Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09660

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09650 and PGA1_c09660 are separated by 286 nucleotidesPGA1_c09660 and PGA1_c09670 overlap by 13 nucleotidesPGA1_c09670 and PGA1_c09680 are separated by 1 nucleotides PGA1_c09650: PGA1_c09650 - UDP-N-acetylenolpyruvoylglucosamine reductase MurB, at 989,033 to 989,956 _c09650 PGA1_c09660: PGA1_c09660 - D-alanine--D-alanine ligase Ddl, at 990,243 to 991,163 _c09660 PGA1_c09670: PGA1_c09670 - putative cell division protein FtsQ, at 991,151 to 992,044 _c09670 PGA1_c09680: PGA1_c09680 - celldivision protein FtsA, at 992,046 to 993,380 _c09680 Position (kb) 990 991 992Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 989.932 kb on + strandat 989.992 kb on + strandat 990.088 kb on - strandat 990.088 kb on - strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.117 kb on + strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.127 kb on + strandat 990.162 kb on + strandat 992.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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989,932 + -2.8
989,992 + -1.3
990,088 - +1.8
990,088 - -0.6
990,110 + +1.5
990,110 + -1.1
990,110 + -0.7
990,110 + +0.3
990,110 + +0.7
990,110 + -0.6
990,110 + -0.6
990,110 + -1.2
990,110 + -0.1
990,110 + -2.3
990,117 + +1.7
990,118 - -0.9
990,118 - +0.7
990,118 - -0.7
990,118 - -1.4
990,118 - -1.4
990,118 - +1.3
990,118 - +1.3
990,118 - -1.3
990,127 + -0.3
990,162 + -0.3
992,023 + +2.4

Or see this region's nucleotide sequence