Strain Fitness in Shewanella amazonensis SB2B around Sama_2008

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
2,438,799	+		Sama_2007	0.12	-0.9
2,438,800	-		Sama_2007	0.12	-2.1
2,438,832	-		Sama_2007	0.15	+1.4
2,438,886	-		Sama_2007	0.21	+3.6
2,438,948	+		Sama_2007	0.27	+1.3
2,438,948	+		Sama_2007	0.27	+2.7
2,438,948	+		Sama_2007	0.27	+3.0
2,438,951	+		Sama_2007	0.27	-0.0
2,438,951	+		Sama_2007	0.27	-0.5
2,438,951	+		Sama_2007	0.27	-1.1
2,438,952	-		Sama_2007	0.27	-0.6
2,438,952	-		Sama_2007	0.27	-0.3
2,439,008	+		Sama_2007	0.33	-2.1
2,439,036	+		Sama_2007	0.36	-2.3
2,439,063	+		Sama_2007	0.38	+0.0
2,439,063	+		Sama_2007	0.38	+1.1
2,439,063	+		Sama_2007	0.38	+0.3
2,439,063	+		Sama_2007	0.38	+4.1
2,439,064	-		Sama_2007	0.38	-2.6
2,439,064	-		Sama_2007	0.38	+0.4
2,439,064	-		Sama_2007	0.38	-0.6
2,439,115	+		Sama_2007	0.43	-1.3
2,439,212	+		Sama_2007	0.53	-1.3
2,439,212	+		Sama_2007	0.53	+0.4
2,439,212	+		Sama_2007	0.53	-0.5
2,439,212	+		Sama_2007	0.53	-0.5
2,439,212	+		Sama_2007	0.53	+0.6
2,439,212	+		Sama_2007	0.53	+0.8
2,439,213	-		Sama_2007	0.53	+3.6
2,439,302	+		Sama_2007	0.62	-1.3
2,439,302	+		Sama_2007	0.62	-1.3
2,439,347	+		Sama_2007	0.67	+0.8
2,439,347	+		Sama_2007	0.67	-0.3
2,439,347	+		Sama_2007	0.67	+2.6
2,439,347	+		Sama_2007	0.67	-1.8
2,439,348	-		Sama_2007	0.67	-0.1
2,439,348	-		Sama_2007	0.67	-0.7
2,439,361	-		Sama_2007	0.68	-1.9
2,439,368	+		Sama_2007	0.69	-0.9
2,439,369	-		Sama_2007	0.69	-1.9
2,439,400	+		Sama_2007	0.72	+1.2
2,439,400	+		Sama_2007	0.72	-1.7
2,439,401	-		Sama_2007	0.72	+0.3
2,439,401	-		Sama_2007	0.72	+0.4
2,439,404	+		Sama_2007	0.72	-2.3
2,439,404	+		Sama_2007	0.72	-0.3
2,439,404	+		Sama_2007	0.72	-1.0
2,439,404	+		Sama_2007	0.72	-0.9
2,439,404	+		Sama_2007	0.72	+0.6
2,439,404	+		Sama_2007	0.72	+0.3
2,439,404	+		Sama_2007	0.72	+0.0
2,439,405	-		Sama_2007	0.72	-0.4
2,439,405	-		Sama_2007	0.72	+2.8
2,439,406	+		Sama_2007	0.72	-0.5
2,439,406	+		Sama_2007	0.72	-1.5
2,439,406	+		Sama_2007	0.72	-2.0
2,439,406	+		Sama_2007	0.72	-1.6
2,439,406	+		Sama_2007	0.72	+1.7
2,439,406	+		Sama_2007	0.72	+0.7
2,439,407	-		Sama_2007	0.73	-0.9
2,439,407	-		Sama_2007	0.73	-1.3
2,439,442	+		Sama_2007	0.76	-1.4
2,439,443	-		Sama_2007	0.76	-2.4
2,439,452	+		Sama_2007	0.77	+1.8
2,439,452	+		Sama_2007	0.77	-2.3
2,439,452	+		Sama_2007	0.77	+0.2
2,439,453	-		Sama_2007	0.77	-0.0
2,439,540	+		Sama_2007	0.86	-0.8
2,439,540	+		Sama_2007	0.86	-1.1
2,439,541	-		Sama_2007	0.86	-0.1
2,439,606	+				-2.1
2,439,606	+				-1.3
2,439,606	+				-1.0
2,439,606	+				+0.8
2,439,607	-				+3.0
2,439,607	-				+0.1
2,439,700	+				+1.3
2,439,730	+				+1.2
2,439,747	+				+0.1
2,439,830	-				-1.7
2,439,834	+				-1.6
2,439,834	+				-1.1
2,439,845	+				-1.4
2,439,875	+				-2.0
2,439,876	-				-2.0
2,439,876	-				-1.2
2,439,876	-				-0.6
2,439,876	-				-2.2
2,439,940	+		Sama_2008	0.14	-2.9
2,439,941	-		Sama_2008	0.14	-1.9
2,439,941	-		Sama_2008	0.14	+0.3
2,439,941	-		Sama_2008	0.14	-0.3
2,440,056	-		Sama_2008	0.24	-2.0
2,440,056	-		Sama_2008	0.24	-2.9
2,440,056	-		Sama_2008	0.24	-1.9
2,440,105	+		Sama_2008	0.28	-1.8
2,440,106	-		Sama_2008	0.28	-2.4
2,440,106	-		Sama_2008	0.28	-1.2
2,440,106	-		Sama_2008	0.28	-3.2
2,440,106	-		Sama_2008	0.28	-0.6
2,440,136	+		Sama_2008	0.30	-2.8
2,440,136	+		Sama_2008	0.30	-1.4
2,440,136	+		Sama_2008	0.30	-2.0
2,440,137	-		Sama_2008	0.31	-1.4
2,440,137	-		Sama_2008	0.31	-0.7
2,440,137	-		Sama_2008	0.31	-1.3
2,440,137	-		Sama_2008	0.31	-1.1
2,440,137	-		Sama_2008	0.31	-2.6
2,440,165	+		Sama_2008	0.33	-1.4
2,440,166	-		Sama_2008	0.33	-1.8
2,440,168	+		Sama_2008	0.33	-0.9
2,440,169	-		Sama_2008	0.33	-2.1
2,440,169	-		Sama_2008	0.33	-2.0
2,440,169	-		Sama_2008	0.33	-1.6
2,440,202	+		Sama_2008	0.36	-0.1
2,440,248	+		Sama_2008	0.40	-0.9
2,440,248	+		Sama_2008	0.40	-0.9
2,440,249	-		Sama_2008	0.40	-1.0
2,440,316	+		Sama_2008	0.45	-2.8
2,440,399	+		Sama_2008	0.52	-2.4
2,440,399	+		Sama_2008	0.52	-2.5
2,440,399	+		Sama_2008	0.52	-2.2
2,440,400	-		Sama_2008	0.52	-2.7
2,440,454	-		Sama_2008	0.57	-3.1
2,440,480	+		Sama_2008	0.59	-2.8
2,440,480	+		Sama_2008	0.59	-0.7
2,440,516	+		Sama_2008	0.62	-1.9
2,440,516	+		Sama_2008	0.62	-3.8
2,440,516	+		Sama_2008	0.62	-3.2
2,440,517	-		Sama_2008	0.62	-2.9
2,440,860	+				-0.0
2,440,861	-				-4.0
2,440,861	-				-2.0
2,441,022	+				-1.2
2,441,022	+				-1.6
2,441,022	+				-1.7
2,441,022	+				-0.7
2,441,022	+				-0.6
2,441,022	+				+2.4
2,441,022	+				-0.7
2,441,022	+				-0.7
2,441,022	+				+1.6
2,441,022	+				+1.1
2,441,022	+				-1.9
2,441,023	-				-0.7
2,441,023	-				+2.2
2,441,023	-				+0.9
2,441,023	-				-0.1
2,441,027	-				-0.4
2,441,027	-				+1.2
2,441,052	+				-1.6
2,441,053	-				-0.2
2,441,053	-				+0.2
2,441,053	-				-2.5
2,441,067	+				-2.1
2,441,068	-				-0.3
2,441,143	-				+0.2
2,441,196	+		Sama_2009	0.11	-1.7
2,441,197	-		Sama_2009	0.11	+0.7
2,441,198	+		Sama_2009	0.12	-1.0
2,441,198	+		Sama_2009	0.12	+2.9
2,441,262	+		Sama_2009	0.24	+0.4
2,441,262	+		Sama_2009	0.24	+1.4
2,441,262	+		Sama_2009	0.24	-1.2
2,441,263	-		Sama_2009	0.25	-1.3
2,441,263	-		Sama_2009	0.25	-1.1
2,441,289	+		Sama_2009	0.30	-0.8
2,441,290	-		Sama_2009	0.30	+0.1
2,441,290	-		Sama_2009	0.30	-1.2
2,441,293	+		Sama_2009	0.31	+0.0
2,441,315	-		Sama_2009	0.35	+0.6
2,441,315	-		Sama_2009	0.35	-0.5
2,441,447	+		Sama_2009	0.62	-1.5
2,441,448	-		Sama_2009	0.62	-1.5
2,441,534	-		Sama_2009	0.79	+0.8
2,441,582	+		Sama_2009	0.89	+0.3
2,441,583	-		Sama_2009	0.89	-1.0
2,441,583	-		Sama_2009	0.89	+0.7
2,441,603	+				-0.0
2,441,635	+				-0.7
2,441,635	+				-0.7
2,441,635	+				+0.3
2,441,636	-				-1.9
2,441,636	-				+0.1
2,441,636	-				-2.0
2,441,637	+				+0.3
2,441,637	+				-1.7
2,441,638	-				+0.3
2,441,638	-				+1.7
2,441,638	-				-1.2
2,441,638	-				+2.8
2,441,654	-				-1.2
2,441,654	-				-0.6
2,441,741	+				-2.5
2,441,741	+				-2.6
2,441,798	+		Sama_2010	0.10	+2.6
2,441,799	-		Sama_2010	0.11	-1.0
2,441,799	-		Sama_2010	0.11	-0.2
2,441,799	-		Sama_2010	0.11	+1.6
2,441,854	-		Sama_2010	0.15	-1.1