Strain Fitness in Shewanella amazonensis SB2B around Sama_2884

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,423,866	+		Sama_2883	0.23	+0.2
3,423,892	+		Sama_2883	0.25	-0.2
3,423,912	+		Sama_2883	0.27	+1.2
3,423,912	+		Sama_2883	0.27	-2.9
3,423,913	-		Sama_2883	0.27	-1.6
3,423,951	+		Sama_2883	0.30	+2.8
3,423,952	-		Sama_2883	0.30	-1.4
3,423,952	-		Sama_2883	0.30	+1.5
3,423,952	-		Sama_2883	0.30	-0.8
3,424,101	+		Sama_2883	0.42	-1.8
3,424,101	+		Sama_2883	0.42	-2.5
3,424,101	+		Sama_2883	0.42	+2.2
3,424,101	+		Sama_2883	0.42	-2.5
3,424,102	-		Sama_2883	0.42	+2.4
3,424,102	-		Sama_2883	0.42	+1.9
3,424,102	-		Sama_2883	0.42	-0.5
3,424,102	-		Sama_2883	0.42	-1.0
3,424,102	-		Sama_2883	0.42	+0.1
3,424,102	-		Sama_2883	0.42	+1.2
3,424,102	-		Sama_2883	0.42	-0.4
3,424,113	+		Sama_2883	0.43	-1.6
3,424,113	+		Sama_2883	0.43	-1.2
3,424,113	+		Sama_2883	0.43	+2.4
3,424,114	-		Sama_2883	0.43	-0.9
3,424,114	-		Sama_2883	0.43	-1.3
3,424,114	-		Sama_2883	0.43	+2.3
3,424,114	-		Sama_2883	0.43	+0.6
3,424,114	-		Sama_2883	0.43	+2.3
3,424,199	+		Sama_2883	0.50	+1.9
3,424,199	+		Sama_2883	0.50	+4.5
3,424,199	+		Sama_2883	0.50	+3.5
3,424,199	+		Sama_2883	0.50	+0.6
3,424,199	+		Sama_2883	0.50	+0.0
3,424,199	+		Sama_2883	0.50	+3.9
3,424,199	+		Sama_2883	0.50	-0.1
3,424,200	-		Sama_2883	0.50	+0.4
3,424,200	-		Sama_2883	0.50	-2.0
3,424,200	-		Sama_2883	0.50	-1.7
3,424,210	+		Sama_2883	0.51	-0.9
3,424,237	-		Sama_2883	0.53	-0.9
3,424,237	-		Sama_2883	0.53	-0.3
3,424,240	+		Sama_2883	0.53	-0.9
3,424,240	+		Sama_2883	0.53	-0.9
3,424,240	+		Sama_2883	0.53	+0.9
3,424,241	-		Sama_2883	0.53	-2.5
3,424,296	-		Sama_2883	0.58	-1.8
3,424,296	-		Sama_2883	0.58	+0.1
3,424,296	-		Sama_2883	0.58	-2.6
3,424,317	+		Sama_2883	0.60	-0.0
3,424,317	+		Sama_2883	0.60	+1.3
3,424,318	-		Sama_2883	0.60	-1.4
3,424,318	-		Sama_2883	0.60	+0.3
3,424,352	+		Sama_2883	0.62	-0.6
3,424,353	-		Sama_2883	0.62	+2.1
3,424,353	-		Sama_2883	0.62	-1.8
3,424,356	+		Sama_2883	0.63	-0.6
3,424,356	+		Sama_2883	0.63	+1.3
3,424,356	+		Sama_2883	0.63	-0.9
3,424,356	+		Sama_2883	0.63	-1.2
3,424,356	+		Sama_2883	0.63	+0.7
3,424,357	-		Sama_2883	0.63	-1.7
3,424,437	+		Sama_2883	0.69	-1.0
3,424,437	+		Sama_2883	0.69	+0.2
3,424,437	+		Sama_2883	0.69	-0.3
3,424,437	+		Sama_2883	0.69	-0.0
3,424,437	+		Sama_2883	0.69	-0.4
3,424,437	+		Sama_2883	0.69	-0.6
3,424,437	+		Sama_2883	0.69	+0.2
3,424,438	-		Sama_2883	0.69	+0.5
3,424,438	-		Sama_2883	0.69	-1.0
3,424,456	+		Sama_2883	0.71	-0.6
3,424,457	-		Sama_2883	0.71	-1.1
3,424,457	-		Sama_2883	0.71	+1.3
3,424,457	-		Sama_2883	0.71	+2.5
3,424,462	+		Sama_2883	0.71	+0.5
3,424,463	-		Sama_2883	0.71	-0.2
3,424,463	-		Sama_2883	0.71	-2.5
3,424,463	-		Sama_2883	0.71	+1.8
3,424,467	+		Sama_2883	0.72	+3.6
3,424,468	-		Sama_2883	0.72	-0.1
3,424,506	+		Sama_2883	0.75	-0.1
3,424,506	+		Sama_2883	0.75	-0.2
3,424,507	-		Sama_2883	0.75	-0.2
3,424,507	-		Sama_2883	0.75	-0.8
3,424,507	-		Sama_2883	0.75	+1.3
3,424,555	-		Sama_2883	0.79	+2.4
3,424,583	+		Sama_2883	0.81	-0.5
3,424,610	+		Sama_2883	0.83	+0.2
3,424,610	+		Sama_2883	0.83	+0.2
3,424,611	-		Sama_2883	0.83	-1.2
3,424,622	+		Sama_2883	0.84	+4.1
3,424,623	-		Sama_2883	0.84	-1.4
3,424,623	-		Sama_2883	0.84	-0.8
3,424,623	-		Sama_2883	0.84	-0.8
3,424,656	+		Sama_2883	0.87	+1.4
3,424,666	+		Sama_2883	0.88	-1.6
3,424,689	+		Sama_2883	0.90	-0.9
3,424,690	-		Sama_2883	0.90	-0.5
3,424,690	-		Sama_2883	0.90	+2.0
3,424,690	-		Sama_2883	0.90	-0.1
3,424,690	-		Sama_2883	0.90	-0.2
3,424,692	-		Sama_2883	0.90	-2.9
3,424,845	+				-1.6
3,424,845	+				-0.5
3,424,845	+				+0.2
3,424,845	+				-1.0
3,424,846	-				-1.4
3,424,846	-				-1.3
3,424,846	-				-1.8
3,424,846	-				+0.1
3,424,922	+				-0.9
3,424,922	+				-0.7
3,424,923	-				-0.9
3,424,923	-				-2.7
3,424,926	-		Sama_2884	0.10	+2.4
3,424,935	+		Sama_2884	0.11	-1.3
3,424,935	+		Sama_2884	0.11	+3.8
3,424,936	-		Sama_2884	0.11	-1.8
3,424,936	-		Sama_2884	0.11	-0.9
3,424,936	-		Sama_2884	0.11	+0.9
3,424,936	-		Sama_2884	0.11	-1.2
3,424,937	+		Sama_2884	0.11	+1.5
3,424,938	-		Sama_2884	0.12	-0.3
3,425,042	+		Sama_2884	0.24	+0.4
3,425,043	-		Sama_2884	0.24	-1.0
3,425,043	-		Sama_2884	0.24	-2.2
3,425,043	-		Sama_2884	0.24	+1.1
3,425,043	-		Sama_2884	0.24	-0.1
3,425,049	+		Sama_2884	0.25	+0.6
3,425,049	+		Sama_2884	0.25	-1.0
3,425,049	+		Sama_2884	0.25	-0.3
3,425,049	+		Sama_2884	0.25	-1.9
3,425,049	+		Sama_2884	0.25	-0.3
3,425,049	+		Sama_2884	0.25	+1.4
3,425,050	-		Sama_2884	0.25	-2.4
3,425,050	-		Sama_2884	0.25	-1.1
3,425,050	-		Sama_2884	0.25	+0.8
3,425,050	-		Sama_2884	0.25	+2.6
3,425,053	+		Sama_2884	0.25	+1.9
3,425,053	+		Sama_2884	0.25	+0.3
3,425,054	-		Sama_2884	0.25	-0.3
3,425,054	-		Sama_2884	0.25	-1.5
3,425,054	-		Sama_2884	0.25	+0.7
3,425,087	+		Sama_2884	0.29	-0.5
3,425,087	+		Sama_2884	0.29	-1.0
3,425,088	-		Sama_2884	0.29	+2.0
3,425,088	-		Sama_2884	0.29	-2.0
3,425,088	-		Sama_2884	0.29	+0.6
3,425,088	-		Sama_2884	0.29	-0.9
3,425,120	-		Sama_2884	0.33	+0.5
3,425,160	+		Sama_2884	0.38	+1.8
3,425,161	-		Sama_2884	0.38	+1.2
3,425,184	-		Sama_2884	0.41	-1.2
3,425,184	-		Sama_2884	0.41	-3.3
3,425,222	+		Sama_2884	0.45	-1.8
3,425,222	+		Sama_2884	0.45	-1.3
3,425,222	+		Sama_2884	0.45	-0.8
3,425,223	-		Sama_2884	0.45	-1.2
3,425,223	-		Sama_2884	0.45	-1.4
3,425,223	-		Sama_2884	0.45	-3.3
3,425,223	-		Sama_2884	0.45	-0.2
3,425,240	+		Sama_2884	0.47	-1.0
3,425,241	-		Sama_2884	0.47	-0.5
3,425,241	-		Sama_2884	0.47	-0.0
3,425,357	+		Sama_2884	0.61	-1.0
3,425,357	+		Sama_2884	0.61	+0.7
3,425,358	-		Sama_2884	0.61	-0.1
3,425,358	-		Sama_2884	0.61	+0.2
3,425,358	-		Sama_2884	0.61	+0.1
3,425,373	+		Sama_2884	0.63	-1.8
3,425,374	-		Sama_2884	0.63	-0.5
3,425,374	-		Sama_2884	0.63	+0.8
3,425,388	+		Sama_2884	0.65	+0.1
3,425,389	-		Sama_2884	0.65	-0.4
3,425,399	+		Sama_2884	0.66	+1.1
3,425,420	-		Sama_2884	0.69	-1.7
3,425,453	+		Sama_2884	0.72	-1.7
3,425,453	+		Sama_2884	0.72	-0.3
3,425,454	-		Sama_2884	0.73	-0.5
3,425,513	+		Sama_2884	0.80	+1.3
3,425,513	+		Sama_2884	0.80	+1.5
3,425,514	-		Sama_2884	0.80	-1.2
3,425,532	+		Sama_2884	0.82	-1.7
3,425,532	+		Sama_2884	0.82	-1.0
3,425,532	+		Sama_2884	0.82	+4.5
3,425,569	+		Sama_2884	0.86	-0.3
3,425,569	+		Sama_2884	0.86	-1.3
3,425,569	+		Sama_2884	0.86	-2.1
3,425,569	+		Sama_2884	0.86	-0.9
3,425,570	-		Sama_2884	0.86	-0.7
3,425,570	-		Sama_2884	0.86	+0.4
3,425,570	-		Sama_2884	0.86	+0.1
3,425,612	+				+1.3
3,425,773	-				-1.5
3,425,793	+				-1.6
3,425,793	+				-0.2
3,425,793	+				+0.8
3,425,794	-				+0.4
3,425,794	-				-1.0
3,425,794	-				+0.1
3,425,794	-				+0.9
3,425,794	-				-1.6
3,425,795	+				-0.3
3,425,796	-				-2.5
3,425,796	-				-0.6
3,425,796	-				-1.0
3,425,796	-				-0.5
3,425,812	-				-1.8
3,425,835	+				-0.0
3,425,838	+				-0.9
3,425,838	+				+1.6
3,425,838	+				+2.1
3,425,938	+		Sama_2885	0.39	+0.2
3,425,939	-		Sama_2885	0.40	-0.7
3,425,939	-		Sama_2885	0.40	-0.6
3,425,948	+		Sama_2885	0.45	-2.2
3,425,948	+		Sama_2885	0.45	-1.6
3,425,948	+		Sama_2885	0.45	-1.8
3,425,949	-		Sama_2885	0.45	-0.6
3,425,949	-		Sama_2885	0.45	-0.8
3,425,949	-		Sama_2885	0.45	-1.1
3,425,949	-		Sama_2885	0.45	-0.9
3,425,949	-		Sama_2885	0.45	-1.7
3,425,949	-		Sama_2885	0.45	-2.2
3,426,058	+				+0.9
3,426,058	+				+0.2
3,426,059	-				-2.1
3,426,059	-				+0.5
3,426,059	-				+1.4
3,426,062	-				+0.0
3,426,070	-				-0.6
3,426,084	-				+3.4
3,426,084	-				-1.3
3,426,084	-				+1.8
3,426,084	-				-0.4
3,426,084	-				-1.0
3,426,084	-				-1.3
3,426,113	+				-1.7
3,426,114	-				-1.4
3,426,114	-				+1.8
3,426,132	+				+0.7
3,426,133	-				+0.6
3,426,133	-				-1.5
3,426,133	-				+0.5
3,426,133	-				+1.1
3,426,147	-				+0.5
3,426,164	+				-1.8
3,426,164	+				+0.5
3,426,165	-				-0.8
3,426,165	-				+1.1
3,426,165	-				+0.1
3,426,167	+				-0.6
3,426,168	-				-0.1
3,426,173	+				+0.7
3,426,197	+				-1.1
3,426,203	+				+1.0
3,426,203	+				-1.8
3,426,203	+				-2.5
3,426,203	+				-0.8
3,426,316	-				+3.5
3,426,341	+				+0.5
3,426,343	+				+3.6
3,426,343	+				-2.8
3,426,344	-				+0.4
3,426,344	-				+0.6
3,426,379	-				-1.0
3,426,379	-				-0.1
3,426,390	+				-2.8
3,426,423	-				-1.3
3,426,430	+				-0.3
3,426,431	-				-1.8
3,426,431	-				+1.0
3,426,431	-				-0.2
3,426,433	+				-0.8
3,426,433	+				-1.9
3,426,434	-				-1.9
3,426,458	-				+2.6
3,426,485	+				-1.5
3,426,486	-				-0.5
3,426,486	-				+6.8
3,426,492	-				+1.1
3,426,498	-				+0.3
3,426,515	+				-0.5
3,426,515	+				-1.5
3,426,516	-				+0.7
3,426,516	-				+0.4
3,426,516	-				+0.4
3,426,519	+				+1.5
3,426,519	+				+0.9
3,426,519	+				-0.6
3,426,520	-				-1.2
3,426,520	-				-1.7
3,426,520	-				-1.6
3,426,520	-				+3.0
3,426,520	-				+3.2
3,426,520	-				+1.2
3,426,522	-				+0.0
3,426,522	-				+3.6
3,426,537	-				-1.1
3,426,660	-				+1.5
3,426,662	+				-0.8
3,426,662	+				-0.6
3,426,662	+				-1.9
3,426,662	+				+3.0
3,426,685	+				+0.1