Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09280 and PGA1_c09290 are separated by 104 nucleotides PGA1_c09290 and PGA1_c09300 are separated by 176 nucleotides PGA1_c09300 and PGA1_c09310 are separated by 101 nucleotides PGA1_c09310 and PGA1_c09320 are separated by 98 nucleotides
PGA1_c09280: PGA1_c09280 - Uncharacterized protein conserved in bacteria, at 950,169 to 950,555
_c09280
PGA1_c09290: PGA1_c09290 - WGR domain., at 950,660 to 950,911
_c09290
PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624
_c09300
PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457
_c09310
PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194
_c09320
Position (kb) 951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 950.117 kb on + strand at 950.195 kb on - strand at 950.213 kb on - strand, within PGA1_c09280 at 950.214 kb on + strand, within PGA1_c09280 at 950.222 kb on - strand, within PGA1_c09280 at 950.227 kb on - strand, within PGA1_c09280 at 950.277 kb on - strand, within PGA1_c09280 at 950.294 kb on + strand, within PGA1_c09280 at 950.297 kb on + strand, within PGA1_c09280 at 950.310 kb on - strand, within PGA1_c09280 at 950.343 kb on + strand, within PGA1_c09280 at 950.421 kb on + strand, within PGA1_c09280 at 950.426 kb on + strand, within PGA1_c09280 at 950.435 kb on - strand, within PGA1_c09280 at 950.444 kb on - strand, within PGA1_c09280 at 950.464 kb on + strand, within PGA1_c09280 at 950.465 kb on + strand, within PGA1_c09280 at 950.514 kb on + strand, within PGA1_c09280 at 950.522 kb on - strand at 950.532 kb on - strand at 950.532 kb on - strand at 950.601 kb on + strand at 950.606 kb on + strand at 950.658 kb on + strand at 950.666 kb on - strand at 950.666 kb on - strand at 950.666 kb on - strand at 950.781 kb on + strand, within PGA1_c09290 at 950.802 kb on + strand, within PGA1_c09290 at 950.802 kb on + strand, within PGA1_c09290 at 950.810 kb on - strand, within PGA1_c09290 at 950.812 kb on + strand, within PGA1_c09290 at 950.859 kb on + strand, within PGA1_c09290 at 950.859 kb on + strand, within PGA1_c09290 at 950.903 kb on + strand at 950.903 kb on + strand at 950.903 kb on + strand at 950.903 kb on + strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.954 kb on + strand at 950.954 kb on + strand at 950.954 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.969 kb on + strand at 951.032 kb on - strand at 951.094 kb on - strand at 951.190 kb on + strand, within PGA1_c09300 at 951.190 kb on + strand, within PGA1_c09300 at 951.193 kb on - strand, within PGA1_c09300 at 951.195 kb on + strand, within PGA1_c09300 at 951.198 kb on - strand, within PGA1_c09300 at 951.198 kb on - strand, within PGA1_c09300 at 951.198 kb on - strand, within PGA1_c09300 at 951.203 kb on + strand, within PGA1_c09300 at 951.203 kb on - strand, within PGA1_c09300 at 951.203 kb on - strand, within PGA1_c09300 at 951.219 kb on + strand, within PGA1_c09300 at 951.230 kb on + strand, within PGA1_c09300 at 951.230 kb on + strand, within PGA1_c09300 at 951.238 kb on - strand, within PGA1_c09300 at 951.267 kb on + strand, within PGA1_c09300 at 951.275 kb on - strand, within PGA1_c09300 at 951.320 kb on - strand, within PGA1_c09300 at 951.350 kb on - strand, within PGA1_c09300 at 951.350 kb on - strand, within PGA1_c09300 at 951.350 kb on - strand, within PGA1_c09300 at 951.368 kb on + strand, within PGA1_c09300 at 951.371 kb on - strand, within PGA1_c09300 at 951.394 kb on + strand, within PGA1_c09300 at 951.402 kb on - strand, within PGA1_c09300 at 951.527 kb on + strand, within PGA1_c09300 at 951.540 kb on - strand, within PGA1_c09300 at 951.556 kb on - strand, within PGA1_c09300 at 951.589 kb on + strand at 951.589 kb on + strand at 951.589 kb on + strand at 951.594 kb on + strand at 951.597 kb on - strand at 951.597 kb on - strand at 951.628 kb on - strand at 951.632 kb on + strand at 951.679 kb on + strand at 951.739 kb on - strand at 951.742 kb on + strand at 951.747 kb on - strand at 951.783 kb on - strand at 951.797 kb on + strand at 951.797 kb on + strand at 951.839 kb on - strand, within PGA1_c09310 at 951.842 kb on + strand, within PGA1_c09310 at 951.882 kb on + strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.910 kb on + strand, within PGA1_c09310 at 951.918 kb on - strand, within PGA1_c09310 at 951.984 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 952.018 kb on - strand, within PGA1_c09310 at 952.066 kb on - strand, within PGA1_c09310 at 952.125 kb on - strand, within PGA1_c09310 at 952.193 kb on + strand, within PGA1_c09310 at 952.214 kb on + strand, within PGA1_c09310 at 952.331 kb on + strand, within PGA1_c09310 at 952.353 kb on + strand, within PGA1_c09310 at 952.381 kb on + strand, within PGA1_c09310 at 952.389 kb on + strand at 952.412 kb on + strand at 952.412 kb on + strand at 952.413 kb on + strand at 952.413 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.425 kb on + strand at 952.425 kb on + strand at 952.450 kb on + strand at 952.452 kb on + strand at 952.469 kb on + strand at 952.523 kb on - strand at 952.523 kb on - strand at 952.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 950,117 + +0.3 950,195 - -0.7 950,213 - PGA1_c09280 0.11 +0.6 950,214 + PGA1_c09280 0.12 +1.7 950,222 - PGA1_c09280 0.14 -0.4 950,227 - PGA1_c09280 0.15 -1.3 950,277 - PGA1_c09280 0.28 +0.5 950,294 + PGA1_c09280 0.32 +0.3 950,297 + PGA1_c09280 0.33 -1.8 950,310 - PGA1_c09280 0.36 +1.9 950,343 + PGA1_c09280 0.45 -1.2 950,421 + PGA1_c09280 0.65 +0.2 950,426 + PGA1_c09280 0.66 -0.9 950,435 - PGA1_c09280 0.69 +0.2 950,444 - PGA1_c09280 0.71 +1.2 950,464 + PGA1_c09280 0.76 -0.7 950,465 + PGA1_c09280 0.76 -1.1 950,514 + PGA1_c09280 0.89 +2.5 950,522 - -2.6 950,532 - -0.3 950,532 - +2.7 950,601 + -1.2 950,606 + +2.5 950,658 + +1.9 950,666 - +1.0 950,666 - +0.7 950,666 - -1.8 950,781 + PGA1_c09290 0.48 -0.3 950,802 + PGA1_c09290 0.56 -1.1 950,802 + PGA1_c09290 0.56 +4.0 950,810 - PGA1_c09290 0.60 -0.3 950,812 + PGA1_c09290 0.60 +2.6 950,859 + PGA1_c09290 0.79 -0.2 950,859 + PGA1_c09290 0.79 +0.6 950,903 + +2.1 950,903 + +0.7 950,903 + +0.4 950,903 + -1.4 950,911 - +1.9 950,911 - +0.9 950,911 - +1.8 950,911 - -0.9 950,954 + +1.9 950,954 + -1.3 950,954 - -2.4 950,962 - -0.9 950,962 - -1.3 950,962 - +0.4 950,962 - -1.3 950,962 - +1.3 950,969 + +2.2 951,032 - -3.2 951,094 - +3.5 951,190 + PGA1_c09300 0.19 +1.1 951,190 + PGA1_c09300 0.19 -1.2 951,193 - PGA1_c09300 0.20 -0.1 951,195 + PGA1_c09300 0.20 +2.0 951,198 - PGA1_c09300 0.20 -0.7 951,198 - PGA1_c09300 0.20 -1.1 951,198 - PGA1_c09300 0.20 -1.7 951,203 + PGA1_c09300 0.21 +1.6 951,203 - PGA1_c09300 0.21 +0.8 951,203 - PGA1_c09300 0.21 -0.1 951,219 + PGA1_c09300 0.24 +1.0 951,230 + PGA1_c09300 0.26 +2.1 951,230 + PGA1_c09300 0.26 +1.4 951,238 - PGA1_c09300 0.28 +1.6 951,267 + PGA1_c09300 0.33 +1.7 951,275 - PGA1_c09300 0.35 +0.7 951,320 - PGA1_c09300 0.43 +1.9 951,350 - PGA1_c09300 0.49 -0.4 951,350 - PGA1_c09300 0.49 +0.2 951,350 - PGA1_c09300 0.49 +1.4 951,368 + PGA1_c09300 0.52 +1.9 951,371 - PGA1_c09300 0.53 -0.0 951,394 + PGA1_c09300 0.57 -0.3 951,402 - PGA1_c09300 0.58 -1.6 951,527 + PGA1_c09300 0.82 +0.7 951,540 - PGA1_c09300 0.84 +1.8 951,556 - PGA1_c09300 0.87 +0.7 951,589 + +1.3 951,589 + +0.3 951,589 + +2.8 951,594 + +0.0 951,597 - +0.2 951,597 - -1.6 951,628 - +1.3 951,632 + +0.9 951,679 + -1.4 951,739 - +2.3 951,742 + -0.9 951,747 - +1.1 951,783 - -1.7 951,797 + -1.7 951,797 + -0.4 951,839 - PGA1_c09310 0.15 +3.5 951,842 + PGA1_c09310 0.16 +2.1 951,882 + PGA1_c09310 0.21 +0.0 951,895 - PGA1_c09310 0.23 +2.1 951,895 - PGA1_c09310 0.23 -2.1 951,910 + PGA1_c09310 0.25 +0.2 951,918 - PGA1_c09310 0.26 +0.3 951,984 + PGA1_c09310 0.35 -1.6 951,990 + PGA1_c09310 0.36 -1.1 951,990 + PGA1_c09310 0.36 +1.6 952,018 - PGA1_c09310 0.40 +0.1 952,066 - PGA1_c09310 0.46 +0.3 952,125 - PGA1_c09310 0.55 +1.4 952,193 + PGA1_c09310 0.64 +1.4 952,214 + PGA1_c09310 0.67 +0.5 952,331 + PGA1_c09310 0.83 +1.5 952,353 + PGA1_c09310 0.86 +1.5 952,381 + PGA1_c09310 0.89 -1.6 952,389 + -1.7 952,412 + +2.6 952,412 + -2.3 952,413 + -2.1 952,413 + +2.0 952,420 - -0.6 952,420 - +0.7 952,425 + -2.2 952,425 + -0.1 952,450 + -1.2 952,452 + -1.6 952,469 + +2.3 952,523 - -1.7 952,523 - +1.3 952,561 - -0.1
Or see this region's nucleotide sequence