Strain Fitness in Shewanella amazonensis SB2B around Sama_2899

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,446,143	+		Sama_2898	0.54	-1.6
3,446,269	+		Sama_2898	0.64	-1.9
3,446,269	+		Sama_2898	0.64	-1.8
3,446,281	+		Sama_2898	0.65	-0.4
3,446,282	-		Sama_2898	0.65	-2.2
3,446,291	+		Sama_2898	0.66	+0.1
3,446,291	+		Sama_2898	0.66	-1.4
3,446,292	-		Sama_2898	0.66	+0.2
3,446,292	-		Sama_2898	0.66	+1.2
3,446,292	-		Sama_2898	0.66	-0.1
3,446,292	-		Sama_2898	0.66	-0.2
3,446,296	+		Sama_2898	0.66	-0.8
3,446,296	+		Sama_2898	0.66	-1.1
3,446,296	+		Sama_2898	0.66	+0.1
3,446,338	+		Sama_2898	0.70	+0.6
3,446,338	+		Sama_2898	0.70	-0.2
3,446,339	-		Sama_2898	0.70	-0.1
3,446,384	+		Sama_2898	0.73	+1.1
3,446,384	+		Sama_2898	0.73	-0.8
3,446,385	-		Sama_2898	0.73	-0.8
3,446,385	-		Sama_2898	0.73	+1.3
3,446,385	-		Sama_2898	0.73	-0.6
3,446,385	-		Sama_2898	0.73	-0.6
3,446,430	-		Sama_2898	0.77	+0.4
3,446,454	+		Sama_2898	0.79	-2.5
3,446,454	+		Sama_2898	0.79	-2.1
3,446,455	-		Sama_2898	0.79	+1.8
3,446,455	-		Sama_2898	0.79	-0.5
3,446,455	-		Sama_2898	0.79	+0.5
3,446,505	+		Sama_2898	0.83	+0.9
3,446,566	+		Sama_2898	0.87	-2.8
3,446,570	+		Sama_2898	0.88	+0.6
3,446,571	-		Sama_2898	0.88	+0.2
3,446,577	-		Sama_2898	0.88	-0.6
3,446,635	+				-1.5
3,446,715	+				-1.4
3,446,715	+				-0.5
3,446,715	+				-0.9
3,446,715	+				+1.2
3,446,715	+				-0.0
3,446,715	+				+3.5
3,446,761	-				-0.3
3,446,762	+				+2.7
3,446,762	+				-1.0
3,446,763	-				+0.0
3,446,763	-				-0.4
3,446,769	+				-1.5
3,446,769	+				-0.6
3,446,770	-				+0.4
3,446,770	-				-1.2
3,446,838	+				+3.2
3,446,838	+				-3.0
3,446,839	-				+2.2
3,446,839	-				-1.5
3,446,839	-				+0.3
3,446,839	-				-2.8
3,446,839	-				-1.0
3,446,854	+				-1.4
3,446,854	+				+4.5
3,446,895	-				-1.1
3,446,911	-				-1.3
3,446,911	-				+1.4
3,446,972	+				+0.0
3,446,973	-				-1.5
3,446,973	-				+0.8
3,446,991	+				+3.7
3,447,000	-				-1.8
3,447,031	-				+5.1
3,447,031	-				-0.3
3,447,086	+				+0.4
3,447,086	+				+0.8
3,447,087	-				-0.6
3,447,099	+				+0.1
3,447,099	+				+0.4
3,447,099	+				-2.1
3,447,099	+				-1.2
3,447,100	-				-1.8
3,447,121	+				+0.4
3,447,153	+				+1.8
3,447,154	-				+0.4
3,447,154	-				-2.0
3,447,159	-				-0.4
3,447,192	-				-1.5
3,447,192	-				-1.7
3,447,192	-				+1.0
3,447,304	-		Sama_2899	0.18	+4.2
3,447,326	-		Sama_2899	0.20	-0.1
3,447,339	+		Sama_2899	0.22	+1.7
3,447,339	+		Sama_2899	0.22	-1.5
3,447,339	+		Sama_2899	0.22	-0.4
3,447,339	+		Sama_2899	0.22	-0.0
3,447,358	+		Sama_2899	0.24	+0.4
3,447,358	+		Sama_2899	0.24	-0.3
3,447,369	+		Sama_2899	0.25	-1.9
3,447,369	+		Sama_2899	0.25	+1.1
3,447,370	-		Sama_2899	0.25	-0.8
3,447,370	-		Sama_2899	0.25	-0.2
3,447,379	+		Sama_2899	0.26	-0.4
3,447,394	+		Sama_2899	0.27	+0.2
3,447,394	+		Sama_2899	0.27	-0.0
3,447,394	+		Sama_2899	0.27	-0.8
3,447,395	-		Sama_2899	0.27	-0.4
3,447,395	-		Sama_2899	0.27	-1.3
3,447,395	-		Sama_2899	0.27	+0.1
3,447,395	-		Sama_2899	0.27	-2.3
3,447,415	-		Sama_2899	0.29	-0.8
3,447,435	+		Sama_2899	0.31	+0.5
3,447,435	+		Sama_2899	0.31	-0.8
3,447,435	+		Sama_2899	0.31	-1.4
3,447,435	+		Sama_2899	0.31	-0.5
3,447,435	+		Sama_2899	0.31	+0.8
3,447,435	+		Sama_2899	0.31	+3.3
3,447,436	-		Sama_2899	0.32	+4.1
3,447,436	-		Sama_2899	0.32	-0.6
3,447,436	-		Sama_2899	0.32	-0.8
3,447,436	-		Sama_2899	0.32	+3.4
3,447,436	-		Sama_2899	0.32	+2.6
3,447,473	+		Sama_2899	0.35	-0.7
3,447,474	-		Sama_2899	0.35	+1.3
3,447,474	-		Sama_2899	0.35	-1.6
3,447,474	-		Sama_2899	0.35	-1.3
3,447,474	-		Sama_2899	0.35	+1.8
3,447,509	+		Sama_2899	0.39	+3.6
3,447,509	+		Sama_2899	0.39	-0.9
3,447,509	+		Sama_2899	0.39	-0.3
3,447,509	+		Sama_2899	0.39	-1.4
3,447,509	+		Sama_2899	0.39	+0.3
3,447,509	+		Sama_2899	0.39	-1.1
3,447,510	-		Sama_2899	0.39	-1.1
3,447,510	-		Sama_2899	0.39	-1.5
3,447,512	+		Sama_2899	0.39	+0.2
3,447,512	+		Sama_2899	0.39	-2.2
3,447,513	-		Sama_2899	0.39	+0.7
3,447,513	-		Sama_2899	0.39	-2.5
3,447,572	+		Sama_2899	0.45	-0.8
3,447,573	-		Sama_2899	0.45	+0.7
3,447,590	+		Sama_2899	0.47	+1.0
3,447,590	+		Sama_2899	0.47	-0.4
3,447,591	-		Sama_2899	0.47	+2.3
3,447,591	-		Sama_2899	0.47	+0.1
3,447,591	-		Sama_2899	0.47	+0.2
3,447,591	-		Sama_2899	0.47	-0.5
3,447,615	-		Sama_2899	0.50	+0.5
3,447,615	-		Sama_2899	0.50	+4.2
3,447,615	-		Sama_2899	0.50	-0.1
3,447,626	+		Sama_2899	0.51	+3.5
3,447,665	+		Sama_2899	0.55	+1.3
3,447,665	+		Sama_2899	0.55	+0.6
3,447,665	+		Sama_2899	0.55	-1.9
3,447,665	+		Sama_2899	0.55	-2.8
3,447,670	+		Sama_2899	0.55	-0.8
3,447,670	+		Sama_2899	0.55	-0.1
3,447,671	-		Sama_2899	0.55	-1.6
3,447,689	-		Sama_2899	0.57	-0.8
3,447,701	+		Sama_2899	0.58	+1.7
3,447,701	+		Sama_2899	0.58	+1.4
3,447,701	+		Sama_2899	0.58	-0.3
3,447,701	+		Sama_2899	0.58	-1.0
3,447,701	+		Sama_2899	0.58	+1.8
3,447,701	+		Sama_2899	0.58	-1.3
3,447,702	-		Sama_2899	0.59	+0.2
3,447,702	-		Sama_2899	0.59	-1.3
3,447,702	-		Sama_2899	0.59	+0.7
3,447,702	-		Sama_2899	0.59	+0.4
3,447,705	+		Sama_2899	0.59	+1.8
3,447,705	+		Sama_2899	0.59	+3.3
3,447,705	+		Sama_2899	0.59	+1.0
3,447,705	+		Sama_2899	0.59	-1.2
3,447,706	-		Sama_2899	0.59	-1.8
3,447,706	-		Sama_2899	0.59	-1.7
3,447,706	-		Sama_2899	0.59	-2.5
3,447,706	-		Sama_2899	0.59	+0.2
3,447,721	+		Sama_2899	0.60	+0.2
3,447,722	-		Sama_2899	0.61	-0.0
3,447,722	-		Sama_2899	0.61	-1.1
3,447,733	+		Sama_2899	0.62	-2.3
3,447,733	+		Sama_2899	0.62	+1.3
3,447,733	+		Sama_2899	0.62	-0.2
3,447,733	+		Sama_2899	0.62	-1.6
3,447,734	-		Sama_2899	0.62	-2.6
3,447,734	-		Sama_2899	0.62	-0.7
3,447,734	-		Sama_2899	0.62	-1.6
3,447,758	-		Sama_2899	0.64	-0.0
3,447,766	-		Sama_2899	0.65	-0.5
3,447,782	+		Sama_2899	0.67	+0.8
3,447,782	+		Sama_2899	0.67	-1.1
3,447,888	+		Sama_2899	0.77	+1.6
3,447,888	+		Sama_2899	0.77	-0.1
3,447,889	-		Sama_2899	0.78	+3.6
3,447,916	-		Sama_2899	0.80	-1.9
3,447,916	-		Sama_2899	0.80	-0.1
3,447,916	-		Sama_2899	0.80	-1.2
3,447,916	-		Sama_2899	0.80	-0.5
3,447,916	-		Sama_2899	0.80	-1.7
3,447,970	-		Sama_2899	0.86	-0.6
3,447,970	-		Sama_2899	0.86	+0.4
3,447,970	-		Sama_2899	0.86	-1.8
3,447,970	-		Sama_2899	0.86	-0.1
3,447,972	+		Sama_2899	0.86	+0.1
3,447,972	+		Sama_2899	0.86	-2.6
3,448,209	+				+5.0
3,448,209	+				-0.7
3,448,209	+				-0.5
3,448,210	-				+0.6
3,448,219	+				-0.7
3,448,219	+				+0.2
3,448,220	-				-0.2
3,448,220	-				-1.8
3,448,275	+				-0.2
3,448,275	+				-2.4
3,448,275	+				-0.3
3,448,276	-				-2.3
3,448,276	-				-0.2
3,448,276	-				+0.1
3,448,277	+				+3.4
3,448,277	+				+0.4
3,448,277	+				+0.2
3,448,277	+				-2.9
3,448,277	+				-0.8
3,448,277	+				+2.6
3,448,277	+				-2.4
3,448,277	+				+3.4
3,448,278	-				+1.7
3,448,278	-				+2.9
3,448,278	-				+0.8
3,448,278	-				+1.4
3,448,278	-				-1.8
3,448,278	-				-0.4
3,448,290	-		Sama_2900	0.10	-2.3
3,448,290	-		Sama_2900	0.10	+0.7
3,448,317	+		Sama_2900	0.13	-0.4
3,448,373	+		Sama_2900	0.19	-1.1
3,448,373	+		Sama_2900	0.19	+1.9
3,448,373	+		Sama_2900	0.19	-2.3
3,448,373	+		Sama_2900	0.19	+3.4
3,448,374	-		Sama_2900	0.19	+1.7
3,448,374	-		Sama_2900	0.19	+1.1
3,448,374	-		Sama_2900	0.19	-1.0
3,448,385	+		Sama_2900	0.20	+0.2
3,448,385	+		Sama_2900	0.20	-0.6
3,448,386	-		Sama_2900	0.20	-1.6
3,448,386	-		Sama_2900	0.20	-0.1
3,448,386	-		Sama_2900	0.20	-0.6
3,448,386	-		Sama_2900	0.20	-0.6
3,448,407	+		Sama_2900	0.22	-1.1
3,448,408	-		Sama_2900	0.22	+0.0
3,448,408	-		Sama_2900	0.22	+1.2
3,448,421	+		Sama_2900	0.24	-1.1
3,448,427	+		Sama_2900	0.24	+0.5
3,448,427	+		Sama_2900	0.24	-1.0
3,448,427	+		Sama_2900	0.24	+2.4
3,448,427	+		Sama_2900	0.24	-0.4
3,448,427	+		Sama_2900	0.24	-0.8
3,448,428	-		Sama_2900	0.25	+0.4
3,448,428	-		Sama_2900	0.25	-1.0
3,448,428	-		Sama_2900	0.25	+0.8
3,448,506	-		Sama_2900	0.33	-0.5
3,448,506	-		Sama_2900	0.33	-2.7
3,448,565	+		Sama_2900	0.39	-3.2
3,448,588	+		Sama_2900	0.41	+0.7
3,448,588	+		Sama_2900	0.41	-1.0
3,448,588	+		Sama_2900	0.41	-0.6
3,448,588	+		Sama_2900	0.41	-0.6
3,448,588	+		Sama_2900	0.41	+0.1
3,448,589	-		Sama_2900	0.41	+5.5
3,448,631	+		Sama_2900	0.45	+1.1
3,448,631	+		Sama_2900	0.45	-3.1
3,448,631	+		Sama_2900	0.45	-1.8
3,448,632	-		Sama_2900	0.45	+1.2
3,448,642	+		Sama_2900	0.46	-0.5
3,448,642	+		Sama_2900	0.46	-1.0
3,448,642	+		Sama_2900	0.46	+1.1
3,448,775	+		Sama_2900	0.60	+3.0
3,448,775	+		Sama_2900	0.60	+0.1
3,448,776	-		Sama_2900	0.60	+0.6
3,448,776	-		Sama_2900	0.60	-1.5
3,448,776	-		Sama_2900	0.60	-0.8
3,448,776	-		Sama_2900	0.60	-3.0
3,448,776	-		Sama_2900	0.60	-2.6
3,448,776	-		Sama_2900	0.60	-1.3
3,448,776	-		Sama_2900	0.60	+1.5
3,448,776	-		Sama_2900	0.60	+0.2
3,448,779	+		Sama_2900	0.61	-0.2
3,448,779	+		Sama_2900	0.61	-2.1
3,448,779	+		Sama_2900	0.61	+1.4
3,448,779	+		Sama_2900	0.61	+1.1
3,448,779	+		Sama_2900	0.61	+0.6
3,448,779	+		Sama_2900	0.61	+2.1
3,448,780	-		Sama_2900	0.61	+3.1
3,448,780	-		Sama_2900	0.61	-0.3
3,448,780	-		Sama_2900	0.61	-0.4
3,448,780	-		Sama_2900	0.61	-0.4
3,448,780	-		Sama_2900	0.61	+1.3
3,448,780	-		Sama_2900	0.61	+1.0
3,448,780	-		Sama_2900	0.61	+0.4
3,448,780	-		Sama_2900	0.61	-1.0
3,448,780	-		Sama_2900	0.61	-0.8
3,448,780	-		Sama_2900	0.61	+2.5
3,448,853	+		Sama_2900	0.68	-1.3
3,448,853	+		Sama_2900	0.68	+2.8
3,448,853	+		Sama_2900	0.68	+0.1
3,448,853	+		Sama_2900	0.68	-0.4
3,448,854	-		Sama_2900	0.68	-0.7
3,448,854	-		Sama_2900	0.68	+0.1
3,448,854	-		Sama_2900	0.68	+0.1
3,448,854	-		Sama_2900	0.68	+2.3
3,448,854	-		Sama_2900	0.68	-0.7
3,448,946	+		Sama_2900	0.78	-1.6
3,448,947	-		Sama_2900	0.78	+0.2
3,448,947	-		Sama_2900	0.78	+0.8
3,448,990	-		Sama_2900	0.82	+0.1
3,449,032	+		Sama_2900	0.86	+4.7
3,449,033	-		Sama_2900	0.87	+0.3
3,449,033	-		Sama_2900	0.87	-2.0
3,449,033	-		Sama_2900	0.87	-0.3
3,449,061	+		Sama_2900	0.89	-0.1
3,449,062	-		Sama_2900	0.90	+1.2