Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0932

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0931 and Dshi_0932 are separated by 13 nucleotidesDshi_0932 and Dshi_0933 overlap by 4 nucleotidesDshi_0933 and Dshi_0934 are separated by 496 nucleotides Dshi_0931: Dshi_0931 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 955,308 to 956,327 _0931 Dshi_0932: Dshi_0932 - ATPase, P-type (transporting), HAD superfamily, subfamily IC (RefSeq), at 956,341 to 959,109 _0932 Dshi_0933: Dshi_0933 - DNA binding domain, excisionase family (RefSeq), at 959,106 to 959,327 _0933 Dshi_0934: Dshi_0934 - transposase IS3/IS911 family protein (RefSeq), at 959,824 to 960,150 _0934 Position (kb) 956 957 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 955.341 kb on + strandat 955.341 kb on + strandat 955.383 kb on + strandat 955.445 kb on + strand, within Dshi_0931at 955.463 kb on + strand, within Dshi_0931at 955.537 kb on - strand, within Dshi_0931at 955.558 kb on - strand, within Dshi_0931at 955.571 kb on + strand, within Dshi_0931at 955.581 kb on - strand, within Dshi_0931at 955.602 kb on - strand, within Dshi_0931at 955.629 kb on - strand, within Dshi_0931at 955.680 kb on - strand, within Dshi_0931at 955.704 kb on + strand, within Dshi_0931at 955.815 kb on + strand, within Dshi_0931at 955.845 kb on - strand, within Dshi_0931at 955.870 kb on + strand, within Dshi_0931at 955.937 kb on - strand, within Dshi_0931at 955.942 kb on + strand, within Dshi_0931at 955.952 kb on - strand, within Dshi_0931at 956.169 kb on - strand, within Dshi_0931at 956.267 kb on + strandat 956.346 kb on + strandat 956.378 kb on - strandat 956.378 kb on - strandat 956.446 kb on + strandat 956.496 kb on + strandat 956.537 kb on + strandat 956.657 kb on + strand, within Dshi_0932at 956.689 kb on - strand, within Dshi_0932at 956.706 kb on - strand, within Dshi_0932at 956.725 kb on + strand, within Dshi_0932at 956.733 kb on - strand, within Dshi_0932at 956.733 kb on - strand, within Dshi_0932at 956.835 kb on - strand, within Dshi_0932at 956.841 kb on - strand, within Dshi_0932at 957.334 kb on - strand, within Dshi_0932at 957.392 kb on - strand, within Dshi_0932at 957.479 kb on + strand, within Dshi_0932at 957.489 kb on + strand, within Dshi_0932at 957.586 kb on - strand, within Dshi_0932at 957.618 kb on + strand, within Dshi_0932at 957.645 kb on + strand, within Dshi_0932at 957.761 kb on + strand, within Dshi_0932at 957.891 kb on + strand, within Dshi_0932at 957.899 kb on - strand, within Dshi_0932at 957.991 kb on + strand, within Dshi_0932at 958.053 kb on - strand, within Dshi_0932at 958.139 kb on + strand, within Dshi_0932at 958.139 kb on + strand, within Dshi_0932at 958.147 kb on - strand, within Dshi_0932at 958.242 kb on - strand, within Dshi_0932at 958.308 kb on + strand, within Dshi_0932at 958.308 kb on + strand, within Dshi_0932at 958.316 kb on - strand, within Dshi_0932at 958.344 kb on + strand, within Dshi_0932at 958.349 kb on + strand, within Dshi_0932at 958.360 kb on + strand, within Dshi_0932at 958.453 kb on - strand, within Dshi_0932at 958.478 kb on - strand, within Dshi_0932at 958.522 kb on + strand, within Dshi_0932at 958.554 kb on - strand, within Dshi_0932at 958.572 kb on + strand, within Dshi_0932at 958.861 kb on + strandat 958.861 kb on + strandat 958.869 kb on - strandat 959.010 kb on - strandat 959.010 kb on - strandat 959.047 kb on - strandat 959.188 kb on - strand, within Dshi_0933at 959.248 kb on + strand, within Dshi_0933at 959.322 kb on + strandat 959.324 kb on + strandat 959.329 kb on + strandat 959.337 kb on - strandat 959.342 kb on - strandat 959.342 kb on - strandat 959.344 kb on - strandat 959.346 kb on - strandat 959.363 kb on + strandat 959.366 kb on - strandat 959.396 kb on - strandat 959.416 kb on - strandat 959.462 kb on + strandat 959.493 kb on + strandat 959.518 kb on - strandat 959.576 kb on - strandat 959.595 kb on + strandat 959.625 kb on - strandat 959.716 kb on - strandat 959.761 kb on + strandat 959.902 kb on - strand, within Dshi_0934at 959.924 kb on + strand, within Dshi_0934at 959.939 kb on + strand, within Dshi_0934at 959.987 kb on + strand, within Dshi_0934at 959.989 kb on + strand, within Dshi_0934

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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955,341 + -2.8
955,341 + +0.3
955,383 + -0.6
955,445 + Dshi_0931 0.13 -0.8
955,463 + Dshi_0931 0.15 -0.4
955,537 - Dshi_0931 0.22 +1.0
955,558 - Dshi_0931 0.25 -0.1
955,571 + Dshi_0931 0.26 -0.6
955,581 - Dshi_0931 0.27 -0.2
955,602 - Dshi_0931 0.29 +0.7
955,629 - Dshi_0931 0.31 +0.3
955,680 - Dshi_0931 0.36 -0.2
955,704 + Dshi_0931 0.39 -1.1
955,815 + Dshi_0931 0.50 +0.1
955,845 - Dshi_0931 0.53 -0.5
955,870 + Dshi_0931 0.55 -1.3
955,937 - Dshi_0931 0.62 +0.2
955,942 + Dshi_0931 0.62 +0.1
955,952 - Dshi_0931 0.63 +0.4
956,169 - Dshi_0931 0.84 +2.0
956,267 + -1.4
956,346 + -0.2
956,378 - -2.7
956,378 - -0.1
956,446 + -0.1
956,496 + -0.5
956,537 + +0.8
956,657 + Dshi_0932 0.11 -0.7
956,689 - Dshi_0932 0.13 +0.5
956,706 - Dshi_0932 0.13 -0.5
956,725 + Dshi_0932 0.14 -0.7
956,733 - Dshi_0932 0.14 +0.1
956,733 - Dshi_0932 0.14 -0.9
956,835 - Dshi_0932 0.18 -1.2
956,841 - Dshi_0932 0.18 -0.8
957,334 - Dshi_0932 0.36 -1.4
957,392 - Dshi_0932 0.38 -0.2
957,479 + Dshi_0932 0.41 -0.4
957,489 + Dshi_0932 0.41 +0.1
957,586 - Dshi_0932 0.45 -0.7
957,618 + Dshi_0932 0.46 -0.4
957,645 + Dshi_0932 0.47 -0.5
957,761 + Dshi_0932 0.51 +0.0
957,891 + Dshi_0932 0.56 -0.5
957,899 - Dshi_0932 0.56 -0.9
957,991 + Dshi_0932 0.60 -0.9
958,053 - Dshi_0932 0.62 +0.5
958,139 + Dshi_0932 0.65 -0.4
958,139 + Dshi_0932 0.65 -1.4
958,147 - Dshi_0932 0.65 -0.9
958,242 - Dshi_0932 0.69 -0.9
958,308 + Dshi_0932 0.71 -1.1
958,308 + Dshi_0932 0.71 -0.4
958,316 - Dshi_0932 0.71 -1.1
958,344 + Dshi_0932 0.72 +0.7
958,349 + Dshi_0932 0.73 -1.5
958,360 + Dshi_0932 0.73 -0.3
958,453 - Dshi_0932 0.76 -0.4
958,478 - Dshi_0932 0.77 +0.3
958,522 + Dshi_0932 0.79 -0.2
958,554 - Dshi_0932 0.80 +0.1
958,572 + Dshi_0932 0.81 +0.2
958,861 + -0.3
958,861 + -0.9
958,869 - -0.3
959,010 - -1.2
959,010 - -0.1
959,047 - -1.8
959,188 - Dshi_0933 0.37 +1.2
959,248 + Dshi_0933 0.64 +0.1
959,322 + -0.9
959,324 + -0.2
959,329 + -1.1
959,337 - -1.4
959,342 - -0.5
959,342 - +0.4
959,344 - +0.7
959,346 - +1.0
959,363 + +0.2
959,366 - +0.2
959,396 - -0.5
959,416 - -0.4
959,462 + -1.0
959,493 + -1.6
959,518 - -1.2
959,576 - +0.2
959,595 + +0.2
959,625 - +0.1
959,716 - -0.5
959,761 + -0.3
959,902 - Dshi_0934 0.24 -0.6
959,924 + Dshi_0934 0.31 -0.0
959,939 + Dshi_0934 0.35 -0.5
959,987 + Dshi_0934 0.50 +0.9
959,989 + Dshi_0934 0.50 +0.3

Or see this region's nucleotide sequence