Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0135 and Dshi_0136 are separated by 50 nucleotides Dshi_0136 and Dshi_0137 overlap by 4 nucleotides Dshi_0137 and Dshi_0138 are separated by 22 nucleotides
Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571
_0135
Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395
_0136
Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859
_0137
Dshi_0138: Dshi_0138 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 135,882 to 137,189
_0138
Position (kb) 134
135
136 Strain fitness (log2 ratio) -1
0
1 at 133.634 kb on - strand, within Dshi_0135 at 133.635 kb on + strand, within Dshi_0135 at 133.635 kb on + strand, within Dshi_0135 at 133.645 kb on - strand, within Dshi_0135 at 133.711 kb on + strand, within Dshi_0135 at 133.712 kb on + strand, within Dshi_0135 at 133.781 kb on + strand, within Dshi_0135 at 133.896 kb on - strand, within Dshi_0135 at 134.095 kb on + strand, within Dshi_0135 at 134.103 kb on - strand, within Dshi_0135 at 134.116 kb on - strand, within Dshi_0135 at 134.137 kb on + strand, within Dshi_0135 at 134.178 kb on + strand, within Dshi_0135 at 134.178 kb on + strand, within Dshi_0135 at 134.215 kb on - strand, within Dshi_0135 at 134.215 kb on - strand, within Dshi_0135 at 134.236 kb on + strand, within Dshi_0135 at 134.331 kb on + strand, within Dshi_0135 at 134.339 kb on - strand, within Dshi_0135 at 134.485 kb on - strand at 134.603 kb on - strand at 134.779 kb on - strand, within Dshi_0136 at 134.922 kb on - strand, within Dshi_0136 at 134.991 kb on - strand, within Dshi_0136 at 135.012 kb on - strand, within Dshi_0136 at 135.098 kb on - strand, within Dshi_0136 at 135.227 kb on + strand, within Dshi_0136 at 135.381 kb on - strand at 135.584 kb on - strand, within Dshi_0137 at 135.698 kb on - strand, within Dshi_0137 at 135.739 kb on + strand, within Dshi_0137 at 135.814 kb on + strand at 135.820 kb on + strand at 135.833 kb on - strand at 135.890 kb on + strand at 135.993 kb on - strand at 136.012 kb on - strand at 136.058 kb on - strand, within Dshi_0138 at 136.225 kb on + strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.347 kb on - strand, within Dshi_0138
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 133,634 - Dshi_0135 0.23 +0.3 133,635 + Dshi_0135 0.23 -0.3 133,635 + Dshi_0135 0.23 -0.2 133,645 - Dshi_0135 0.24 -0.3 133,711 + Dshi_0135 0.29 -0.3 133,712 + Dshi_0135 0.30 -1.1 133,781 + Dshi_0135 0.35 -0.5 133,896 - Dshi_0135 0.45 -1.0 134,095 + Dshi_0135 0.61 -0.3 134,103 - Dshi_0135 0.62 +0.8 134,116 - Dshi_0135 0.63 -0.3 134,137 + Dshi_0135 0.64 -1.2 134,178 + Dshi_0135 0.68 +0.4 134,178 + Dshi_0135 0.68 -0.9 134,215 - Dshi_0135 0.71 -1.1 134,215 - Dshi_0135 0.71 +0.3 134,236 + Dshi_0135 0.72 +0.8 134,331 + Dshi_0135 0.80 +0.2 134,339 - Dshi_0135 0.81 +0.1 134,485 - +0.2 134,603 - +0.1 134,779 - Dshi_0136 0.20 -0.4 134,922 - Dshi_0136 0.39 +0.4 134,991 - Dshi_0136 0.48 -0.5 135,012 - Dshi_0136 0.50 -0.7 135,098 - Dshi_0136 0.61 -0.0 135,227 + Dshi_0136 0.78 -1.4 135,381 - +0.1 135,584 - Dshi_0137 0.41 -0.0 135,698 - Dshi_0137 0.65 +0.4 135,739 + Dshi_0137 0.74 -0.0 135,814 + +0.6 135,820 + +0.7 135,833 - +0.2 135,890 + -0.3 135,993 - -0.6 136,012 - -0.7 136,058 - Dshi_0138 0.13 -0.0 136,225 + Dshi_0138 0.26 +1.0 136,251 - Dshi_0138 0.28 -0.7 136,251 - Dshi_0138 0.28 +0.4 136,347 - Dshi_0138 0.36 +0.2
Or see this region's nucleotide sequence