Strain Fitness in Shewanella amazonensis SB2B around Sama_2863

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,400,555	+		Sama_2862	0.25	+0.7
3,400,555	+		Sama_2862	0.25	+0.5
3,400,555	+		Sama_2862	0.25	-0.8
3,400,570	+		Sama_2862	0.26	-0.7
3,400,571	-		Sama_2862	0.26	+4.0
3,400,571	-		Sama_2862	0.26	+0.2
3,400,571	-		Sama_2862	0.26	-1.0
3,400,610	+		Sama_2862	0.29	+1.0
3,400,610	+		Sama_2862	0.29	-0.8
3,400,610	+		Sama_2862	0.29	-2.0
3,400,610	+		Sama_2862	0.29	+1.2
3,400,610	+		Sama_2862	0.29	+0.9
3,400,611	-		Sama_2862	0.29	-2.7
3,400,615	+		Sama_2862	0.29	-0.4
3,400,615	+		Sama_2862	0.29	-1.9
3,400,615	+		Sama_2862	0.29	-1.2
3,400,615	+		Sama_2862	0.29	-1.6
3,400,615	+		Sama_2862	0.29	+2.0
3,400,615	+		Sama_2862	0.29	-1.8
3,400,615	+		Sama_2862	0.29	+2.0
3,400,615	+		Sama_2862	0.29	-0.5
3,400,615	+		Sama_2862	0.29	+4.6
3,400,616	-		Sama_2862	0.30	-1.5
3,400,616	-		Sama_2862	0.30	-1.2
3,400,616	-		Sama_2862	0.30	+0.6
3,400,616	-		Sama_2862	0.30	-0.2
3,400,616	-		Sama_2862	0.30	+1.5
3,400,621	+		Sama_2862	0.30	+0.1
3,400,621	+		Sama_2862	0.30	+2.3
3,400,621	+		Sama_2862	0.30	-0.6
3,400,621	+		Sama_2862	0.30	-0.7
3,400,621	+		Sama_2862	0.30	-1.0
3,400,621	+		Sama_2862	0.30	+1.6
3,400,621	+		Sama_2862	0.30	-0.1
3,400,622	-		Sama_2862	0.30	+0.7
3,400,622	-		Sama_2862	0.30	+4.5
3,400,654	-		Sama_2862	0.33	-1.5
3,400,654	-		Sama_2862	0.33	+2.7
3,400,733	-		Sama_2862	0.39	-0.4
3,400,780	+		Sama_2862	0.43	-0.3
3,400,780	+		Sama_2862	0.43	-1.7
3,400,780	+		Sama_2862	0.43	+0.3
3,400,780	+		Sama_2862	0.43	-2.3
3,400,780	+		Sama_2862	0.43	+0.1
3,400,780	+		Sama_2862	0.43	-1.9
3,400,780	+		Sama_2862	0.43	+0.0
3,400,780	+		Sama_2862	0.43	-1.3
3,400,780	+		Sama_2862	0.43	+0.1
3,400,781	-		Sama_2862	0.43	+4.2
3,400,781	-		Sama_2862	0.43	-1.4
3,400,781	-		Sama_2862	0.43	+3.6
3,400,781	-		Sama_2862	0.43	-0.1
3,400,781	-		Sama_2862	0.43	-1.1
3,400,781	-		Sama_2862	0.43	-2.1
3,400,781	-		Sama_2862	0.43	-1.1
3,400,781	-		Sama_2862	0.43	+1.5
3,400,782	+		Sama_2862	0.43	+1.9
3,400,783	-		Sama_2862	0.43	-1.3
3,400,783	-		Sama_2862	0.43	+2.5
3,400,917	+		Sama_2862	0.54	-2.1
3,400,928	-		Sama_2862	0.55	-2.7
3,400,928	-		Sama_2862	0.55	-1.2
3,400,928	-		Sama_2862	0.55	-0.9
3,400,928	-		Sama_2862	0.55	-0.9
3,401,021	+		Sama_2862	0.63	-0.9
3,401,021	+		Sama_2862	0.63	+4.5
3,401,022	-		Sama_2862	0.63	+5.4
3,401,097	+		Sama_2862	0.69	+0.8
3,401,115	-		Sama_2862	0.71	-1.5
3,401,132	-		Sama_2862	0.72	+2.4
3,401,188	+		Sama_2862	0.77	+0.8
3,401,188	+		Sama_2862	0.77	-1.1
3,401,188	+		Sama_2862	0.77	-1.7
3,401,189	-		Sama_2862	0.77	-1.0
3,401,189	-		Sama_2862	0.77	+1.6
3,401,189	-		Sama_2862	0.77	+0.3
3,401,225	-		Sama_2862	0.80	-0.2
3,401,321	-		Sama_2862	0.87	+1.1
3,401,321	-		Sama_2862	0.87	+0.1
3,401,321	-		Sama_2862	0.87	-0.2
3,401,362	+				+3.8
3,401,363	-				+1.7
3,401,363	-				-0.9
3,401,363	-				+5.2
3,401,396	+				+0.4
3,401,396	+				-0.9
3,401,397	-				+0.7
3,401,397	-				-1.1
3,401,397	-				+1.9
3,401,397	-				+1.0
3,401,397	-				+0.0
3,401,397	-				-1.6
3,401,397	-				+0.7
3,401,397	-				-0.2
3,401,397	-				-2.2
3,401,397	-				-3.0
3,401,399	+				-0.8
3,401,399	+				+1.0
3,401,399	+				+0.1
3,401,399	+				-0.3
3,401,399	+				-0.2
3,401,399	+				-0.7
3,401,399	+				+1.2
3,401,399	+				-0.7
3,401,400	-				+0.4
3,401,400	-				-1.5
3,401,400	-				+0.1
3,401,454	-				+0.1
3,401,464	+				+4.2
3,401,464	+				-1.4
3,401,464	+				-0.8
3,401,464	+				+4.8
3,401,464	+				+0.5
3,401,464	+				-0.5
3,401,465	-				-0.1
3,401,465	-				+0.6
3,401,465	-				-1.0
3,401,465	-				-0.3
3,401,465	-				+3.2
3,401,485	-				-0.4
3,401,500	-				+0.4
3,401,503	+				-2.7
3,401,503	+				-2.0
3,401,504	-				-1.6
3,401,504	-				-2.5
3,401,504	-				+0.1
3,401,538	+				+1.5
3,401,538	+				+0.7
3,401,539	-				+0.4
3,401,539	-				-0.8
3,401,539	-				+4.5
3,401,539	-				-2.2
3,401,539	-				+0.4
3,401,593	+				-0.9
3,401,593	+				-1.0
3,401,594	-				-1.6
3,401,646	+		Sama_2863	0.12	-0.3
3,401,646	+		Sama_2863	0.12	+0.7
3,401,647	-		Sama_2863	0.13	+0.6
3,401,647	-		Sama_2863	0.13	-0.3
3,401,647	-		Sama_2863	0.13	-1.6
3,401,657	+		Sama_2863	0.13	+0.6
3,401,658	-		Sama_2863	0.13	+3.7
3,401,701	+		Sama_2863	0.17	-0.1
3,401,701	+		Sama_2863	0.17	-1.1
3,401,701	+		Sama_2863	0.17	+2.5
3,401,701	+		Sama_2863	0.17	-0.2
3,401,701	+		Sama_2863	0.17	+1.9
3,401,701	+		Sama_2863	0.17	-1.4
3,401,701	+		Sama_2863	0.17	+0.2
3,401,702	-		Sama_2863	0.17	-0.3
3,401,702	-		Sama_2863	0.17	-2.0
3,401,765	+		Sama_2863	0.22	-0.3
3,401,818	+		Sama_2863	0.26	+0.0
3,401,852	-		Sama_2863	0.28	+0.2
3,401,852	-		Sama_2863	0.28	-1.3
3,401,953	+		Sama_2863	0.36	+3.8
3,401,953	+		Sama_2863	0.36	-0.3
3,401,954	-		Sama_2863	0.36	+1.0
3,402,007	-		Sama_2863	0.40	-1.1
3,402,084	+		Sama_2863	0.46	-0.3
3,402,084	+		Sama_2863	0.46	+2.6
3,402,084	+		Sama_2863	0.46	+0.6
3,402,085	-		Sama_2863	0.46	-0.7
3,402,085	-		Sama_2863	0.46	-0.1
3,402,118	+		Sama_2863	0.49	+0.1
3,402,118	+		Sama_2863	0.49	+5.3
3,402,122	-		Sama_2863	0.49	-0.8
3,402,122	-		Sama_2863	0.49	-1.2
3,402,128	+		Sama_2863	0.49	+2.4
3,402,129	-		Sama_2863	0.49	-0.5
3,402,129	-		Sama_2863	0.49	-1.0
3,402,129	-		Sama_2863	0.49	+0.6
3,402,129	-		Sama_2863	0.49	+2.9
3,402,143	+		Sama_2863	0.50	-1.9
3,402,144	-		Sama_2863	0.51	-0.5
3,402,144	-		Sama_2863	0.51	+3.2
3,402,210	+		Sama_2863	0.56	-1.5
3,402,211	-		Sama_2863	0.56	+4.1
3,402,211	-		Sama_2863	0.56	+1.5
3,402,211	-		Sama_2863	0.56	-0.1
3,402,213	+		Sama_2863	0.56	-1.7
3,402,213	+		Sama_2863	0.56	-1.8
3,402,213	+		Sama_2863	0.56	-2.3
3,402,213	+		Sama_2863	0.56	+0.8
3,402,213	+		Sama_2863	0.56	-1.0
3,402,213	+		Sama_2863	0.56	-0.6
3,402,214	-		Sama_2863	0.56	+0.6
3,402,311	+		Sama_2863	0.63	+1.4
3,402,312	-		Sama_2863	0.63	+4.8
3,402,312	-		Sama_2863	0.63	-0.3
3,402,322	+		Sama_2863	0.64	+1.0
3,402,348	+		Sama_2863	0.66	+2.1
3,402,349	-		Sama_2863	0.66	+0.8
3,402,349	-		Sama_2863	0.66	+1.4
3,402,349	-		Sama_2863	0.66	+0.7
3,402,373	+		Sama_2863	0.68	-1.9
3,402,390	+		Sama_2863	0.69	-0.5
3,402,442	+		Sama_2863	0.73	+0.5
3,402,443	-		Sama_2863	0.73	+1.9
3,402,500	+		Sama_2863	0.78	+2.7
3,402,558	+		Sama_2863	0.82	-1.1
3,402,558	+		Sama_2863	0.82	-0.5
3,402,559	-		Sama_2863	0.82	-0.1
3,402,559	-		Sama_2863	0.82	+2.5
3,402,576	+		Sama_2863	0.84	+4.2
3,402,576	+		Sama_2863	0.84	+1.4
3,402,576	+		Sama_2863	0.84	+1.9
3,402,577	-		Sama_2863	0.84	-1.5
3,402,577	-		Sama_2863	0.84	+0.4
3,402,589	+		Sama_2863	0.85	-0.9
3,402,589	+		Sama_2863	0.85	+4.2
3,402,629	-		Sama_2863	0.88	-1.5
3,402,656	-		Sama_2863	0.90	-0.6
3,402,656	-		Sama_2863	0.90	-2.2
3,402,700	+				-1.2
3,402,701	-				+1.6
3,402,701	-				+0.3
3,402,701	-				+0.6
3,402,701	-				-2.4
3,402,777	+				-0.9
3,402,809	-				+1.4
3,402,854	+				+3.8
3,402,855	-				-0.1
3,402,855	-				-0.3
3,403,216	+		Sama_2864	0.60	-0.4
3,403,308	+		Sama_2864	0.73	+1.7
3,403,308	+		Sama_2864	0.73	+1.0
3,403,309	-		Sama_2864	0.73	-0.4
3,403,345	+		Sama_2864	0.79	+1.1
3,403,346	-		Sama_2864	0.79	+0.6
3,403,346	-		Sama_2864	0.79	+0.3
3,403,420	+		Sama_2864	0.89	-0.1
3,403,457	-				+2.5
3,403,469	-				-1.1
3,403,474	+				-0.7
3,403,475	-				-2.4
3,403,475	-				+4.1
3,403,487	+				-1.1
3,403,488	-				-0.8
3,403,505	+				-0.3
3,403,505	+				+1.3
3,403,506	-				-0.2
3,403,512	+				-1.4
3,403,512	+				+0.7
3,403,626	+				+4.7
3,403,663	+				+0.8
3,403,663	+				-0.2
3,403,664	-				-1.2
3,403,664	-				+1.0
3,403,709	+				-0.2
3,403,709	+				+2.7
3,403,709	+				-1.3
3,403,709	+				+3.4
3,403,710	-				+0.1
3,403,710	-				+0.7