Strain Fitness in Shewanella amazonensis SB2B around Sama_2646

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,169,432	-		Sama_2645	0.28	-2.6
3,169,432	-		Sama_2645	0.28	-1.7
3,169,480	+		Sama_2645	0.35	+0.2
3,169,481	-		Sama_2645	0.35	-3.5
3,169,520	+		Sama_2645	0.40	-0.5
3,169,520	+		Sama_2645	0.40	+1.3
3,169,521	-		Sama_2645	0.40	+4.1
3,169,521	-		Sama_2645	0.40	-1.1
3,169,582	+		Sama_2645	0.48	-0.8
3,169,582	+		Sama_2645	0.48	-1.3
3,169,641	+		Sama_2645	0.56	+2.5
3,169,641	+		Sama_2645	0.56	+2.7
3,169,649	-		Sama_2645	0.57	-0.6
3,169,748	+		Sama_2645	0.70	+2.2
3,169,749	-		Sama_2645	0.70	-1.6
3,169,749	-		Sama_2645	0.70	-0.5
3,169,789	+		Sama_2645	0.75	-1.6
3,169,790	-		Sama_2645	0.75	-2.7
3,169,790	-		Sama_2645	0.75	-1.2
3,169,790	-		Sama_2645	0.75	-2.7
3,169,790	-		Sama_2645	0.75	-2.0
3,169,790	-		Sama_2645	0.75	-2.8
3,169,840	-		Sama_2645	0.82	-1.3
3,169,875	+		Sama_2645	0.86	+3.5
3,169,876	-		Sama_2645	0.86	-1.8
3,169,876	-		Sama_2645	0.86	-1.6
3,169,886	-		Sama_2645	0.88	+4.1
3,169,908	+				+3.5
3,169,909	-				-1.6
3,169,911	+				+2.1
3,169,936	-				-0.8
3,169,938	+				+2.9
3,169,939	-				-2.8
3,169,939	-				-2.0
3,169,939	-				-0.1
3,169,939	-				-0.5
3,169,939	-				-3.6
3,169,939	-				-3.0
3,169,956	+				+3.4
3,169,956	+				+4.0
3,169,957	-				-2.4
3,169,980	+				+3.2
3,169,980	+				+2.8
3,169,980	+				+1.3
3,169,980	+				+2.8
3,169,980	+				+2.7
3,169,980	+				+2.5
3,169,980	+				+3.6
3,169,981	-				-2.4
3,169,981	-				-3.3
3,169,981	-				-2.5
3,169,981	-				-1.6
3,169,981	-				-3.1
3,169,981	-				-1.0
3,169,981	-				-1.4
3,169,981	-				+2.9
3,169,981	-				-0.2
3,169,981	-				-3.2
3,169,981	-				-1.6
3,169,981	-				-0.1
3,169,981	-				-0.8
3,169,981	-				-3.5
3,169,981	-				-0.6
3,169,981	-				-2.1
3,169,981	-				-0.6
3,169,981	-				-1.8
3,170,065	+				-0.8
3,170,080	+				-2.5
3,170,089	+				-2.9
3,170,125	-				-2.1
3,170,161	+				-1.1
3,170,161	+				-1.2
3,170,161	+				-2.1
3,170,162	-				-3.2
3,170,165	+				+0.7
3,170,165	+				-0.9
3,170,165	-				-1.6
3,170,165	+				-2.0
3,170,166	-				+4.6
3,170,166	-				-1.1
3,170,264	-				+6.4
3,170,274	-				-3.2
3,170,338	+				-2.0
3,170,339	-				-3.0
3,170,509	-		Sama_2646	0.16	-3.6
3,170,512	-		Sama_2646	0.17	-1.1
3,170,512	-		Sama_2646	0.17	-3.1
3,170,512	-		Sama_2646	0.17	-0.3
3,170,512	-		Sama_2646	0.17	-1.5
3,170,512	-		Sama_2646	0.17	-0.5
3,170,512	-		Sama_2646	0.17	-1.2
3,170,624	-		Sama_2646	0.37	-2.5
3,170,624	-		Sama_2646	0.37	-2.4
3,170,624	-		Sama_2646	0.37	-1.0
3,170,714	-		Sama_2646	0.54	-2.9
3,170,714	-		Sama_2646	0.54	-1.8
3,170,714	-		Sama_2646	0.54	-2.3
3,170,717	+		Sama_2646	0.54	-2.4
3,170,717	+		Sama_2646	0.54	-0.8
3,170,717	+		Sama_2646	0.54	-2.7
3,170,718	-		Sama_2646	0.54	-2.0
3,170,718	-		Sama_2646	0.54	-2.2
3,170,718	-		Sama_2646	0.54	-0.3
3,170,718	-		Sama_2646	0.54	+2.5
3,170,718	-		Sama_2646	0.54	-2.6
3,170,718	-		Sama_2646	0.54	-1.4
3,170,718	-		Sama_2646	0.54	-2.9
3,170,718	-		Sama_2646	0.54	-1.1
3,170,718	-		Sama_2646	0.54	-2.6
3,170,718	-		Sama_2646	0.54	-1.8
3,170,718	-		Sama_2646	0.54	-3.2
3,170,718	-		Sama_2646	0.54	-3.2
3,170,720	-		Sama_2646	0.55	+4.2
3,170,804	-		Sama_2646	0.70	-2.6
3,170,804	-		Sama_2646	0.70	-2.8
3,170,804	-		Sama_2646	0.70	-2.8
3,170,804	-		Sama_2646	0.70	-0.9
3,170,804	-		Sama_2646	0.70	-1.8
3,170,804	-		Sama_2646	0.70	+2.8
3,170,804	-		Sama_2646	0.70	+0.3
3,170,804	-		Sama_2646	0.70	-1.6
3,170,804	-		Sama_2646	0.70	-3.4
3,170,804	-		Sama_2646	0.70	-1.1
3,170,879	-		Sama_2646	0.84	-2.7
3,170,879	-		Sama_2646	0.84	-1.5
3,170,879	-		Sama_2646	0.84	-0.5
3,170,879	-		Sama_2646	0.84	+3.9
3,170,996	-				+3.2
3,170,996	-				-1.8
3,171,011	-				-3.4
3,171,011	-				-0.4
3,171,011	-				+2.1
3,171,022	+				-0.4
3,171,022	+				-1.4
3,171,023	-				-1.4
3,171,023	-				+0.7
3,171,023	-				+0.0
3,171,023	-				+2.8
3,171,042	-				-3.2
3,171,116	+				+0.3
3,171,189	-				-1.2
3,171,194	+				+0.8
3,171,216	+				-3.3
3,171,218	+				+4.7
3,171,218	+				-1.0
3,171,218	+				-1.5
3,171,218	+				-0.6
3,171,218	+				-2.7
3,171,218	+				-1.7
3,171,219	-				+0.5
3,171,219	-				+0.7
3,171,238	-				-0.5
3,171,238	-				+1.8
3,171,243	-				+1.1
3,171,293	+				-0.5
3,171,293	+				+0.2
3,171,293	+				+2.1
3,171,293	+				-0.3
3,171,293	+				+0.7
3,171,293	+				+0.4
3,171,293	+				-0.1
3,171,294	-				-0.5
3,171,294	-				-1.2
3,171,294	-				+1.5
3,171,294	-				+0.8
3,171,294	-				-0.9
3,171,312	+				+4.6
3,171,382	+				-1.8
3,171,383	-				+0.8
3,171,506	+		Sama_2647	0.19	-2.3
3,171,507	-		Sama_2647	0.19	-0.6
3,171,507	-		Sama_2647	0.19	-1.3
3,171,604	+		Sama_2647	0.26	-1.1
3,171,632	+		Sama_2647	0.28	+1.5
3,171,633	-		Sama_2647	0.28	+3.8
3,171,657	+		Sama_2647	0.30	-1.8
3,171,658	-		Sama_2647	0.30	+1.4
3,171,686	+		Sama_2647	0.32	+2.2
3,171,769	+		Sama_2647	0.39	-1.2
3,171,769	+		Sama_2647	0.39	+0.7
3,171,769	+		Sama_2647	0.39	-1.4
3,171,770	-		Sama_2647	0.39	-1.3
3,171,781	+		Sama_2647	0.40	-1.4
3,171,781	+		Sama_2647	0.40	+4.8
3,171,781	+		Sama_2647	0.40	-0.6
3,171,781	+		Sama_2647	0.40	+1.7
3,171,781	+		Sama_2647	0.40	-0.5
3,171,782	-		Sama_2647	0.40	-1.9
3,171,795	+		Sama_2647	0.41	-0.2
3,171,920	+		Sama_2647	0.50	-0.4
3,171,920	+		Sama_2647	0.50	-1.0
3,171,920	+		Sama_2647	0.50	-1.8
3,171,921	-		Sama_2647	0.50	-1.6