Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0680 and Dshi_0681 overlap by 8 nucleotides Dshi_0681 and Dshi_0682 are separated by 76 nucleotides Dshi_0682 and Dshi_0683 are separated by 176 nucleotides Dshi_0683 and Dshi_0684 overlap by 4 nucleotides Dshi_0684 and Dshi_0685 are separated by 7 nucleotides
Dshi_0680: Dshi_0680 - phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq), at 686,761 to 687,834
_0680
Dshi_0681: Dshi_0681 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 687,827 to 688,312
_0681
Dshi_0682: Dshi_0682 - protein of unknown function DUF465 (RefSeq), at 688,389 to 688,613
_0682
Dshi_0683: Dshi_0683 - heat shock protein Hsp20 (RefSeq), at 688,790 to 689,233
_0683
Dshi_0684: Dshi_0684 - protein of unknown function DUF1150 (RefSeq), at 689,230 to 689,457
_0684
Dshi_0685: Dshi_0685 - ApbE family lipoprotein (RefSeq), at 689,465 to 690,361
_0685
Position (kb) 688
689 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.374 kb on + strand at 688.492 kb on - strand, within Dshi_0682 at 688.657 kb on + strand at 688.681 kb on - strand at 688.684 kb on + strand at 688.692 kb on - strand at 688.838 kb on - strand, within Dshi_0683 at 688.878 kb on - strand, within Dshi_0683 at 689.035 kb on + strand, within Dshi_0683 at 689.087 kb on - strand, within Dshi_0683 at 689.087 kb on - strand, within Dshi_0683 at 689.129 kb on + strand, within Dshi_0683 at 689.130 kb on - strand, within Dshi_0683 at 689.191 kb on - strand at 689.255 kb on + strand, within Dshi_0684 at 689.275 kb on + strand, within Dshi_0684 at 689.301 kb on - strand, within Dshi_0684 at 689.336 kb on - strand, within Dshi_0684 at 689.336 kb on - strand, within Dshi_0684 at 689.336 kb on - strand, within Dshi_0684 at 689.508 kb on - strand at 689.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 688,374 + -0.8 688,492 - Dshi_0682 0.46 -0.4 688,657 + -0.3 688,681 - -1.1 688,684 + +0.3 688,692 - -0.8 688,838 - Dshi_0683 0.11 -1.0 688,878 - Dshi_0683 0.20 -0.9 689,035 + Dshi_0683 0.55 -1.0 689,087 - Dshi_0683 0.67 +0.5 689,087 - Dshi_0683 0.67 -0.7 689,129 + Dshi_0683 0.76 -1.1 689,130 - Dshi_0683 0.77 -2.0 689,191 - -1.5 689,255 + Dshi_0684 0.11 -1.2 689,275 + Dshi_0684 0.20 +1.1 689,301 - Dshi_0684 0.31 +0.2 689,336 - Dshi_0684 0.46 +0.3 689,336 - Dshi_0684 0.46 +2.0 689,336 - Dshi_0684 0.46 -0.6 689,508 - +0.6 689,518 - -0.4
Or see this region's nucleotide sequence