Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07580 and PGA1_c07590 are separated by 497 nucleotides PGA1_c07590 and PGA1_c07600 are separated by 62 nucleotides PGA1_c07600 and PGA1_c07610 are separated by 144 nucleotides
PGA1_c07580: PGA1_c07580 - glutathione-regulated potassium-efflux system protein KefC, at 782,400 to 784,292
_c07580
PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010
_c07590
PGA1_c07600: PGA1_c07600 - transcriptional regulator, AsnC / lrp family, at 786,073 to 786,528
_c07600
PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773
_c07610
Position (kb) 784
785
786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 783.884 kb on - strand, within PGA1_c07580 at 783.905 kb on - strand, within PGA1_c07580 at 783.922 kb on - strand, within PGA1_c07580 at 783.990 kb on + strand, within PGA1_c07580 at 783.998 kb on - strand, within PGA1_c07580 at 784.076 kb on + strand, within PGA1_c07580 at 784.076 kb on + strand, within PGA1_c07580 at 784.084 kb on - strand, within PGA1_c07580 at 784.084 kb on - strand, within PGA1_c07580 at 784.197 kb on + strand at 784.197 kb on + strand at 784.197 kb on + strand at 784.197 kb on + strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.258 kb on + strand at 784.302 kb on - strand at 784.305 kb on + strand at 784.310 kb on + strand at 784.318 kb on - strand at 784.353 kb on + strand at 784.358 kb on + strand at 784.361 kb on - strand at 784.379 kb on - strand at 784.424 kb on + strand at 784.469 kb on + strand at 784.484 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.504 kb on - strand at 784.506 kb on + strand at 784.506 kb on + strand at 784.506 kb on + strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.514 kb on - strand at 784.519 kb on - strand at 784.568 kb on - strand at 784.578 kb on - strand at 784.592 kb on - strand at 784.615 kb on - strand at 784.623 kb on + strand at 784.623 kb on + strand at 784.623 kb on + strand at 784.631 kb on + strand at 784.650 kb on + strand at 784.673 kb on + strand at 784.714 kb on - strand at 784.730 kb on - strand at 784.767 kb on + strand at 784.793 kb on + strand at 784.793 kb on + strand at 784.793 kb on + strand at 784.801 kb on - strand at 784.803 kb on - strand at 784.808 kb on + strand at 784.820 kb on - strand at 784.913 kb on - strand, within PGA1_c07590 at 784.923 kb on - strand, within PGA1_c07590 at 784.947 kb on - strand, within PGA1_c07590 at 784.947 kb on - strand, within PGA1_c07590 at 784.981 kb on + strand, within PGA1_c07590 at 784.981 kb on + strand, within PGA1_c07590 at 785.118 kb on - strand, within PGA1_c07590 at 785.160 kb on - strand, within PGA1_c07590 at 785.168 kb on - strand, within PGA1_c07590 at 785.408 kb on - strand, within PGA1_c07590 at 785.425 kb on - strand, within PGA1_c07590 at 785.432 kb on - strand, within PGA1_c07590 at 785.452 kb on - strand, within PGA1_c07590 at 785.452 kb on - strand, within PGA1_c07590 at 785.452 kb on - strand, within PGA1_c07590 at 785.488 kb on + strand, within PGA1_c07590 at 785.555 kb on - strand, within PGA1_c07590 at 785.573 kb on + strand, within PGA1_c07590 at 785.580 kb on + strand, within PGA1_c07590 at 785.626 kb on + strand, within PGA1_c07590 at 785.634 kb on - strand, within PGA1_c07590 at 785.658 kb on + strand, within PGA1_c07590 at 785.688 kb on + strand, within PGA1_c07590 at 785.706 kb on + strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.741 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.765 kb on - strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.870 kb on + strand, within PGA1_c07590 at 785.911 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.038 kb on - strand at 786.041 kb on + strand at 786.049 kb on - strand at 786.051 kb on + strand at 786.051 kb on + strand at 786.059 kb on - strand at 786.061 kb on - strand at 786.078 kb on - strand at 786.189 kb on + strand, within PGA1_c07600 at 786.194 kb on + strand, within PGA1_c07600 at 786.197 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.235 kb on + strand, within PGA1_c07600 at 786.241 kb on + strand, within PGA1_c07600 at 786.262 kb on + strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.319 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.331 kb on + strand, within PGA1_c07600 at 786.332 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.359 kb on + strand, within PGA1_c07600 at 786.379 kb on + strand, within PGA1_c07600 at 786.393 kb on - strand, within PGA1_c07600 at 786.434 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.515 kb on + strand at 786.527 kb on - strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.594 kb on - strand at 786.594 kb on - strand at 786.648 kb on - strand at 786.665 kb on - strand at 786.677 kb on + strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.704 kb on - strand at 786.739 kb on - strand at 786.741 kb on + strand at 786.773 kb on + strand at 786.781 kb on - strand at 786.806 kb on + strand, within PGA1_c07610 at 786.809 kb on - strand, within PGA1_c07610
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 783,884 - PGA1_c07580 0.78 +2.7 783,905 - PGA1_c07580 0.80 +3.9 783,922 - PGA1_c07580 0.80 -2.0 783,990 + PGA1_c07580 0.84 +2.2 783,998 - PGA1_c07580 0.84 -0.9 784,076 + PGA1_c07580 0.89 +1.6 784,076 + PGA1_c07580 0.89 -0.0 784,084 - PGA1_c07580 0.89 -2.8 784,084 - PGA1_c07580 0.89 -1.8 784,197 + -0.5 784,197 + +1.6 784,197 + +1.6 784,197 + +1.9 784,205 - -2.2 784,205 - +1.1 784,205 - +0.3 784,205 - -0.3 784,258 + +0.0 784,302 - -1.8 784,305 + +0.0 784,310 + +0.3 784,318 - -0.7 784,353 + +0.7 784,358 + -1.0 784,361 - +1.7 784,379 - +0.9 784,424 + -2.3 784,469 + -1.3 784,484 + -2.1 784,501 + -0.0 784,501 + -0.3 784,501 + +1.6 784,501 + -0.3 784,501 + -0.9 784,501 + +1.1 784,501 + +1.1 784,501 + -1.8 784,501 + +1.4 784,501 + +1.3 784,501 + -0.9 784,501 + -0.0 784,501 + -1.0 784,504 - -1.4 784,506 + -1.6 784,506 + -0.7 784,506 + -0.3 784,509 - +0.3 784,509 - +1.2 784,509 - -0.5 784,509 - -1.7 784,509 - -1.4 784,509 - +0.4 784,509 - -1.8 784,509 - +1.7 784,514 - +0.8 784,519 - +1.8 784,568 - +1.8 784,578 - +1.6 784,592 - +2.8 784,615 - +2.7 784,623 + -0.2 784,623 + +0.3 784,623 + -2.1 784,631 + +2.6 784,650 + +1.8 784,673 + -1.0 784,714 - +2.8 784,730 - +1.6 784,767 + -0.5 784,793 + +1.8 784,793 + -0.3 784,793 + +1.3 784,801 - -2.9 784,803 - -0.3 784,808 + -0.3 784,820 - -0.7 784,913 - PGA1_c07590 0.10 -1.9 784,923 - PGA1_c07590 0.11 -0.6 784,947 - PGA1_c07590 0.13 +2.6 784,947 - PGA1_c07590 0.13 -0.9 784,981 + PGA1_c07590 0.16 +0.1 784,981 + PGA1_c07590 0.16 +2.1 785,118 - PGA1_c07590 0.27 +0.0 785,160 - PGA1_c07590 0.30 +2.2 785,168 - PGA1_c07590 0.31 -1.8 785,408 - PGA1_c07590 0.51 +0.4 785,425 - PGA1_c07590 0.52 +1.6 785,432 - PGA1_c07590 0.53 +0.1 785,452 - PGA1_c07590 0.54 +2.1 785,452 - PGA1_c07590 0.54 +0.6 785,452 - PGA1_c07590 0.54 -1.9 785,488 + PGA1_c07590 0.57 +3.2 785,555 - PGA1_c07590 0.63 +1.6 785,573 + PGA1_c07590 0.64 +2.3 785,580 + PGA1_c07590 0.65 +0.7 785,626 + PGA1_c07590 0.68 -2.2 785,634 - PGA1_c07590 0.69 +1.3 785,658 + PGA1_c07590 0.71 -0.9 785,688 + PGA1_c07590 0.74 -2.3 785,706 + PGA1_c07590 0.75 -0.7 785,714 - PGA1_c07590 0.76 -1.6 785,714 - PGA1_c07590 0.76 +1.2 785,741 + PGA1_c07590 0.78 +1.1 785,757 + PGA1_c07590 0.79 -1.8 785,757 + PGA1_c07590 0.79 +2.1 785,765 - PGA1_c07590 0.80 +3.0 785,805 + PGA1_c07590 0.83 -2.0 785,805 + PGA1_c07590 0.83 +3.2 785,805 + PGA1_c07590 0.83 +0.9 785,805 + PGA1_c07590 0.83 -2.7 785,813 - PGA1_c07590 0.84 -0.3 785,813 - PGA1_c07590 0.84 +1.2 785,813 - PGA1_c07590 0.84 +1.1 785,813 - PGA1_c07590 0.84 -1.2 785,870 + PGA1_c07590 0.88 +3.1 785,911 + +0.5 786,025 + +1.3 786,025 + +1.8 786,025 + +0.3 786,038 - -1.3 786,041 + -2.2 786,049 - +0.7 786,051 + +1.4 786,051 + +0.6 786,059 - -1.6 786,061 - -0.3 786,078 - +0.3 786,189 + PGA1_c07600 0.25 -0.4 786,194 + PGA1_c07600 0.27 +0.7 786,197 - PGA1_c07600 0.27 +0.1 786,202 - PGA1_c07600 0.28 -1.5 786,202 - PGA1_c07600 0.28 -0.3 786,202 - PGA1_c07600 0.28 +3.3 786,231 + PGA1_c07600 0.35 +0.7 786,231 + PGA1_c07600 0.35 -1.2 786,235 + PGA1_c07600 0.36 +0.3 786,241 + PGA1_c07600 0.37 -1.3 786,262 + PGA1_c07600 0.41 -2.4 786,270 - PGA1_c07600 0.43 +0.3 786,270 - PGA1_c07600 0.43 -0.9 786,319 + PGA1_c07600 0.54 -2.4 786,324 + PGA1_c07600 0.55 +2.2 786,324 + PGA1_c07600 0.55 +0.4 786,324 + PGA1_c07600 0.55 -0.5 786,327 - PGA1_c07600 0.56 +3.1 786,327 - PGA1_c07600 0.56 +1.6 786,331 + PGA1_c07600 0.57 -0.3 786,332 - PGA1_c07600 0.57 -0.3 786,339 - PGA1_c07600 0.58 -0.0 786,339 - PGA1_c07600 0.58 -1.5 786,359 + PGA1_c07600 0.63 +1.5 786,379 + PGA1_c07600 0.67 -1.7 786,393 - PGA1_c07600 0.70 +0.8 786,434 + PGA1_c07600 0.79 -1.5 786,442 + PGA1_c07600 0.81 +2.2 786,442 + PGA1_c07600 0.81 +1.5 786,442 + PGA1_c07600 0.81 +1.6 786,442 - PGA1_c07600 0.81 -1.0 786,442 - PGA1_c07600 0.81 -0.9 786,450 - PGA1_c07600 0.83 +1.6 786,450 - PGA1_c07600 0.83 +0.1 786,515 + -0.7 786,527 - +0.4 786,576 + -1.3 786,576 + -1.2 786,576 + +0.7 786,576 + +1.6 786,576 + +1.1 786,576 + +1.5 786,576 + +0.8 786,576 + +0.6 786,576 + -0.0 786,576 + +1.8 786,576 + +2.3 786,576 + +0.8 786,576 + -0.9 786,584 - -1.7 786,584 - +0.7 786,584 - +1.9 786,584 - -0.9 786,586 + -1.3 786,586 + +0.3 786,586 + +1.8 786,594 - -0.7 786,594 - -1.2 786,648 - +0.6 786,665 - +0.1 786,677 + -1.5 786,679 - +1.0 786,679 - -0.0 786,679 - -0.0 786,704 - -0.9 786,739 - -0.5 786,741 + +2.3 786,773 + -0.3 786,781 - +0.7 786,806 + PGA1_c07610 0.12 -0.7 786,809 - PGA1_c07610 0.12 +0.7
Or see this region's nucleotide sequence