Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0810 and Dshi_0811 overlap by 20 nucleotides Dshi_0811 and Dshi_0812 are separated by 183 nucleotides Dshi_0812 and Dshi_0813 are separated by 54 nucleotides
Dshi_0810: Dshi_0810 - hypothetical protein (RefSeq), at 820,707 to 820,949
_0810
Dshi_0811: Dshi_0811 - hypothetical protein (RefSeq), at 820,930 to 821,163
_0811
Dshi_0812: Dshi_0812 - transcriptional regulator, TraR/DksA family (RefSeq), at 821,347 to 821,664
_0812
Dshi_0813: Dshi_0813 - hypothetical protein (RefSeq), at 821,719 to 821,967
_0813
Position (kb) 820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.714 kb on + strand at 819.714 kb on + strand at 819.721 kb on + strand at 819.726 kb on - strand at 819.727 kb on + strand at 819.727 kb on + strand at 819.729 kb on - strand at 819.743 kb on - strand at 819.748 kb on - strand at 819.748 kb on - strand at 819.750 kb on + strand at 819.754 kb on - strand at 819.761 kb on + strand at 819.777 kb on + strand at 819.781 kb on + strand at 819.781 kb on + strand at 819.782 kb on + strand at 819.782 kb on + strand at 819.786 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on - strand at 819.789 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.818 kb on + strand at 819.819 kb on - strand at 819.836 kb on + strand at 819.836 kb on - strand at 819.839 kb on + strand at 819.839 kb on + strand at 819.845 kb on + strand at 819.847 kb on - strand at 819.847 kb on - strand at 819.863 kb on - strand at 819.863 kb on - strand at 819.873 kb on + strand at 819.873 kb on + strand at 819.874 kb on + strand at 819.874 kb on + strand at 819.881 kb on - strand at 819.881 kb on - strand at 819.882 kb on - strand at 819.882 kb on - strand at 819.886 kb on - strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.896 kb on + strand at 819.900 kb on + strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.905 kb on + strand at 819.905 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.912 kb on + strand at 819.913 kb on - strand at 819.913 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.920 kb on - strand at 819.920 kb on - strand at 819.934 kb on - strand at 819.935 kb on + strand at 819.940 kb on + strand at 819.960 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.988 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.991 kb on + strand at 819.999 kb on - strand at 820.027 kb on - strand at 820.027 kb on - strand at 820.029 kb on - strand at 820.038 kb on + strand at 820.090 kb on - strand at 820.097 kb on + strand at 820.098 kb on + strand at 820.098 kb on + strand at 820.105 kb on - strand at 820.108 kb on + strand at 820.108 kb on + strand at 820.110 kb on + strand at 820.116 kb on - strand at 820.130 kb on - strand at 820.170 kb on + strand at 820.170 kb on - strand at 820.200 kb on - strand at 820.209 kb on + strand at 820.217 kb on - strand at 820.219 kb on + strand at 820.219 kb on - strand at 820.227 kb on - strand at 820.240 kb on + strand at 820.248 kb on - strand at 820.258 kb on - strand at 820.266 kb on + strand at 820.266 kb on + strand at 820.274 kb on - strand at 820.289 kb on - strand at 820.291 kb on + strand at 820.299 kb on - strand at 820.333 kb on - strand at 820.346 kb on + strand at 820.359 kb on + strand at 820.383 kb on + strand at 820.397 kb on - strand at 820.425 kb on + strand at 820.431 kb on + strand at 820.433 kb on - strand at 820.433 kb on - strand at 820.433 kb on - strand at 820.433 kb on - strand at 820.435 kb on - strand at 820.436 kb on + strand at 820.444 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.460 kb on + strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.463 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.471 kb on + strand at 820.472 kb on - strand at 820.474 kb on - strand at 820.479 kb on - strand at 820.479 kb on - strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.484 kb on + strand at 820.488 kb on + strand at 820.488 kb on + strand at 820.491 kb on - strand at 820.491 kb on - strand at 820.491 kb on - strand at 820.524 kb on + strand at 820.526 kb on + strand at 820.527 kb on - strand at 820.533 kb on - strand at 820.540 kb on - strand at 820.540 kb on - strand at 820.546 kb on - strand at 820.578 kb on + strand at 820.583 kb on + strand at 820.588 kb on + strand at 820.588 kb on + strand at 820.591 kb on - strand at 820.591 kb on - strand at 820.591 kb on - strand at 820.596 kb on - strand at 820.601 kb on - strand at 820.608 kb on - strand at 820.613 kb on - strand at 820.627 kb on - strand at 820.630 kb on + strand at 820.654 kb on + strand at 820.656 kb on - strand at 820.659 kb on + strand at 820.668 kb on + strand at 820.676 kb on - strand at 820.697 kb on + strand at 820.726 kb on - strand at 820.753 kb on - strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.787 kb on - strand, within Dshi_0810 at 820.827 kb on + strand, within Dshi_0810 at 820.849 kb on + strand, within Dshi_0810 at 821.179 kb on + strand at 821.310 kb on - strand at 821.323 kb on - strand at 821.357 kb on - strand at 821.415 kb on + strand, within Dshi_0812 at 821.461 kb on - strand, within Dshi_0812 at 821.488 kb on - strand, within Dshi_0812 at 821.529 kb on - strand, within Dshi_0812 at 821.613 kb on + strand, within Dshi_0812 at 821.621 kb on - strand, within Dshi_0812 at 821.637 kb on + strand at 821.709 kb on - strand at 821.812 kb on + strand, within Dshi_0813 at 821.844 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.940 kb on + strand, within Dshi_0813
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 819,714 + -0.8 819,714 + -0.8 819,721 + +0.2 819,726 - +0.2 819,727 + -0.5 819,727 + +1.3 819,729 - +0.7 819,743 - -0.4 819,748 - -0.2 819,748 - +0.1 819,750 + +0.4 819,754 - +0.2 819,761 + -0.1 819,777 + +0.4 819,781 + +0.5 819,781 + -0.1 819,782 + -0.8 819,782 + -1.5 819,786 + -0.0 819,789 + -1.6 819,789 + -0.9 819,789 + -0.7 819,789 + -0.6 819,789 + -2.4 819,789 - -0.3 819,789 - -0.0 819,797 - +0.7 819,797 - -0.4 819,797 - +0.7 819,797 - -0.1 819,797 - -0.3 819,797 - +0.7 819,818 + +0.3 819,819 - -0.2 819,836 + +0.1 819,836 - +0.7 819,839 + -0.2 819,839 + -0.2 819,845 + -0.3 819,847 - -0.7 819,847 - -0.5 819,863 - +0.6 819,863 - -0.0 819,873 + -2.2 819,873 + -0.4 819,874 + -0.3 819,874 + +1.4 819,881 - -0.5 819,881 - -0.1 819,882 - -0.6 819,882 - +0.0 819,886 - -0.5 819,895 + -0.1 819,895 + -0.5 819,895 + -0.0 819,895 + -0.9 819,895 + -0.9 819,895 + -0.6 819,895 + +0.7 819,895 + +0.6 819,895 + +0.4 819,895 + +0.8 819,895 + +0.4 819,895 + +0.3 819,895 + +0.5 819,895 + +0.7 819,895 + +0.1 819,895 + -0.2 819,895 + +0.9 819,895 + +0.8 819,895 + -0.4 819,895 + -0.3 819,895 + +0.0 819,895 + +0.7 819,895 + -0.4 819,895 + -0.3 819,895 + +0.6 819,895 + -0.3 819,895 + +0.5 819,895 + -0.9 819,895 + -1.5 819,895 + -0.9 819,895 + -0.8 819,895 + -0.1 819,895 + -0.2 819,895 + -0.5 819,895 + -0.1 819,895 + +0.2 819,895 + -1.9 819,895 + -0.4 819,895 + -0.9 819,895 + +0.8 819,895 + +1.1 819,895 + +1.1 819,895 + +0.7 819,895 + -1.0 819,895 + -0.6 819,895 + +0.1 819,895 + -2.9 819,895 + -0.4 819,895 + -1.3 819,895 + +0.6 819,895 + -0.5 819,895 + -0.9 819,895 + -0.9 819,895 + -0.1 819,895 + -0.3 819,895 + +2.3 819,895 + +0.5 819,895 + -0.6 819,895 + -0.5 819,895 + +0.2 819,895 + +0.3 819,895 + +0.1 819,895 + +0.5 819,895 + -0.1 819,895 + -0.2 819,895 + +1.8 819,895 + +0.2 819,895 + -1.4 819,896 + -0.1 819,900 + +0.1 819,903 - +0.7 819,903 - -1.4 819,903 - -0.4 819,903 - -1.7 819,903 - +0.1 819,903 - -0.9 819,903 - +1.3 819,903 - -0.2 819,903 - -1.2 819,903 - -0.7 819,903 - -0.6 819,903 - -0.2 819,903 - -0.2 819,903 - +0.3 819,903 - -1.3 819,903 - -0.1 819,903 - -1.2 819,903 - -1.1 819,903 - -0.6 819,903 - +0.0 819,903 - -0.9 819,903 - -0.1 819,903 - +0.2 819,903 - -0.3 819,903 - +0.3 819,903 - -1.1 819,903 - +0.6 819,903 - -0.4 819,903 - +0.5 819,903 - +0.1 819,903 - +0.1 819,903 - -0.0 819,903 - -1.2 819,903 - +0.2 819,903 - -0.0 819,905 + +0.5 819,905 + +1.0 819,910 + -1.0 819,910 + +0.5 819,910 + -0.3 819,910 + +0.1 819,910 + +0.5 819,910 + -1.1 819,910 + -0.9 819,910 + -1.1 819,910 + +0.4 819,910 + -0.2 819,910 + +1.4 819,910 + +2.0 819,910 + -0.3 819,910 + +0.1 819,910 + +0.5 819,910 + +0.0 819,910 + +0.2 819,910 + +0.3 819,910 + +1.0 819,910 + +0.9 819,910 + -0.9 819,910 + +0.4 819,910 + +1.0 819,910 + -1.4 819,910 + +0.6 819,910 + -0.4 819,910 + +0.1 819,910 + -0.4 819,910 + -0.3 819,910 + -0.5 819,910 + +0.6 819,910 + +1.2 819,910 + -0.0 819,912 + -0.5 819,913 - -0.9 819,913 - +0.8 819,918 - -0.4 819,918 - -0.9 819,918 - -0.0 819,918 - -0.1 819,918 - -0.7 819,918 - -2.1 819,918 - -0.8 819,918 - +0.3 819,918 - -1.1 819,918 - +0.3 819,918 - -0.4 819,918 - -0.7 819,918 - +0.7 819,920 - +0.4 819,920 - -0.7 819,934 - -0.2 819,935 + -0.4 819,940 + -0.3 819,960 + +0.7 819,981 + -0.3 819,981 + -0.9 819,981 + +1.8 819,981 + +0.7 819,981 + -1.2 819,981 + -0.1 819,981 + -0.9 819,981 + -0.4 819,988 - +0.7 819,989 - -0.7 819,989 - -2.5 819,989 - +0.5 819,989 - -1.9 819,989 - -0.1 819,989 - +0.8 819,991 + -0.5 819,999 - +0.4 820,027 - -0.5 820,027 - +0.5 820,029 - +0.2 820,038 + +0.5 820,090 - +0.7 820,097 + +0.1 820,098 + -0.8 820,098 + -0.0 820,105 - -1.8 820,108 + +0.3 820,108 + -1.3 820,110 + +0.3 820,116 - -1.0 820,130 - -1.5 820,170 + -0.4 820,170 - +0.7 820,200 - -1.1 820,209 + +0.9 820,217 - -1.8 820,219 + -0.7 820,219 - +0.2 820,227 - +0.1 820,240 + -0.3 820,248 - +0.7 820,258 - -0.1 820,266 + -0.2 820,266 + +0.4 820,274 - +0.4 820,289 - +0.0 820,291 + -0.3 820,299 - -0.7 820,333 - +0.7 820,346 + -0.7 820,359 + -0.6 820,383 + -0.7 820,397 - +0.1 820,425 + -0.9 820,431 + +0.0 820,433 - -0.7 820,433 - +0.0 820,433 - +0.4 820,433 - -0.2 820,435 - +1.4 820,436 + -1.3 820,444 + +0.2 820,453 + +0.9 820,453 + -0.7 820,453 + -0.0 820,453 + +0.3 820,453 + +0.8 820,453 + -1.5 820,453 + -1.4 820,460 + +0.1 820,461 - -0.2 820,461 - +1.0 820,461 - -0.3 820,461 - +0.9 820,461 - +0.2 820,463 + -0.6 820,464 + -1.3 820,464 + +0.8 820,464 + -1.2 820,464 + +0.3 820,464 + -0.4 820,464 + -0.7 820,471 + +0.6 820,472 - -3.1 820,474 - -0.3 820,479 - -0.6 820,479 - -0.8 820,483 + +0.1 820,483 + -0.3 820,483 + -0.2 820,483 + -0.1 820,483 + -0.2 820,484 + +0.2 820,488 + +0.5 820,488 + +0.9 820,491 - -0.5 820,491 - +0.2 820,491 - +0.0 820,524 + -0.8 820,526 + -1.6 820,527 - -0.9 820,533 - +0.1 820,540 - +0.4 820,540 - +0.4 820,546 - +0.2 820,578 + +0.3 820,583 + -0.6 820,588 + +0.2 820,588 + +0.8 820,591 - +0.7 820,591 - +0.9 820,591 - +1.5 820,596 - +0.3 820,601 - +0.6 820,608 - -2.2 820,613 - -1.4 820,627 - -0.2 820,630 + -1.6 820,654 + +1.2 820,656 - +0.4 820,659 + -0.3 820,668 + +0.3 820,676 - -1.0 820,697 + -0.2 820,726 - -0.0 820,753 - Dshi_0810 0.19 -0.7 820,779 + Dshi_0810 0.30 -1.0 820,779 + Dshi_0810 0.30 -0.4 820,787 - Dshi_0810 0.33 +0.1 820,827 + Dshi_0810 0.49 +0.0 820,849 + Dshi_0810 0.58 -0.3 821,179 + -0.3 821,310 - +0.2 821,323 - -0.5 821,357 - -0.2 821,415 + Dshi_0812 0.21 -1.9 821,461 - Dshi_0812 0.36 -0.2 821,488 - Dshi_0812 0.44 -1.8 821,529 - Dshi_0812 0.57 -0.2 821,613 + Dshi_0812 0.84 +0.1 821,621 - Dshi_0812 0.86 -0.7 821,637 + -0.2 821,709 - +0.4 821,812 + Dshi_0813 0.37 +1.2 821,844 - Dshi_0813 0.50 -1.2 821,878 - Dshi_0813 0.64 -0.1 821,878 - Dshi_0813 0.64 -0.1 821,940 + Dshi_0813 0.89 -1.7
Or see this region's nucleotide sequence