Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1905

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
1,988,293	-		Dshi_1904	0.72	+0.3
1,988,367	-		Dshi_1904	0.77	-0.3
1,988,371	+		Dshi_1904	0.78	-0.4
1,988,379	-		Dshi_1904	0.78	+0.8
1,988,410	+		Dshi_1904	0.81	-0.8
1,988,419	+		Dshi_1904	0.81	+0.1
1,988,481	+		Dshi_1904	0.86	-0.6
1,988,489	-		Dshi_1904	0.87	-0.9
1,988,510	+		Dshi_1904	0.88	-0.3
1,988,512	+		Dshi_1904	0.88	+0.8
1,988,550	-				+1.9
1,988,572	-				+0.7
1,988,607	-				-1.3
1,988,617	-				-0.3
1,988,617	-				-1.4
1,988,624	+				-0.0
1,988,630	-				-0.5
1,988,665	-				-0.8
1,988,737	-				-0.3
1,988,769	-				+0.2
1,988,779	+				-0.2
1,988,787	-				+0.1
1,988,806	+				-0.7
1,988,806	+				-0.4
1,988,806	+				+0.1
1,988,811	+				+0.1
1,988,824	+				-0.5
1,988,824	+				-0.3
1,988,832	-				-0.5
1,988,832	-				-1.5
1,988,832	-				-0.8
1,988,861	+				+0.6
1,988,920	+				-0.6
1,988,920	+				+0.5
1,988,931	+				-1.2
1,988,976	+				-3.2
1,989,269	+				+0.2
1,989,303	+				-0.4
1,989,303	+				+1.2
1,989,344	-				-0.7
1,989,384	-		Dshi_1905	0.10	+0.2
1,989,400	+		Dshi_1905	0.12	-0.0
1,989,408	+		Dshi_1905	0.12	-0.8
1,989,444	+		Dshi_1905	0.16	-0.9
1,989,447	-		Dshi_1905	0.16	+0.2
1,989,460	+		Dshi_1905	0.17	+0.1
1,989,460	+		Dshi_1905	0.17	-0.6
1,989,461	+		Dshi_1905	0.17	-0.3
1,989,531	+		Dshi_1905	0.24	+0.4
1,989,572	+		Dshi_1905	0.27	-0.9
1,989,572	+		Dshi_1905	0.27	+1.4
1,989,591	-		Dshi_1905	0.29	+0.1
1,989,645	-		Dshi_1905	0.34	+1.1
1,989,781	-		Dshi_1905	0.46	-0.3
1,989,831	+		Dshi_1905	0.51	-0.3
1,989,838	+		Dshi_1905	0.51	-0.6
1,989,864	-		Dshi_1905	0.54	-0.1
1,989,868	+		Dshi_1905	0.54	-1.0
1,989,876	-		Dshi_1905	0.55	-0.7
1,989,892	+		Dshi_1905	0.56	-0.6
1,989,919	+		Dshi_1905	0.59	-0.5
1,989,919	+		Dshi_1905	0.59	-0.2
1,989,927	-		Dshi_1905	0.59	-0.7
1,989,927	-		Dshi_1905	0.59	+0.2
1,989,927	-		Dshi_1905	0.59	+0.2
1,989,927	-		Dshi_1905	0.59	+0.5
1,989,927	-		Dshi_1905	0.59	+0.7
1,989,927	-		Dshi_1905	0.59	-1.0
1,989,929	+		Dshi_1905	0.60	-1.0
1,989,929	+		Dshi_1905	0.60	+1.1
1,989,929	+		Dshi_1905	0.60	-0.1
1,989,932	-		Dshi_1905	0.60	-0.1
1,989,932	-		Dshi_1905	0.60	-0.6
1,989,933	+		Dshi_1905	0.60	-0.1
1,989,939	-		Dshi_1905	0.61	-0.1
1,989,942	+		Dshi_1905	0.61	-0.2
1,989,955	+		Dshi_1905	0.62	+1.3
1,989,955	+		Dshi_1905	0.62	+0.6
1,989,955	+		Dshi_1905	0.62	-1.3
1,989,955	+		Dshi_1905	0.62	+0.2
1,989,955	+		Dshi_1905	0.62	-0.3
1,989,963	-		Dshi_1905	0.63	-0.8
1,989,963	-		Dshi_1905	0.63	-0.1
1,989,963	-		Dshi_1905	0.63	+2.2
1,989,977	+		Dshi_1905	0.64	+0.1
1,989,993	-		Dshi_1905	0.65	-0.3
1,990,006	+		Dshi_1905	0.67	+0.8
1,990,010	+		Dshi_1905	0.67	+0.5
1,990,012	+		Dshi_1905	0.67	+1.2
1,990,018	-		Dshi_1905	0.68	+0.5
1,990,020	-		Dshi_1905	0.68	-0.5
1,990,022	-		Dshi_1905	0.68	-1.3
1,990,031	-		Dshi_1905	0.69	+1.2
1,990,032	+		Dshi_1905	0.69	+0.0
1,990,041	-		Dshi_1905	0.70	+0.4
1,990,041	-		Dshi_1905	0.70	+0.3
1,990,059	+		Dshi_1905	0.71	-0.0
1,990,067	-		Dshi_1905	0.72	-0.1
1,990,067	-		Dshi_1905	0.72	-0.2
1,990,067	-		Dshi_1905	0.72	-0.5
1,990,067	-		Dshi_1905	0.72	+0.4
1,990,084	+		Dshi_1905	0.74	-0.6
1,990,091	+		Dshi_1905	0.74	-0.3
1,990,091	+		Dshi_1905	0.74	-0.2
1,990,091	+		Dshi_1905	0.74	-0.7
1,990,093	+		Dshi_1905	0.75	-1.1
1,990,098	+		Dshi_1905	0.75	-1.3
1,990,098	-		Dshi_1905	0.75	-2.1
1,990,099	-		Dshi_1905	0.75	-1.3
1,990,099	-		Dshi_1905	0.75	+0.0
1,990,099	-		Dshi_1905	0.75	-0.8
1,990,103	+		Dshi_1905	0.75	-1.4
1,990,105	+		Dshi_1905	0.76	+0.7
1,990,105	+		Dshi_1905	0.76	+0.4
1,990,105	+		Dshi_1905	0.76	+0.9
1,990,105	+		Dshi_1905	0.76	-0.3
1,990,105	+		Dshi_1905	0.76	-0.0
1,990,105	+		Dshi_1905	0.76	-0.6
1,990,105	+		Dshi_1905	0.76	-0.7
1,990,113	-		Dshi_1905	0.76	+0.6
1,990,113	-		Dshi_1905	0.76	-0.6
1,990,113	-		Dshi_1905	0.76	-0.3
1,990,116	+		Dshi_1905	0.77	-0.2
1,990,124	-		Dshi_1905	0.77	-0.5
1,990,124	-		Dshi_1905	0.77	+0.7
1,990,124	-		Dshi_1905	0.77	+0.4
1,990,134	-		Dshi_1905	0.78	-0.4
1,990,142	-		Dshi_1905	0.79	+0.8
1,990,160	+		Dshi_1905	0.81	-1.9
1,990,167	-		Dshi_1905	0.81	-0.3
1,990,178	-		Dshi_1905	0.82	+0.8
1,990,178	-		Dshi_1905	0.82	-0.6
1,990,186	+		Dshi_1905	0.83	+0.7
1,990,186	+		Dshi_1905	0.83	+0.3
1,990,186	+		Dshi_1905	0.83	+0.2
1,990,186	+		Dshi_1905	0.83	-0.2
1,990,186	+		Dshi_1905	0.83	-0.8
1,990,186	+		Dshi_1905	0.83	+0.1
1,990,201	+		Dshi_1905	0.84	+0.2
1,990,205	+		Dshi_1905	0.85	-0.1
1,990,206	+		Dshi_1905	0.85	-0.4
1,990,207	+		Dshi_1905	0.85	-0.1
1,990,256	+		Dshi_1905	0.89	-1.6
1,990,256	+		Dshi_1905	0.89	-0.4
1,990,256	+		Dshi_1905	0.89	+0.8
1,990,263	-				-0.8
1,990,264	-				-0.5
1,990,279	+				-0.7
1,990,279	+				-0.6
1,990,281	-				+0.1
1,990,286	-				+0.8
1,990,287	-				-0.7
1,990,294	-				-0.5
1,990,297	+				+0.2
1,990,297	+				-0.0
1,990,297	+				-0.2
1,990,297	+				-1.1
1,990,297	+				+0.0
1,990,297	+				-0.3
1,990,297	-				-0.2
1,990,297	-				-0.2
1,990,300	-				+0.2
1,990,305	-				-1.3
1,990,305	-				+1.2
1,990,305	-				+0.1
1,990,324	+				-0.3
1,990,329	+				-0.1
1,990,339	+				+1.8
1,990,339	+				-1.7
1,990,345	+				-0.0
1,990,347	-				-0.3
1,990,347	-				-0.4
1,990,347	-				-2.6
1,990,347	-				-0.1
1,990,347	-				-0.3
1,990,353	-				-1.0
1,990,353	-				-0.1
1,990,353	-				-0.1
1,990,381	+				-0.1
1,990,389	-				-0.0
1,990,393	+				-0.3
1,990,399	-				-2.0
1,990,402	+				-0.0
1,990,410	+				+0.7
1,990,415	+				-0.3
1,990,415	+				+0.3
1,990,421	-				+0.6
1,990,423	-				+0.1
1,990,423	-				-0.8
1,990,430	+				-0.3
1,990,432	+				-0.8
1,990,432	+				-0.1
1,990,432	+				-1.5
1,990,438	-				-1.6
1,990,438	-				+0.6
1,990,440	-				+0.3
1,990,451	+				+0.8
1,990,479	+				-0.4
1,990,480	+				-0.2
1,990,486	+				-0.3
1,990,486	-				-0.1
1,990,487	-				-0.4
1,990,491	+				-0.6
1,990,521	+				-0.6
1,990,539	+				-1.0
1,990,539	+				-0.3
1,990,539	+				-0.6
1,990,544	+				-0.5
1,990,544	+				-0.8
1,990,544	+				-1.2
1,990,549	+				-0.5
1,990,552	-				-0.6
1,990,552	-				-0.1
1,990,552	-				-1.0
1,990,552	-				+0.5
1,990,557	-				+0.9
1,990,568	+				-0.1
1,990,596	-		Dshi_1906	0.13	-2.7
1,990,596	-		Dshi_1906	0.13	-0.2
1,990,598	+		Dshi_1906	0.13	+0.5
1,990,618	-		Dshi_1906	0.21	-0.6
1,990,635	+		Dshi_1906	0.27	+0.7
1,990,639	-		Dshi_1906	0.28	-0.6
1,990,656	+		Dshi_1906	0.34	-0.4
1,990,656	-		Dshi_1906	0.34	+0.7
1,990,656	-		Dshi_1906	0.34	+0.5
1,990,695	+		Dshi_1906	0.48	-1.1
1,990,697	+		Dshi_1906	0.49	-0.2
1,990,699	-		Dshi_1906	0.49	-1.1
1,990,704	+		Dshi_1906	0.51	-0.6
1,990,704	+		Dshi_1906	0.51	-1.1
1,990,712	-		Dshi_1906	0.54	-0.5
1,990,719	-		Dshi_1906	0.56	-1.5
1,990,740	-		Dshi_1906	0.64	+0.4
1,990,747	+		Dshi_1906	0.66	-0.5
1,990,750	-		Dshi_1906	0.67	+0.6
1,990,770	+		Dshi_1906	0.74	+0.9
1,990,770	+		Dshi_1906	0.74	-0.1
1,990,770	+		Dshi_1906	0.74	-1.4
1,990,773	-		Dshi_1906	0.76	-1.3
1,990,773	-		Dshi_1906	0.76	-0.1
1,990,778	-		Dshi_1906	0.77	-0.9
1,990,778	-		Dshi_1906	0.77	-2.6
1,990,783	-		Dshi_1906	0.79	-2.1
1,990,812	-		Dshi_1906	0.89	+1.6
1,990,818	+				-0.4
1,990,834	+				-0.6
1,990,835	+				+1.1
1,990,843	-				-0.9
1,990,848	+				+0.1
1,990,848	+				+0.3
1,990,848	+				-0.0
1,990,852	+				-0.6
1,990,854	-				+0.3
1,990,854	-				-0.2
1,990,855	-				-0.4
1,990,856	-				-0.7
1,990,856	-				+0.1
1,990,856	-				+1.8
1,990,856	-				-1.1
1,990,887	+				+1.4
1,990,895	-				+1.0
1,990,904	+				-0.4
1,990,912	-				+0.1
1,990,920	+				+0.4
1,990,921	+				+1.4
1,990,921	+				+0.2
1,990,923	-				+0.0
1,990,947	-				+0.5
1,990,954	+				-0.3
1,990,962	-				-0.2
1,990,963	-				-0.0
1,990,993	-				+0.3
1,990,999	-				-0.1
1,991,001	+				-0.7
1,991,009	-				-1.1
1,991,026	+				-0.7
1,991,026	+				-0.7
1,991,026	+				+0.8
1,991,034	+				-0.3
1,991,034	-				+0.9
1,991,036	+				-1.1
1,991,039	+				+0.0
1,991,061	+				-1.8
1,991,061	+				-0.8
1,991,063	+				+0.5
1,991,067	+				+1.3
1,991,069	-				+0.5
1,991,071	-				+1.2
1,991,073	+				+0.2
1,991,073	+				-0.1
1,991,073	+				+1.0
1,991,073	+				+1.4
1,991,075	-				-0.1
1,991,075	-				+0.0
1,991,079	+				-0.1
1,991,079	+				-0.2
1,991,079	+				+0.3
1,991,079	+				-0.9
1,991,079	+				+0.1
1,991,079	+				-0.2
1,991,079	+				-0.7
1,991,079	+				-1.5
1,991,080	+				+0.1
1,991,081	-				-0.0
1,991,087	-				-0.5
1,991,087	-				+0.2
1,991,087	-				+0.8
1,991,087	-				-0.7
1,991,087	-				+0.2
1,991,087	-				+0.7
1,991,087	-				+0.4
1,991,090	+				-0.0
1,991,098	+				-1.5
1,991,105	+		Dshi_1907	0.10	-1.2
1,991,117	+		Dshi_1907	0.11	+1.2
1,991,124	+		Dshi_1907	0.11	-0.3
1,991,125	+		Dshi_1907	0.12	-0.5
1,991,127	+		Dshi_1907	0.12	+0.3
1,991,127	+		Dshi_1907	0.12	-1.4
1,991,135	-		Dshi_1907	0.12	-0.4
1,991,141	+		Dshi_1907	0.13	-0.1
1,991,142	+		Dshi_1907	0.13	+0.1
1,991,158	-		Dshi_1907	0.14	-2.0
1,991,174	+		Dshi_1907	0.15	+0.2
1,991,177	-		Dshi_1907	0.15	+0.0
1,991,183	+		Dshi_1907	0.16	-0.5
1,991,215	-		Dshi_1907	0.18	-1.7
1,991,241	+		Dshi_1907	0.19	+1.4
1,991,241	+		Dshi_1907	0.19	+0.0
1,991,241	+		Dshi_1907	0.19	-0.7
1,991,241	+		Dshi_1907	0.19	+0.2
1,991,249	-		Dshi_1907	0.20	-0.3
1,991,249	-		Dshi_1907	0.20	-0.6
1,991,285	+		Dshi_1907	0.22	+0.7
1,991,293	+		Dshi_1907	0.23	-0.7
1,991,293	-		Dshi_1907	0.23	-0.2
1,991,293	-		Dshi_1907	0.23	-1.0
1,991,298	+		Dshi_1907	0.23	-0.5
1,991,322	-		Dshi_1907	0.25	+0.4
1,991,328	+		Dshi_1907	0.25	-0.0
1,991,353	+		Dshi_1907	0.27	-0.6