Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0483 and Sama_0484 are separated by 171 nucleotides Sama_0484 and Sama_0485 are separated by 3 nucleotides
Sama_0483: Sama_0483 - hypothetical protein (RefSeq), at 594,438 to 595,316
_0483
Sama_0484: Sama_0484 - hypothetical protein (RefSeq), at 595,488 to 595,727
_0484
Sama_0485: Sama_0485 - MiaB-like putative RNA modifying enzyme YliG (RefSeq), at 595,731 to 597,212
_0485
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.523 kb on - strand at 594.523 kb on - strand at 594.523 kb on - strand at 594.538 kb on + strand, within Sama_0483 at 594.547 kb on - strand, within Sama_0483 at 594.583 kb on - strand, within Sama_0483 at 594.583 kb on - strand, within Sama_0483 at 594.602 kb on + strand, within Sama_0483 at 594.602 kb on + strand, within Sama_0483 at 594.602 kb on + strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.616 kb on - strand, within Sama_0483 at 594.720 kb on - strand, within Sama_0483 at 594.752 kb on + strand, within Sama_0483 at 594.752 kb on + strand, within Sama_0483 at 594.781 kb on + strand, within Sama_0483 at 594.781 kb on + strand, within Sama_0483 at 594.781 kb on + strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.784 kb on + strand, within Sama_0483 at 594.794 kb on + strand, within Sama_0483 at 594.805 kb on + strand, within Sama_0483 at 594.806 kb on - strand, within Sama_0483 at 594.809 kb on + strand, within Sama_0483 at 594.810 kb on - strand, within Sama_0483 at 594.810 kb on - strand, within Sama_0483 at 594.810 kb on - strand, within Sama_0483 at 594.842 kb on + strand, within Sama_0483 at 594.843 kb on - strand, within Sama_0483 at 594.914 kb on - strand, within Sama_0483 at 594.914 kb on - strand, within Sama_0483 at 594.971 kb on + strand, within Sama_0483 at 594.971 kb on + strand, within Sama_0483 at 594.974 kb on + strand, within Sama_0483 at 595.004 kb on + strand, within Sama_0483 at 595.004 kb on + strand, within Sama_0483 at 595.004 kb on + strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.006 kb on + strand, within Sama_0483 at 595.006 kb on + strand, within Sama_0483 at 595.007 kb on - strand, within Sama_0483 at 595.007 kb on - strand, within Sama_0483 at 595.042 kb on + strand, within Sama_0483 at 595.042 kb on + strand, within Sama_0483 at 595.042 kb on + strand, within Sama_0483 at 595.043 kb on - strand, within Sama_0483 at 595.061 kb on + strand, within Sama_0483 at 595.079 kb on - strand, within Sama_0483 at 595.079 kb on - strand, within Sama_0483 at 595.112 kb on + strand, within Sama_0483 at 595.113 kb on - strand, within Sama_0483 at 595.113 kb on - strand, within Sama_0483 at 595.137 kb on + strand, within Sama_0483 at 595.220 kb on + strand, within Sama_0483 at 595.220 kb on + strand, within Sama_0483 at 595.221 kb on - strand, within Sama_0483 at 595.222 kb on + strand, within Sama_0483 at 595.222 kb on + strand, within Sama_0483 at 595.302 kb on + strand at 595.303 kb on - strand at 595.318 kb on + strand at 595.318 kb on + strand at 595.363 kb on + strand at 595.451 kb on + strand at 595.452 kb on - strand at 595.452 kb on - strand at 595.452 kb on - strand at 595.469 kb on - strand at 595.483 kb on + strand at 595.483 kb on + strand at 595.483 kb on + strand at 595.483 kb on + strand at 595.483 kb on + strand at 595.483 kb on + strand at 595.483 kb on + strand at 595.484 kb on - strand at 595.484 kb on - strand at 595.484 kb on - strand at 595.484 kb on - strand at 595.484 kb on - strand at 595.493 kb on + strand at 595.494 kb on - strand at 595.494 kb on - strand at 595.523 kb on - strand, within Sama_0484 at 595.523 kb on - strand, within Sama_0484 at 595.539 kb on - strand, within Sama_0484 at 595.539 kb on - strand, within Sama_0484 at 595.605 kb on + strand, within Sama_0484 at 595.606 kb on - strand, within Sama_0484 at 595.606 kb on - strand, within Sama_0484 at 595.606 kb on - strand, within Sama_0484 at 595.606 kb on - strand, within Sama_0484 at 595.606 kb on - strand, within Sama_0484 at 595.613 kb on + strand, within Sama_0484 at 595.613 kb on + strand, within Sama_0484 at 595.613 kb on + strand, within Sama_0484 at 595.613 kb on + strand, within Sama_0484 at 595.613 kb on + strand, within Sama_0484 at 595.614 kb on - strand, within Sama_0484 at 595.614 kb on - strand, within Sama_0484 at 595.666 kb on + strand, within Sama_0484 at 595.667 kb on - strand, within Sama_0484 at 595.685 kb on - strand, within Sama_0484 at 595.703 kb on + strand, within Sama_0484 at 595.704 kb on - strand at 595.717 kb on + strand at 595.718 kb on - strand at 595.732 kb on + strand at 595.733 kb on - strand at 595.803 kb on - strand at 595.803 kb on - strand at 595.803 kb on - strand at 595.835 kb on + strand at 595.836 kb on - strand at 595.836 kb on - strand at 595.979 kb on + strand, within Sama_0485 at 595.979 kb on + strand, within Sama_0485 at 595.980 kb on - strand, within Sama_0485 at 595.980 kb on - strand, within Sama_0485 at 595.990 kb on + strand, within Sama_0485 at 595.990 kb on + strand, within Sama_0485 at 595.990 kb on + strand, within Sama_0485 at 595.990 kb on + strand, within Sama_0485 at 595.991 kb on - strand, within Sama_0485 at 595.991 kb on - strand, within Sama_0485 at 595.991 kb on - strand, within Sama_0485 at 595.991 kb on - strand, within Sama_0485 at 596.019 kb on + strand, within Sama_0485 at 596.062 kb on + strand, within Sama_0485 at 596.063 kb on - strand, within Sama_0485 at 596.063 kb on - strand, within Sama_0485 at 596.157 kb on - strand, within Sama_0485 at 596.162 kb on + strand, within Sama_0485 at 596.162 kb on + strand, within Sama_0485 at 596.163 kb on - strand, within Sama_0485 at 596.293 kb on + strand, within Sama_0485 at 596.294 kb on - strand, within Sama_0485 at 596.348 kb on - strand, within Sama_0485 at 596.353 kb on + strand, within Sama_0485 at 596.354 kb on - strand, within Sama_0485 at 596.354 kb on - strand, within Sama_0485 at 596.354 kb on - strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.355 kb on + strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.356 kb on - strand, within Sama_0485 at 596.359 kb on + strand, within Sama_0485 at 596.359 kb on + strand, within Sama_0485 at 596.360 kb on - strand, within Sama_0485 at 596.360 kb on - strand, within Sama_0485 at 596.473 kb on + strand, within Sama_0485 at 596.641 kb on + strand, within Sama_0485 at 596.642 kb on - strand, within Sama_0485 at 596.642 kb on - strand, within Sama_0485 at 596.647 kb on + strand, within Sama_0485 at 596.648 kb on - strand, within Sama_0485 at 596.648 kb on - strand, within Sama_0485 at 596.648 kb on - strand, within Sama_0485 at 596.667 kb on + strand, within Sama_0485 at 596.667 kb on + strand, within Sama_0485 at 596.668 kb on - strand, within Sama_0485 at 596.668 kb on - strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.722 kb on + strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485 at 596.723 kb on - strand, within Sama_0485
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 594,522 + -3.5 594,522 + -0.5 594,522 + -0.8 594,522 + -2.6 594,522 + +3.1 594,522 + -1.2 594,523 - -1.8 594,523 - -0.7 594,523 - +2.1 594,538 + Sama_0483 0.11 +0.3 594,547 - Sama_0483 0.12 -0.3 594,583 - Sama_0483 0.16 +0.2 594,583 - Sama_0483 0.16 -2.0 594,602 + Sama_0483 0.19 -0.5 594,602 + Sama_0483 0.19 -0.7 594,602 + Sama_0483 0.19 -0.2 594,603 - Sama_0483 0.19 -0.2 594,603 - Sama_0483 0.19 -1.0 594,603 - Sama_0483 0.19 -1.8 594,603 - Sama_0483 0.19 +2.9 594,616 - Sama_0483 0.20 +1.0 594,720 - Sama_0483 0.32 -1.5 594,752 + Sama_0483 0.36 +0.0 594,752 + Sama_0483 0.36 +0.9 594,781 + Sama_0483 0.39 +0.5 594,781 + Sama_0483 0.39 +0.3 594,781 + Sama_0483 0.39 -1.0 594,782 - Sama_0483 0.39 +1.5 594,782 - Sama_0483 0.39 +0.3 594,782 - Sama_0483 0.39 -0.1 594,782 - Sama_0483 0.39 -2.0 594,782 - Sama_0483 0.39 +0.4 594,782 - Sama_0483 0.39 +1.1 594,782 - Sama_0483 0.39 -1.2 594,782 - Sama_0483 0.39 -1.5 594,782 - Sama_0483 0.39 +0.5 594,784 + Sama_0483 0.39 +5.5 594,794 + Sama_0483 0.41 +1.0 594,805 + Sama_0483 0.42 -0.6 594,806 - Sama_0483 0.42 +0.2 594,809 + Sama_0483 0.42 -1.0 594,810 - Sama_0483 0.42 +1.3 594,810 - Sama_0483 0.42 +2.2 594,810 - Sama_0483 0.42 +2.3 594,842 + Sama_0483 0.46 -0.2 594,843 - Sama_0483 0.46 -1.7 594,914 - Sama_0483 0.54 +3.2 594,914 - Sama_0483 0.54 -0.2 594,971 + Sama_0483 0.61 -1.2 594,971 + Sama_0483 0.61 +2.4 594,974 + Sama_0483 0.61 -0.0 595,004 + Sama_0483 0.64 -0.2 595,004 + Sama_0483 0.64 +0.2 595,004 + Sama_0483 0.64 +0.8 595,005 - Sama_0483 0.65 -0.2 595,005 - Sama_0483 0.65 +1.5 595,005 - Sama_0483 0.65 +1.2 595,005 - Sama_0483 0.65 +1.9 595,006 + Sama_0483 0.65 -0.3 595,006 + Sama_0483 0.65 +2.1 595,007 - Sama_0483 0.65 -0.1 595,007 - Sama_0483 0.65 -1.0 595,042 + Sama_0483 0.69 +0.1 595,042 + Sama_0483 0.69 -2.2 595,042 + Sama_0483 0.69 +2.6 595,043 - Sama_0483 0.69 +0.0 595,061 + Sama_0483 0.71 +0.3 595,079 - Sama_0483 0.73 -0.8 595,079 - Sama_0483 0.73 -2.6 595,112 + Sama_0483 0.77 +1.1 595,113 - Sama_0483 0.77 -1.0 595,113 - Sama_0483 0.77 +2.2 595,137 + Sama_0483 0.80 -2.6 595,220 + Sama_0483 0.89 +0.6 595,220 + Sama_0483 0.89 -0.6 595,221 - Sama_0483 0.89 -0.3 595,222 + Sama_0483 0.89 +0.5 595,222 + Sama_0483 0.89 -0.5 595,302 + +0.8 595,303 - +0.5 595,318 + +0.5 595,318 + +2.3 595,363 + +1.5 595,451 + -2.1 595,452 - +3.2 595,452 - +1.7 595,452 - +0.7 595,469 - +1.3 595,483 + +1.8 595,483 + -0.7 595,483 + -0.2 595,483 + -0.2 595,483 + +1.3 595,483 + -0.6 595,483 + -0.6 595,484 - +0.3 595,484 - -1.3 595,484 - +1.7 595,484 - +4.1 595,484 - +0.0 595,493 + -0.4 595,494 - +2.9 595,494 - -2.0 595,523 - Sama_0484 0.15 +3.0 595,523 - Sama_0484 0.15 -2.1 595,539 - Sama_0484 0.21 +1.0 595,539 - Sama_0484 0.21 -0.4 595,605 + Sama_0484 0.49 -0.5 595,606 - Sama_0484 0.49 -1.0 595,606 - Sama_0484 0.49 -0.5 595,606 - Sama_0484 0.49 -2.2 595,606 - Sama_0484 0.49 +1.6 595,606 - Sama_0484 0.49 +1.1 595,613 + Sama_0484 0.52 +0.9 595,613 + Sama_0484 0.52 -1.4 595,613 + Sama_0484 0.52 -0.6 595,613 + Sama_0484 0.52 +0.7 595,613 + Sama_0484 0.52 -2.5 595,614 - Sama_0484 0.53 -1.4 595,614 - Sama_0484 0.53 -0.3 595,666 + Sama_0484 0.74 -2.0 595,667 - Sama_0484 0.75 -1.4 595,685 - Sama_0484 0.82 -2.7 595,703 + Sama_0484 0.90 -0.8 595,704 - +0.4 595,717 + +0.4 595,718 - +1.6 595,732 + -1.3 595,733 - -1.8 595,803 - -1.1 595,803 - +0.1 595,803 - +0.9 595,835 + +5.8 595,836 - -1.7 595,836 - -1.2 595,979 + Sama_0485 0.17 +0.8 595,979 + Sama_0485 0.17 -0.8 595,980 - Sama_0485 0.17 +0.3 595,980 - Sama_0485 0.17 -0.7 595,990 + Sama_0485 0.17 -1.6 595,990 + Sama_0485 0.17 +1.9 595,990 + Sama_0485 0.17 -0.1 595,990 + Sama_0485 0.17 +3.3 595,991 - Sama_0485 0.18 -1.6 595,991 - Sama_0485 0.18 -0.3 595,991 - Sama_0485 0.18 +1.4 595,991 - Sama_0485 0.18 -1.6 596,019 + Sama_0485 0.19 -0.4 596,062 + Sama_0485 0.22 +1.6 596,063 - Sama_0485 0.22 +3.4 596,063 - Sama_0485 0.22 +3.6 596,157 - Sama_0485 0.29 -0.6 596,162 + Sama_0485 0.29 +1.8 596,162 + Sama_0485 0.29 +0.9 596,163 - Sama_0485 0.29 -1.0 596,293 + Sama_0485 0.38 -0.8 596,294 - Sama_0485 0.38 +0.9 596,348 - Sama_0485 0.42 +0.5 596,353 + Sama_0485 0.42 +2.9 596,354 - Sama_0485 0.42 -0.3 596,354 - Sama_0485 0.42 +0.5 596,354 - Sama_0485 0.42 -0.8 596,355 + Sama_0485 0.42 -0.9 596,355 + Sama_0485 0.42 +2.0 596,355 + Sama_0485 0.42 +1.3 596,355 + Sama_0485 0.42 -0.3 596,355 + Sama_0485 0.42 +0.3 596,355 + Sama_0485 0.42 +0.2 596,355 + Sama_0485 0.42 -1.8 596,355 + Sama_0485 0.42 -0.9 596,355 + Sama_0485 0.42 -1.5 596,355 + Sama_0485 0.42 +1.1 596,355 + Sama_0485 0.42 -0.9 596,355 + Sama_0485 0.42 +1.1 596,355 + Sama_0485 0.42 -0.5 596,355 + Sama_0485 0.42 -1.6 596,356 - Sama_0485 0.42 -0.5 596,356 - Sama_0485 0.42 -2.0 596,356 - Sama_0485 0.42 +0.5 596,356 - Sama_0485 0.42 -0.3 596,356 - Sama_0485 0.42 -2.6 596,356 - Sama_0485 0.42 -0.1 596,356 - Sama_0485 0.42 +0.1 596,356 - Sama_0485 0.42 +2.1 596,356 - Sama_0485 0.42 -1.4 596,356 - Sama_0485 0.42 -0.2 596,356 - Sama_0485 0.42 +1.4 596,356 - Sama_0485 0.42 +0.3 596,356 - Sama_0485 0.42 +1.3 596,356 - Sama_0485 0.42 +4.2 596,356 - Sama_0485 0.42 +0.8 596,356 - Sama_0485 0.42 -0.5 596,356 - Sama_0485 0.42 -0.5 596,356 - Sama_0485 0.42 +2.6 596,356 - Sama_0485 0.42 -2.4 596,356 - Sama_0485 0.42 +0.7 596,356 - Sama_0485 0.42 -0.0 596,356 - Sama_0485 0.42 +0.7 596,356 - Sama_0485 0.42 +0.8 596,359 + Sama_0485 0.42 +2.1 596,359 + Sama_0485 0.42 -2.7 596,360 - Sama_0485 0.42 -0.4 596,360 - Sama_0485 0.42 +4.1 596,473 + Sama_0485 0.50 -0.1 596,641 + Sama_0485 0.61 +2.0 596,642 - Sama_0485 0.61 -2.3 596,642 - Sama_0485 0.61 -0.7 596,647 + Sama_0485 0.62 -2.5 596,648 - Sama_0485 0.62 -0.7 596,648 - Sama_0485 0.62 -0.9 596,648 - Sama_0485 0.62 +2.3 596,667 + Sama_0485 0.63 +0.6 596,667 + Sama_0485 0.63 -1.8 596,668 - Sama_0485 0.63 -1.6 596,668 - Sama_0485 0.63 -1.5 596,722 + Sama_0485 0.67 -1.2 596,722 + Sama_0485 0.67 +1.1 596,722 + Sama_0485 0.67 +0.6 596,722 + Sama_0485 0.67 -0.8 596,722 + Sama_0485 0.67 -2.3 596,722 + Sama_0485 0.67 +2.9 596,723 - Sama_0485 0.67 -2.6 596,723 - Sama_0485 0.67 -1.9 596,723 - Sama_0485 0.67 +0.5 596,723 - Sama_0485 0.67 -0.1 596,723 - Sama_0485 0.67 +1.1 596,723 - Sama_0485 0.67 -1.5 596,723 - Sama_0485 0.67 +1.2 596,723 - Sama_0485 0.67 +0.9 596,723 - Sama_0485 0.67 +0.6
Or see this region's nucleotide sequence