Strain Fitness in Shewanella amazonensis SB2B around Sama_2855

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,392,574	+		Sama_2853	0.17	+4.3
3,392,574	+		Sama_2853	0.17	+1.8
3,392,575	-		Sama_2853	0.17	-1.0
3,392,575	-		Sama_2853	0.17	-0.3
3,392,578	-		Sama_2853	0.18	-2.4
3,392,779	+		Sama_2853	0.65	-0.3
3,392,779	+		Sama_2853	0.65	+1.1
3,392,780	-		Sama_2853	0.65	+1.5
3,392,780	-		Sama_2853	0.65	-2.9
3,392,836	+		Sama_2853	0.78	-1.5
3,392,836	+		Sama_2853	0.78	+1.6
3,392,843	+		Sama_2853	0.79	-0.3
3,392,843	+		Sama_2853	0.79	-0.6
3,392,843	+		Sama_2853	0.79	-0.8
3,392,843	+		Sama_2853	0.79	+1.1
3,392,844	-		Sama_2853	0.80	+0.4
3,392,844	-		Sama_2853	0.80	-1.9
3,392,867	+		Sama_2853	0.85	-0.7
3,392,867	+		Sama_2853	0.85	+0.1
3,392,867	+		Sama_2853	0.85	-0.7
3,392,867	+		Sama_2853	0.85	-1.7
3,392,867	+		Sama_2853	0.85	-2.2
3,392,868	-		Sama_2853	0.85	+3.8
3,392,868	-		Sama_2853	0.85	-1.3
3,392,895	+				-1.7
3,392,895	+				-1.4
3,392,914	+				+0.7
3,392,914	+				+1.9
3,392,915	-				+0.6
3,392,915	-				+1.2
3,392,925	+				-1.3
3,392,926	-				+0.5
3,392,931	+				-1.0
3,392,931	+				+0.8
3,392,931	+				-0.8
3,392,932	-				+4.0
3,392,932	-				-1.8
3,392,932	-				+0.4
3,392,932	-				+2.4
3,392,935	+				-1.9
3,392,935	+				-0.3
3,392,935	+				-1.0
3,392,935	+				-2.1
3,392,936	-				-0.1
3,392,936	-				+1.7
3,392,936	-				+3.6
3,392,936	-				-2.4
3,392,936	-				+3.6
3,392,948	-				-0.5
3,392,958	-				-0.0
3,392,966	+				-1.7
3,393,042	-		Sama_2854	0.16	-0.5
3,393,197	+		Sama_2854	0.57	-1.0
3,393,198	-		Sama_2854	0.57	-1.9
3,393,199	+		Sama_2854	0.57	-1.4
3,393,199	+		Sama_2854	0.57	-1.2
3,393,199	+		Sama_2854	0.57	+2.3
3,393,199	+		Sama_2854	0.57	+1.9
3,393,199	+		Sama_2854	0.57	+0.1
3,393,199	+		Sama_2854	0.57	+4.1
3,393,199	+		Sama_2854	0.57	-1.2
3,393,199	+		Sama_2854	0.57	+1.2
3,393,200	-		Sama_2854	0.58	-1.9
3,393,200	-		Sama_2854	0.58	-2.6
3,393,200	-		Sama_2854	0.58	-1.3
3,393,200	-		Sama_2854	0.58	+0.9
3,393,200	-		Sama_2854	0.58	-0.7
3,393,200	-		Sama_2854	0.58	-1.5
3,393,200	-		Sama_2854	0.58	-1.9
3,393,259	+		Sama_2854	0.73	-0.2
3,393,259	+		Sama_2854	0.73	+1.2
3,393,260	-		Sama_2854	0.73	-0.8
3,393,260	-		Sama_2854	0.73	-0.4
3,393,260	-		Sama_2854	0.73	-0.5
3,393,333	+				-0.3
3,393,334	-				+0.2
3,393,339	+				-1.0
3,393,339	+				+1.4
3,393,339	+				-1.3
3,393,339	+				+0.3
3,393,340	-				+1.6
3,393,340	-				-0.1
3,393,355	-				-0.6
3,393,387	+				+1.1
3,393,392	+				+2.3
3,393,393	-				-2.0
3,393,393	-				+0.5
3,393,393	-				+2.9
3,393,393	-				+1.3
3,393,393	-				-1.9
3,393,393	-				-0.4
3,393,398	+				-0.9
3,393,399	-				+0.4
3,393,475	+				-1.1
3,393,476	-				+0.9
3,393,569	-				-0.4
3,393,624	+				-1.4
3,393,625	-				-0.7
3,393,625	-				+1.1
3,393,625	-				-0.9
3,393,625	-				-0.3
3,393,700	+		Sama_2855	0.12	-0.8
3,393,721	-		Sama_2855	0.14	+3.8
3,393,786	+		Sama_2855	0.18	+3.5
3,393,786	+		Sama_2855	0.18	-1.5
3,393,786	+		Sama_2855	0.18	-1.2
3,393,787	-		Sama_2855	0.18	+2.0
3,393,873	+		Sama_2855	0.24	+0.2
3,393,873	+		Sama_2855	0.24	-1.3
3,393,873	+		Sama_2855	0.24	-1.9
3,393,874	-		Sama_2855	0.24	+1.2
3,393,874	-		Sama_2855	0.24	+3.9
3,393,874	-		Sama_2855	0.24	-0.8
3,393,874	-		Sama_2855	0.24	+0.5
3,393,901	+		Sama_2855	0.26	-0.2
3,393,902	-		Sama_2855	0.26	+1.3
3,393,928	+		Sama_2855	0.28	-1.9
3,393,928	+		Sama_2855	0.28	+0.1
3,394,010	+		Sama_2855	0.34	-1.1
3,394,011	-		Sama_2855	0.34	+1.5
3,394,011	-		Sama_2855	0.34	-0.2
3,394,100	+		Sama_2855	0.40	+1.3
3,394,100	+		Sama_2855	0.40	-2.0
3,394,100	+		Sama_2855	0.40	-0.7
3,394,100	+		Sama_2855	0.40	+1.1
3,394,101	-		Sama_2855	0.40	-0.5
3,394,242	-		Sama_2855	0.50	+1.3
3,394,314	+		Sama_2855	0.55	-0.5
3,394,314	+		Sama_2855	0.55	-0.8
3,394,314	+		Sama_2855	0.55	-0.5
3,394,314	+		Sama_2855	0.55	-2.6
3,394,314	+		Sama_2855	0.55	+1.2
3,394,314	+		Sama_2855	0.55	+1.4
3,394,314	+		Sama_2855	0.55	-1.5
3,394,315	-		Sama_2855	0.55	-0.6
3,394,315	-		Sama_2855	0.55	-2.0
3,394,315	-		Sama_2855	0.55	+1.6
3,394,315	-		Sama_2855	0.55	+0.1
3,394,315	-		Sama_2855	0.55	+0.9
3,394,315	-		Sama_2855	0.55	+5.4
3,394,315	-		Sama_2855	0.55	+1.8
3,394,349	+		Sama_2855	0.57	-0.4
3,394,349	+		Sama_2855	0.57	+0.5
3,394,350	-		Sama_2855	0.57	-1.3
3,394,350	-		Sama_2855	0.57	-0.5
3,394,350	-		Sama_2855	0.57	+0.2
3,394,359	+		Sama_2855	0.58	-2.1
3,394,383	+		Sama_2855	0.60	-0.6
3,394,384	-		Sama_2855	0.60	+0.7
3,394,403	+		Sama_2855	0.61	-1.0
3,394,410	+		Sama_2855	0.61	+1.8
3,394,410	+		Sama_2855	0.61	+2.4
3,394,410	+		Sama_2855	0.61	+0.6
3,394,410	+		Sama_2855	0.61	-0.4
3,394,447	+		Sama_2855	0.64	+4.0
3,394,447	+		Sama_2855	0.64	-3.7
3,394,647	+		Sama_2855	0.78	-1.3
3,394,647	+		Sama_2855	0.78	-0.3
3,394,648	-		Sama_2855	0.78	-0.9
3,394,648	-		Sama_2855	0.78	-1.6
3,394,648	-		Sama_2855	0.78	+3.8
3,394,648	-		Sama_2855	0.78	-1.6
3,394,648	-		Sama_2855	0.78	-1.1
3,394,680	+		Sama_2855	0.80	-3.8
3,394,681	-		Sama_2855	0.80	+3.0
3,394,681	-		Sama_2855	0.80	+4.6
3,394,917	+				-0.9
3,395,078	+		Sama_2856	0.17	+0.7
3,395,108	+		Sama_2856	0.22	+0.6
3,395,109	-		Sama_2856	0.23	-1.9
3,395,329	+		Sama_2856	0.60	-0.1
3,395,458	-		Sama_2856	0.82	+0.6
3,395,550	-				-0.9
3,395,550	-				+0.3
3,395,559	+				-0.5
3,395,559	+				+1.3
3,395,559	+				-0.6
3,395,605	+				-2.0
3,395,605	+				+0.0
3,395,605	+				-1.4
3,395,605	+				+3.0
3,395,605	+				-0.5
3,395,605	+				+0.9
3,395,606	-				+1.9
3,395,606	-				-1.2
3,395,606	-				-1.6
3,395,606	-				-1.5
3,395,606	-				-1.6
3,395,613	+				+1.6
3,395,613	+				+1.3
3,395,613	+				+1.1
3,395,613	+				-0.6
3,395,614	-				+1.2
3,395,614	-				+0.7
3,395,614	-				-1.5
3,395,621	-				-0.6
3,395,636	+				-1.1
3,395,676	+				-1.2
3,395,676	+				-1.1
3,395,677	-				+0.2
3,395,677	-				+0.1
3,395,677	-				-0.6
3,395,677	-				-2.0
3,395,732	+				-1.1
3,395,820	+		Sama_2857	0.18	+0.7
3,395,820	+		Sama_2857	0.18	-1.8
3,395,820	+		Sama_2857	0.18	+2.4
3,395,821	-		Sama_2857	0.18	+0.1
3,395,821	-		Sama_2857	0.18	+0.2
3,395,821	-		Sama_2857	0.18	-0.5
3,395,911	-		Sama_2857	0.29	-1.4
3,395,960	+		Sama_2857	0.36	-0.5
3,395,960	+		Sama_2857	0.36	+1.0
3,395,961	-		Sama_2857	0.36	-1.1
3,395,961	-		Sama_2857	0.36	+0.1
3,395,961	-		Sama_2857	0.36	-1.0
3,395,961	-		Sama_2857	0.36	-0.0