Strain Fitness in Shewanella amazonensis SB2B around Sama_1891

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
2,305,875	+				-1.3
2,305,875	+				-0.3
2,305,875	+				+1.5
2,305,883	+				+0.0
2,306,025	+		Sama_1890	0.19	+4.3
2,306,026	-		Sama_1890	0.19	+1.4
2,306,068	-		Sama_1890	0.24	+2.2
2,306,114	+		Sama_1890	0.28	-0.7
2,306,114	+		Sama_1890	0.28	+0.3
2,306,114	+		Sama_1890	0.28	-0.7
2,306,115	-		Sama_1890	0.28	-1.1
2,306,115	-		Sama_1890	0.28	-1.7
2,306,115	-		Sama_1890	0.28	+0.9
2,306,115	-		Sama_1890	0.28	+0.2
2,306,115	-		Sama_1890	0.28	-1.4
2,306,131	+		Sama_1890	0.30	-1.4
2,306,131	+		Sama_1890	0.30	-0.2
2,306,146	-		Sama_1890	0.32	+0.6
2,306,149	+		Sama_1890	0.32	-0.5
2,306,150	-		Sama_1890	0.32	-0.3
2,306,150	-		Sama_1890	0.32	+4.6
2,306,195	-		Sama_1890	0.36	-0.4
2,306,246	-		Sama_1890	0.42	-0.5
2,306,290	-		Sama_1890	0.46	-1.4
2,306,290	-		Sama_1890	0.46	+2.6
2,306,403	-		Sama_1890	0.58	-0.1
2,306,403	-		Sama_1890	0.58	+0.9
2,306,466	-		Sama_1890	0.64	-0.8
2,306,466	-		Sama_1890	0.64	-0.2
2,306,484	+		Sama_1890	0.66	+0.6
2,306,484	+		Sama_1890	0.66	+1.2
2,306,485	-		Sama_1890	0.66	+1.5
2,306,485	-		Sama_1890	0.66	-0.3
2,306,487	+		Sama_1890	0.66	+3.3
2,306,491	+		Sama_1890	0.66	-0.4
2,306,491	+		Sama_1890	0.66	+4.2
2,306,491	+		Sama_1890	0.66	+3.3
2,306,491	+		Sama_1890	0.66	-2.9
2,306,491	+		Sama_1890	0.66	-1.7
2,306,492	-		Sama_1890	0.67	-0.0
2,306,512	+		Sama_1890	0.69	-1.3
2,306,535	+		Sama_1890	0.71	+0.2
2,306,566	+		Sama_1890	0.74	-0.2
2,306,567	-		Sama_1890	0.74	+2.4
2,306,609	+		Sama_1890	0.78	-0.6
2,306,610	-		Sama_1890	0.79	-2.3
2,306,634	+		Sama_1890	0.81	-2.4
2,306,634	+		Sama_1890	0.81	+0.2
2,306,634	+		Sama_1890	0.81	+0.1
2,306,635	-		Sama_1890	0.81	-0.8
2,306,655	-		Sama_1890	0.83	-3.2
2,306,862	-				-0.2
2,306,898	+				-2.1
2,306,898	+				-0.5
2,306,899	-				+4.7
2,306,900	+				-0.7
2,306,901	-				+1.3
2,306,908	+				-1.7
2,306,909	-				-0.6
2,306,909	-				-1.0
2,306,927	+				+6.0
2,306,928	-				-0.8
2,306,947	+				-0.4
2,306,947	+				-1.6
2,306,948	-				-1.3
2,306,948	-				-0.6
2,306,948	-				-0.0
2,306,953	+				-0.5
2,306,996	+		Sama_1891	0.13	-2.4
2,306,996	+		Sama_1891	0.13	-1.3
2,306,996	+		Sama_1891	0.13	+0.3
2,306,996	+		Sama_1891	0.13	+1.7
2,306,996	+		Sama_1891	0.13	+2.5
2,307,023	+		Sama_1891	0.15	+0.8
2,307,059	+		Sama_1891	0.18	-1.4
2,307,100	+		Sama_1891	0.21	-0.5
2,307,100	+		Sama_1891	0.21	-0.9
2,307,163	+		Sama_1891	0.25	-0.8
2,307,164	-		Sama_1891	0.26	+4.7
2,307,230	+		Sama_1891	0.31	-1.6
2,307,230	+		Sama_1891	0.31	-0.1
2,307,231	-		Sama_1891	0.31	-1.3
2,307,231	-		Sama_1891	0.31	-3.5
2,307,260	+		Sama_1891	0.33	-2.0
2,307,260	+		Sama_1891	0.33	-1.3
2,307,260	+		Sama_1891	0.33	-3.6
2,307,261	-		Sama_1891	0.33	+0.4
2,307,301	+		Sama_1891	0.36	+0.6
2,307,381	-		Sama_1891	0.42	-1.7
2,307,417	-		Sama_1891	0.45	-1.6
2,307,452	+		Sama_1891	0.48	-1.9
2,307,453	-		Sama_1891	0.48	+0.8
2,307,453	-		Sama_1891	0.48	-0.7
2,307,499	-		Sama_1891	0.51	+5.3
2,307,519	-		Sama_1891	0.53	-0.6
2,307,529	-		Sama_1891	0.53	+0.9
2,307,543	+		Sama_1891	0.55	-1.2
2,307,543	+		Sama_1891	0.55	+0.3
2,307,543	+		Sama_1891	0.55	+3.7
2,307,543	+		Sama_1891	0.55	-1.3
2,307,543	+		Sama_1891	0.55	+3.4
2,307,602	+		Sama_1891	0.59	-2.1
2,307,602	+		Sama_1891	0.59	+0.8
2,307,608	-		Sama_1891	0.59	-0.0
2,307,665	+		Sama_1891	0.64	-1.6
2,307,665	+		Sama_1891	0.64	-1.6
2,307,735	+		Sama_1891	0.69	+1.6
2,307,735	+		Sama_1891	0.69	+1.2
2,307,757	-		Sama_1891	0.71	-1.8
2,307,757	-		Sama_1891	0.71	+0.2
2,307,757	-		Sama_1891	0.71	+1.2
2,307,760	+		Sama_1891	0.71	-2.5
2,307,835	-		Sama_1891	0.77	-1.0
2,307,846	+		Sama_1891	0.78	-2.0
2,307,849	-		Sama_1891	0.78	+1.2
2,307,885	-		Sama_1891	0.81	+0.1
2,307,885	-		Sama_1891	0.81	+1.5
2,307,949	-		Sama_1891	0.86	-0.1
2,307,984	+		Sama_1891	0.88	-2.4
2,307,984	+		Sama_1891	0.88	+1.8
2,308,014	+				+2.2
2,308,014	+				-0.5
2,308,015	-				-1.4
2,308,022	+				+0.5
2,308,023	-				+0.9
2,308,023	-				-1.7
2,308,033	-				-1.8
2,308,057	+				-2.1
2,308,057	+				-1.1
2,308,057	+				+2.4
2,308,057	+				-2.4
2,308,058	-				-2.1
2,308,058	-				-2.9
2,308,058	-				-1.4
2,308,058	-				-1.5
2,308,058	-				-1.2
2,308,058	-				+3.2
2,308,058	-				-1.6
2,308,058	-				+1.8
2,308,058	-				+1.6
2,308,065	+				-1.1
2,308,066	-				+1.2
2,308,066	-				+0.2
2,308,135	+				+0.7
2,308,162	+		Sama_1892	0.11	+0.5
2,308,162	+		Sama_1892	0.11	-1.4
2,308,214	-		Sama_1892	0.20	+0.5
2,308,226	+		Sama_1892	0.22	+3.5
2,308,231	+		Sama_1892	0.22	+0.6
2,308,231	+		Sama_1892	0.22	+0.2
2,308,232	-		Sama_1892	0.23	+1.0
2,308,257	-		Sama_1892	0.27	-1.8
2,308,266	+		Sama_1892	0.28	+0.6
2,308,266	+		Sama_1892	0.28	+0.2
2,308,266	+		Sama_1892	0.28	-1.2
2,308,266	+		Sama_1892	0.28	-0.1
2,308,266	+		Sama_1892	0.28	-2.9
2,308,267	-		Sama_1892	0.28	-1.8
2,308,304	-		Sama_1892	0.34	-2.4
2,308,304	-		Sama_1892	0.34	+1.8
2,308,313	-		Sama_1892	0.36	+4.4
2,308,371	-		Sama_1892	0.45	+0.6
2,308,417	+		Sama_1892	0.52	+1.4
2,308,418	-		Sama_1892	0.52	+1.8
2,308,442	-		Sama_1892	0.56	-1.3
2,308,458	-		Sama_1892	0.59	+0.2
2,308,458	-		Sama_1892	0.59	+1.8
2,308,458	-		Sama_1892	0.59	+1.2
2,308,462	-		Sama_1892	0.59	+2.0
2,308,462	-		Sama_1892	0.59	+1.1
2,308,514	-		Sama_1892	0.68	-0.6
2,308,723	+				+0.4
2,308,747	+				-1.7
2,308,748	-				-2.7
2,308,748	-				+4.1
2,308,758	+				-0.4
2,308,758	+				+0.5
2,308,827	+		Sama_1893	0.11	+0.5
2,308,828	-		Sama_1893	0.11	+0.2
2,308,878	+		Sama_1893	0.16	-1.4
2,308,878	+		Sama_1893	0.16	-0.5
2,308,879	-		Sama_1893	0.16	+2.5
2,308,879	-		Sama_1893	0.16	+0.4
2,308,889	-		Sama_1893	0.17	-1.1
2,308,889	-		Sama_1893	0.17	+3.9
2,308,911	+		Sama_1893	0.19	+0.4
2,308,911	+		Sama_1893	0.19	-1.8
2,308,912	-		Sama_1893	0.20	-1.9
2,308,912	-		Sama_1893	0.20	-0.7
2,308,928	+		Sama_1893	0.21	+0.4
2,308,928	+		Sama_1893	0.21	-2.8
2,308,929	-		Sama_1893	0.21	+1.0
2,308,929	-		Sama_1893	0.21	-0.0
2,308,970	+		Sama_1893	0.25	+3.2
2,308,970	+		Sama_1893	0.25	-1.5
2,308,998	+		Sama_1893	0.28	+0.3
2,308,999	-		Sama_1893	0.28	+0.0
2,309,070	+		Sama_1893	0.35	-0.8
2,309,071	-		Sama_1893	0.35	-1.2
2,309,110	+		Sama_1893	0.39	-0.7
2,309,111	-		Sama_1893	0.39	-1.8
2,309,111	-		Sama_1893	0.39	-1.5
2,309,111	-		Sama_1893	0.39	-1.9
2,309,137	+		Sama_1893	0.42	-1.0
2,309,137	+		Sama_1893	0.42	+3.1