Strain Fitness in Shewanella amazonensis SB2B around Sama_0820

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
1,002,594	+		Sama_0818	0.29	+0.0
1,002,594	+		Sama_0818	0.29	-1.3
1,002,595	-		Sama_0818	0.30	+0.8
1,002,611	+		Sama_0818	0.32	+0.5
1,002,612	-		Sama_0818	0.33	-1.6
1,002,627	+		Sama_0818	0.35	+4.1
1,002,627	+		Sama_0818	0.35	-0.3
1,002,628	-		Sama_0818	0.36	-0.0
1,002,981	+				-0.6
1,002,982	-				-1.1
1,002,987	+				+0.6
1,002,987	+				-0.4
1,002,987	+				+1.3
1,002,987	+				-1.7
1,002,987	+				-1.9
1,002,988	-				+2.9
1,002,990	+				+0.3
1,002,990	+				-0.2
1,002,990	+				+0.4
1,002,990	+				-0.8
1,002,990	+				+0.3
1,002,991	-				-0.5
1,002,991	-				-0.6
1,003,031	-		Sama_0819	0.11	+5.3
1,003,073	-		Sama_0819	0.20	-0.5
1,003,105	+		Sama_0819	0.26	-1.5
1,003,106	-		Sama_0819	0.26	+1.5
1,003,153	+		Sama_0819	0.35	+0.5
1,003,153	+		Sama_0819	0.35	+0.8
1,003,153	+		Sama_0819	0.35	-0.9
1,003,153	+		Sama_0819	0.35	+0.7
1,003,154	-		Sama_0819	0.35	+2.3
1,003,154	-		Sama_0819	0.35	-1.1
1,003,285	+		Sama_0819	0.60	-0.7
1,003,285	+		Sama_0819	0.60	+0.8
1,003,342	+		Sama_0819	0.71	+4.6
1,003,343	-		Sama_0819	0.71	-0.2
1,003,343	-		Sama_0819	0.71	+2.0
1,003,343	-		Sama_0819	0.71	+0.4
1,003,356	+		Sama_0819	0.74	+3.3
1,003,356	+		Sama_0819	0.74	+1.1
1,003,356	+		Sama_0819	0.74	-1.7
1,003,357	-		Sama_0819	0.74	+2.0
1,003,357	-		Sama_0819	0.74	-0.8
1,003,357	-		Sama_0819	0.74	+1.4
1,003,397	+		Sama_0819	0.82	-0.4
1,003,398	-		Sama_0819	0.82	-0.4
1,003,398	-		Sama_0819	0.82	-0.1
1,003,424	-		Sama_0819	0.87	-0.7
1,003,424	-		Sama_0819	0.87	-1.6
1,003,424	-		Sama_0819	0.87	-2.0
1,003,441	+				+4.7
1,003,499	+				-0.2
1,003,499	+				-0.9
1,003,500	-				-0.2
1,003,500	-				-0.9
1,003,500	-				-1.6
1,003,500	-				-2.0
1,003,502	+				-0.4
1,003,502	+				-2.6
1,003,502	+				-0.2
1,003,503	-				-1.9
1,003,503	-				-1.8
1,003,503	-				-0.9
1,003,503	-				-3.5
1,003,565	+				-1.1
1,003,565	+				-2.0
1,003,566	-				-1.8
1,003,583	+				-0.6
1,003,609	-				-1.9
1,003,609	-				-1.2
1,003,617	+				-1.2
1,003,618	-				-2.5
1,003,622	-				+4.5
1,003,731	+		Sama_0820	0.19	+1.6
1,003,731	+		Sama_0820	0.19	-0.1
1,003,732	-		Sama_0820	0.19	-1.8
1,003,839	+		Sama_0820	0.33	+2.0
1,003,860	+		Sama_0820	0.36	-1.5
1,003,860	+		Sama_0820	0.36	-2.4
1,003,861	-		Sama_0820	0.36	-0.2
1,003,861	-		Sama_0820	0.36	-1.8
1,003,861	-		Sama_0820	0.36	+0.7
1,003,861	-		Sama_0820	0.36	+0.6
1,003,861	-		Sama_0820	0.36	+1.7
1,003,861	-		Sama_0820	0.36	-0.0
1,003,861	-		Sama_0820	0.36	-1.9
1,003,864	+		Sama_0820	0.36	-1.2
1,003,864	+		Sama_0820	0.36	-0.4
1,003,864	+		Sama_0820	0.36	-0.7
1,003,864	+		Sama_0820	0.36	-1.8
1,003,864	+		Sama_0820	0.36	-2.0
1,003,865	-		Sama_0820	0.36	-1.5
1,003,865	-		Sama_0820	0.36	+5.7
1,003,865	-		Sama_0820	0.36	-0.7
1,003,865	-		Sama_0820	0.36	-1.2
1,003,865	-		Sama_0820	0.36	+0.1
1,003,865	-		Sama_0820	0.36	+1.1
1,003,865	-		Sama_0820	0.36	-1.0
1,003,865	-		Sama_0820	0.36	+0.1
1,003,893	+		Sama_0820	0.40	-1.3
1,003,894	-		Sama_0820	0.40	-0.2
1,003,938	+		Sama_0820	0.46	-1.5
1,003,962	+		Sama_0820	0.49	-1.5
1,004,043	+		Sama_0820	0.59	-0.7
1,004,044	-		Sama_0820	0.59	+3.2
1,004,044	-		Sama_0820	0.59	-2.0
1,004,063	+		Sama_0820	0.62	+0.4
1,004,063	+		Sama_0820	0.62	-0.7
1,004,064	-		Sama_0820	0.62	-2.1
1,004,114	+		Sama_0820	0.68	+0.4
1,004,114	+		Sama_0820	0.68	+1.1
1,004,114	+		Sama_0820	0.68	-1.6
1,004,115	-		Sama_0820	0.69	+4.3
1,004,115	-		Sama_0820	0.69	-0.8
1,004,115	-		Sama_0820	0.69	+2.6
1,004,115	-		Sama_0820	0.69	+1.3
1,004,115	-		Sama_0820	0.69	+5.7
1,004,122	-		Sama_0820	0.69	-2.3
1,004,122	-		Sama_0820	0.69	+3.2
1,004,122	-		Sama_0820	0.69	+4.3
1,004,171	+		Sama_0820	0.76	-0.1
1,004,171	+		Sama_0820	0.76	-1.2
1,004,171	+		Sama_0820	0.76	+0.2
1,004,172	-		Sama_0820	0.76	-0.6
1,004,172	-		Sama_0820	0.76	-1.0
1,004,172	-		Sama_0820	0.76	-0.4
1,004,172	-		Sama_0820	0.76	-0.4
1,004,172	-		Sama_0820	0.76	-0.4
1,004,172	-		Sama_0820	0.76	+0.2
1,004,175	+		Sama_0820	0.76	+0.9
1,004,175	+		Sama_0820	0.76	+0.7
1,004,175	+		Sama_0820	0.76	-1.6
1,004,175	+		Sama_0820	0.76	-1.0
1,004,175	+		Sama_0820	0.76	-1.4
1,004,175	+		Sama_0820	0.76	-0.5
1,004,175	+		Sama_0820	0.76	-1.0
1,004,175	+		Sama_0820	0.76	+2.8
1,004,176	-		Sama_0820	0.76	-0.8
1,004,191	+		Sama_0820	0.78	+0.0
1,004,191	+		Sama_0820	0.78	+0.8
1,004,191	+		Sama_0820	0.78	+1.9
1,004,191	+		Sama_0820	0.78	-0.3
1,004,192	-		Sama_0820	0.79	-0.5
1,004,202	+		Sama_0820	0.80	-0.5
1,004,203	-		Sama_0820	0.80	+2.0
1,004,203	-		Sama_0820	0.80	-0.4
1,004,203	-		Sama_0820	0.80	-0.9
1,004,203	-		Sama_0820	0.80	-1.6
1,004,203	-		Sama_0820	0.80	-0.7
1,004,258	-		Sama_0820	0.87	-0.3
1,004,258	-		Sama_0820	0.87	+3.4
1,004,258	-		Sama_0820	0.87	+0.6
1,004,258	-		Sama_0820	0.87	+5.4
1,004,321	-				-0.5
1,004,321	-				-0.2
1,004,378	-				-0.7
1,004,381	+				+0.5
1,004,399	-				-0.6
1,004,399	-				+1.6
1,004,406	+				-0.7
1,004,416	+				-0.4
1,004,444	+				+0.9
1,004,556	+				-0.7
1,004,568	+				+0.7
1,004,569	-				-1.8
1,004,569	-				-1.2
1,004,569	-				-1.0
1,004,569	-				-0.2
1,004,581	+				+3.4
1,004,588	+				+0.0
1,004,588	+				+2.1
1,004,588	+				-0.6
1,004,588	+				-0.4
1,004,588	+				+0.3
1,004,589	-				+0.1
1,004,589	-				-0.0
1,004,589	-				-0.7
1,004,609	+				-1.8
1,004,610	-				-1.3
1,004,610	-				-0.2
1,004,626	+				-0.0
1,004,627	-				+0.0
1,004,675	+		Sama_0821	0.19	+0.5
1,004,675	+		Sama_0821	0.19	-1.4
1,004,676	-		Sama_0821	0.19	-1.2
1,004,676	-		Sama_0821	0.19	-1.2
1,004,678	+		Sama_0821	0.20	+0.9
1,004,678	+		Sama_0821	0.20	-0.4
1,004,678	+		Sama_0821	0.20	-2.0
1,004,678	+		Sama_0821	0.20	+0.0
1,004,678	+		Sama_0821	0.20	-0.3
1,004,678	+		Sama_0821	0.20	+3.3
1,004,679	-		Sama_0821	0.20	-1.0
1,004,679	-		Sama_0821	0.20	+0.1
1,004,679	-		Sama_0821	0.20	+0.4
1,004,679	-		Sama_0821	0.20	-0.2
1,004,679	-		Sama_0821	0.20	-1.6
1,004,679	-		Sama_0821	0.20	+0.0
1,004,679	-		Sama_0821	0.20	-2.3
1,004,681	+		Sama_0821	0.21	+3.1
1,004,681	+		Sama_0821	0.21	-1.0
1,004,681	+		Sama_0821	0.21	+3.2
1,004,681	+		Sama_0821	0.21	-2.3
1,004,681	+		Sama_0821	0.21	+4.4
1,004,682	-		Sama_0821	0.21	-1.2
1,004,682	-		Sama_0821	0.21	-0.4
1,004,682	-		Sama_0821	0.21	+1.8
1,004,688	+		Sama_0821	0.23	-0.2
1,004,761	+		Sama_0821	0.45	-1.0
1,004,761	+		Sama_0821	0.45	-0.9
1,004,801	+		Sama_0821	0.56	-0.4
1,004,822	+		Sama_0821	0.63	+1.1
1,004,823	-		Sama_0821	0.63	-3.1
1,004,823	-		Sama_0821	0.63	-1.4
1,004,856	+		Sama_0821	0.73	+0.7
1,004,856	+		Sama_0821	0.73	+0.6
1,004,857	-		Sama_0821	0.73	-2.1
1,004,857	-		Sama_0821	0.73	-1.3
1,004,879	+		Sama_0821	0.79	+0.2
1,004,879	+		Sama_0821	0.79	-2.6
1,004,879	+		Sama_0821	0.79	-3.4
1,004,879	+		Sama_0821	0.79	-0.9
1,004,880	-		Sama_0821	0.80	-0.2
1,004,880	-		Sama_0821	0.80	+0.8
1,004,880	-		Sama_0821	0.80	+0.2
1,004,880	-		Sama_0821	0.80	-0.4
1,005,030	+				-1.5
1,005,031	-				+0.5
1,005,031	-				-0.6
1,005,031	-				-1.2
1,005,031	-				-2.4
1,005,031	-				-0.4
1,005,031	-				+0.8
1,005,038	+				-0.3
1,005,038	+				+0.9
1,005,038	+				+1.3
1,005,038	+				-2.4
1,005,038	+				+1.4
1,005,039	-				+0.3
1,005,039	-				-0.3
1,005,040	+				+2.9
1,005,040	+				-0.6
1,005,041	-				+0.7
1,005,041	-				-2.6
1,005,041	-				-1.3
1,005,041	-				+0.1
1,005,125	+				-2.4
1,005,141	+				+2.1
1,005,142	-				-0.3
1,005,142	-				-0.1
1,005,142	-				+0.3
1,005,142	-				+0.6
1,005,142	-				+3.9
1,005,142	-				-2.4
1,005,144	+				-1.6
1,005,144	+				-1.2
1,005,144	+				-0.7
1,005,144	+				+1.1
1,005,145	-				-0.8
1,005,182	+				+3.2
1,005,183	-				+2.0
1,005,183	-				-0.1
1,005,205	+				-0.4
1,005,205	+				-1.8
1,005,205	+				+5.3
1,005,205	+				-0.7
1,005,205	+				-2.0
1,005,206	-				+1.6
1,005,206	-				+0.8
1,005,206	-				-1.0
1,005,206	-				+0.2
1,005,206	-				-2.1
1,005,206	-				+1.5
1,005,273	+				-1.0
1,005,273	+				-3.2
1,005,273	+				-1.8
1,005,274	-				+0.4
1,005,357	+		Sama_0822	0.15	-1.1
1,005,358	-		Sama_0822	0.16	-0.4
1,005,358	-		Sama_0822	0.16	-1.4