Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08390 and PGA1_c08400 are separated by 132 nucleotides PGA1_c08400 and PGA1_c08410 are separated by 93 nucleotides PGA1_c08410 and PGA1_c08420 are separated by 150 nucleotides
PGA1_c08390: PGA1_c08390 - putative transcriptional regulator, AraC family, at 868,645 to 869,736
_c08390
PGA1_c08400: PGA1_c08400 - Uncharacterized conserved protein, at 869,869 to 870,786
_c08400
PGA1_c08410: PGA1_c08410 - hypothetical protein, at 870,880 to 871,212
_c08410
PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838
_c08420
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 868.934 kb on - strand, within PGA1_c08390 at 869.060 kb on + strand, within PGA1_c08390 at 869.060 kb on + strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.088 kb on + strand, within PGA1_c08390 at 869.096 kb on - strand, within PGA1_c08390 at 869.247 kb on - strand, within PGA1_c08390 at 869.259 kb on + strand, within PGA1_c08390 at 869.466 kb on + strand, within PGA1_c08390 at 869.506 kb on - strand, within PGA1_c08390 at 869.532 kb on + strand, within PGA1_c08390 at 869.584 kb on - strand, within PGA1_c08390 at 869.587 kb on + strand, within PGA1_c08390 at 869.595 kb on - strand, within PGA1_c08390 at 869.786 kb on + strand at 869.786 kb on + strand at 869.786 kb on + strand at 869.794 kb on - strand at 869.819 kb on + strand at 869.819 kb on + strand at 869.819 kb on + strand at 869.827 kb on - strand at 869.827 kb on - strand at 869.827 kb on - strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.850 kb on - strand at 869.852 kb on - strand at 869.919 kb on - strand at 869.925 kb on - strand at 869.934 kb on + strand at 869.950 kb on - strand at 870.074 kb on + strand, within PGA1_c08400 at 870.074 kb on + strand, within PGA1_c08400 at 870.082 kb on - strand, within PGA1_c08400 at 870.082 kb on - strand, within PGA1_c08400 at 870.134 kb on - strand, within PGA1_c08400 at 870.146 kb on - strand, within PGA1_c08400 at 870.154 kb on - strand, within PGA1_c08400 at 870.156 kb on - strand, within PGA1_c08400 at 870.219 kb on + strand, within PGA1_c08400 at 870.255 kb on + strand, within PGA1_c08400 at 870.291 kb on - strand, within PGA1_c08400 at 870.323 kb on - strand, within PGA1_c08400 at 870.323 kb on - strand, within PGA1_c08400 at 870.340 kb on + strand, within PGA1_c08400 at 870.340 kb on + strand, within PGA1_c08400 at 870.345 kb on + strand, within PGA1_c08400 at 870.390 kb on + strand at 870.441 kb on - strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.462 kb on + strand, within PGA1_c08400 at 870.470 kb on - strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.522 kb on - strand, within PGA1_c08400 at 870.603 kb on - strand, within PGA1_c08400 at 870.620 kb on - strand, within PGA1_c08400 at 870.631 kb on - strand, within PGA1_c08400 at 870.635 kb on + strand, within PGA1_c08400 at 870.636 kb on + strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.699 kb on - strand at 870.705 kb on + strand at 870.713 kb on + strand at 870.728 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.758 kb on - strand at 870.759 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.818 kb on + strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.842 kb on + strand at 870.845 kb on - strand at 870.860 kb on + strand at 870.904 kb on + strand at 870.923 kb on + strand, within PGA1_c08410 at 870.926 kb on + strand, within PGA1_c08410 at 870.930 kb on + strand, within PGA1_c08410 at 870.934 kb on - strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 871.000 kb on - strand, within PGA1_c08410 at 871.022 kb on - strand, within PGA1_c08410 at 871.050 kb on - strand, within PGA1_c08410 at 871.051 kb on + strand, within PGA1_c08410 at 871.082 kb on + strand, within PGA1_c08410 at 871.139 kb on + strand, within PGA1_c08410 at 871.147 kb on - strand, within PGA1_c08410 at 871.175 kb on + strand, within PGA1_c08410 at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.193 kb on - strand at 871.207 kb on + strand at 871.215 kb on - strand at 871.225 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.309 kb on - strand at 871.381 kb on - strand at 871.391 kb on - strand at 871.391 kb on - strand at 871.396 kb on - strand at 871.396 kb on - strand at 871.421 kb on - strand at 871.464 kb on + strand at 871.472 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.546 kb on + strand, within PGA1_c08420 at 871.584 kb on + strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.748 kb on - strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.763 kb on - strand, within PGA1_c08420
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 868,934 - PGA1_c08390 0.26 +2.3 869,060 + PGA1_c08390 0.38 -0.7 869,060 + PGA1_c08390 0.38 -0.9 869,068 - PGA1_c08390 0.39 +1.7 869,068 - PGA1_c08390 0.39 +0.4 869,068 - PGA1_c08390 0.39 -2.5 869,068 - PGA1_c08390 0.39 +0.7 869,088 + PGA1_c08390 0.41 -1.1 869,096 - PGA1_c08390 0.41 +0.3 869,247 - PGA1_c08390 0.55 +0.8 869,259 + PGA1_c08390 0.56 -1.7 869,466 + PGA1_c08390 0.75 -1.0 869,506 - PGA1_c08390 0.79 -0.5 869,532 + PGA1_c08390 0.81 +1.0 869,584 - PGA1_c08390 0.86 -0.7 869,587 + PGA1_c08390 0.86 +1.6 869,595 - PGA1_c08390 0.87 -0.0 869,786 + -0.0 869,786 + -2.1 869,786 + -1.3 869,794 - +0.6 869,819 + +0.9 869,819 + +0.7 869,819 + -2.1 869,827 - +0.3 869,827 - +0.6 869,827 - +4.0 869,842 + +1.5 869,842 + -1.5 869,842 + -0.7 869,842 + -1.5 869,842 + +3.6 869,842 + +0.8 869,842 + +2.9 869,842 + +1.8 869,842 + +0.3 869,842 + -1.9 869,842 + -0.1 869,842 + +1.3 869,842 + +1.5 869,842 + +0.3 869,850 - +0.7 869,852 - -1.4 869,919 - -0.4 869,925 - -0.5 869,934 + -0.2 869,950 - +1.8 870,074 + PGA1_c08400 0.22 -0.0 870,074 + PGA1_c08400 0.22 +0.6 870,082 - PGA1_c08400 0.23 +3.5 870,082 - PGA1_c08400 0.23 -0.3 870,134 - PGA1_c08400 0.29 +0.4 870,146 - PGA1_c08400 0.30 +0.8 870,154 - PGA1_c08400 0.31 -1.9 870,156 - PGA1_c08400 0.31 +2.7 870,219 + PGA1_c08400 0.38 +0.4 870,255 + PGA1_c08400 0.42 +2.3 870,291 - PGA1_c08400 0.46 -1.8 870,323 - PGA1_c08400 0.49 +2.3 870,323 - PGA1_c08400 0.49 +1.0 870,340 + PGA1_c08400 0.51 +1.0 870,340 + PGA1_c08400 0.51 -0.4 870,345 + PGA1_c08400 0.52 +1.6 870,390 + +0.7 870,441 - PGA1_c08400 0.62 -2.0 870,443 + PGA1_c08400 0.63 +1.0 870,443 + PGA1_c08400 0.63 +0.3 870,462 + PGA1_c08400 0.65 -1.0 870,470 - PGA1_c08400 0.65 +1.8 870,474 + PGA1_c08400 0.66 -2.1 870,474 + PGA1_c08400 0.66 -0.6 870,474 + PGA1_c08400 0.66 -1.0 870,474 + PGA1_c08400 0.66 -0.7 870,482 - PGA1_c08400 0.67 +1.3 870,482 - PGA1_c08400 0.67 -2.0 870,503 + PGA1_c08400 0.69 -2.2 870,503 + PGA1_c08400 0.69 -1.0 870,522 - PGA1_c08400 0.71 +1.9 870,603 - PGA1_c08400 0.80 +2.5 870,620 - PGA1_c08400 0.82 +1.0 870,631 - PGA1_c08400 0.83 +0.6 870,635 + PGA1_c08400 0.83 +1.4 870,636 + PGA1_c08400 0.84 +0.6 870,643 - PGA1_c08400 0.84 +0.9 870,643 - PGA1_c08400 0.84 +0.4 870,691 + PGA1_c08400 0.90 +2.2 870,691 + PGA1_c08400 0.90 -0.9 870,699 - +1.1 870,705 + -0.9 870,713 + -1.7 870,728 + -0.7 870,750 + -2.1 870,750 + +0.7 870,750 + -1.1 870,750 + -2.6 870,756 - +0.3 870,756 - +2.0 870,756 - +1.7 870,758 - -1.4 870,759 + -1.3 870,816 + -2.4 870,816 + -2.1 870,816 + +0.1 870,816 + +2.8 870,816 + -1.3 870,816 + +2.3 870,816 + +2.2 870,816 + -0.9 870,816 + +2.8 870,816 + -2.0 870,816 + +0.7 870,816 + -0.0 870,816 + -1.7 870,816 + +2.3 870,816 + +1.1 870,818 + +2.3 870,824 - -1.1 870,824 - +0.5 870,824 - -1.3 870,824 - +0.4 870,824 - -1.8 870,837 + -1.9 870,837 + +0.9 870,837 + -1.3 870,842 + -0.3 870,845 - +1.5 870,860 + -1.9 870,904 + +0.2 870,923 + PGA1_c08410 0.13 +2.0 870,926 + PGA1_c08410 0.14 +0.9 870,930 + PGA1_c08410 0.15 -1.6 870,934 - PGA1_c08410 0.16 +2.5 870,936 + PGA1_c08410 0.17 +0.5 870,936 + PGA1_c08410 0.17 +0.3 870,992 + PGA1_c08410 0.34 +0.7 870,992 + PGA1_c08410 0.34 -0.6 871,000 - PGA1_c08410 0.36 -1.4 871,022 - PGA1_c08410 0.43 -0.9 871,050 - PGA1_c08410 0.51 -1.9 871,051 + PGA1_c08410 0.51 -1.9 871,082 + PGA1_c08410 0.61 -1.3 871,139 + PGA1_c08410 0.78 +0.4 871,147 - PGA1_c08410 0.80 -0.3 871,175 + PGA1_c08410 0.89 -0.9 871,185 + +1.2 871,185 + -0.5 871,185 + +0.3 871,185 + +0.5 871,185 + +1.6 871,193 - -0.1 871,207 + -2.1 871,215 - -1.7 871,225 + -0.5 871,301 + -1.4 871,301 + +2.7 871,301 + -1.1 871,301 + +1.4 871,309 - -1.3 871,381 - +0.9 871,391 - +0.7 871,391 - -0.0 871,396 - -1.3 871,396 - +0.4 871,421 - +1.0 871,464 + -0.3 871,472 - +2.5 871,500 - -0.5 871,500 - +2.1 871,500 - +1.9 871,546 + PGA1_c08420 0.12 +0.8 871,584 + PGA1_c08420 0.15 +2.9 871,656 - PGA1_c08420 0.20 +1.2 871,656 - PGA1_c08420 0.20 +2.9 871,735 + PGA1_c08420 0.25 -3.4 871,735 + PGA1_c08420 0.25 +0.2 871,748 - PGA1_c08420 0.26 +1.9 871,755 + PGA1_c08420 0.27 +1.3 871,755 + PGA1_c08420 0.27 -1.4 871,763 - PGA1_c08420 0.27 -1.7
Or see this region's nucleotide sequence