8
3,949,433	+		Sama_3320	0.13	+4.0
3,949,434	-		Sama_3320	0.14	-0.0
3,949,434	-		Sama_3320	0.14	+3.5
3,949,434	-		Sama_3320	0.14	-1.9
3,949,434	-		Sama_3320	0.14	-3.0
3,949,434	-		Sama_3320	0.14	+1.8
3,949,436	+		Sama_3320	0.14	+0.8
3,949,436	+		Sama_3320	0.14	+2.4
3,949,436	+		Sama_3320	0.14	-1.5
3,949,466	-		Sama_3320	0.27	-2.8
3,949,593	+		Sama_3320	0.78	-0.1
3,949,593	+		Sama_3320	0.78	+1.0
3,949,593	+		Sama_3320	0.78	+0.9
3,949,593	+		Sama_3320	0.78	+1.1
3,949,593	+		Sama_3320	0.78	-0.7
3,949,593	+		Sama_3320	0.78	-0.7
3,949,593	+		Sama_3320	0.78	-0.9
3,949,593	+		Sama_3320	0.78	+3.4
3,949,593	+		Sama_3320	0.78	-0.6
3,949,594	-		Sama_3320	0.78	-0.3
3,949,594	-		Sama_3320	0.78	-0.1
3,949,594	-		Sama_3320	0.78	-0.2
3,949,594	-		Sama_3320	0.78	+0.2
3,949,594	-		Sama_3320	0.78	+0.2
3,949,594	-		Sama_3320	0.78	-0.6
3,949,594	-		Sama_3320	0.78	-2.3
3,949,594	-		Sama_3320	0.78	+0.0
3,949,594	-		Sama_3320	0.78	+2.7
3,949,594	-		Sama_3320	0.78	+3.3
3,949,626	-				+0.6
3,949,633	+				-0.8
3,949,633	+				-0.1
3,949,639	+				+0.1
3,949,639	+				+0.1
3,949,640	-				-2.4
3,949,640	-				-0.7
3,949,690	-				-2.3
3,949,723	-				-1.7
3,949,726	+				-0.5
3,949,726	+				+2.5
3,949,726	+				-2.6
3,949,726	+				+1.4
3,949,726	+				-1.1
3,949,739	+				-1.6
3,949,739	+				-0.7
3,949,758	+				-1.0
3,949,758	+				-1.7
3,949,805	+				+0.4
3,949,805	+				-1.9
3,949,805	+				+0.8
3,949,825	+				-0.3
3,950,022	-				-2.9
3,950,022	-				-0.4
3,950,049	-				-1.0
3,950,071	+		Sama_3321	0.12	-1.5
3,950,072	-		Sama_3321	0.12	-2.4
3,950,072	-		Sama_3321	0.12	-3.5
3,950,072	-		Sama_3321	0.12	-0.1
3,950,078	+		Sama_3321	0.13	+0.3
3,950,078	+		Sama_3321	0.13	+0.5
3,950,078	+		Sama_3321	0.13	+0.4
3,950,079	-		Sama_3321	0.13	+0.6
3,950,079	-		Sama_3321	0.13	+0.4
3,950,079	-		Sama_3321	0.13	-0.5
3,950,079	-		Sama_3321	0.13	-1.3
3,950,166	+		Sama_3321	0.27	-1.0
3,950,167	-		Sama_3321	0.27	+0.2
3,950,167	-		Sama_3321	0.27	-0.4
3,950,167	-		Sama_3321	0.27	-1.7
3,950,167	-		Sama_3321	0.27	-0.4
3,950,167	-		Sama_3321	0.27	+1.4
3,950,450	+		Sama_3321	0.73	-1.2
3,950,451	-		Sama_3321	0.73	-1.2
3,950,451	-		Sama_3321	0.73	+2.4
3,950,465	+		Sama_3321	0.76	+3.7
3,950,466	-		Sama_3321	0.76	+1.1
3,950,528	+		Sama_3321	0.86	+1.9
3,950,528	+		Sama_3321	0.86	+1.7
3,950,528	+		Sama_3321	0.86	-1.5
3,950,529	-		Sama_3321	0.86	-2.0
3,950,529	-		Sama_3321	0.86	+0.6
3,950,616	+				+3.0
3,950,617	-				-2.7
3,950,617	-				-1.7
3,950,628	+				-1.5
3,950,629	-				+1.4